Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g39340 | OGI:10063920 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:20993816-20995009 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGGTGTTCCGCGGGCACGACCTCCGGCGAGGTCTAGAGCAAGCCATGCGCAGCCGCCTCCTCGCCGACGCGACGCCGGCAGGAGGCTCGGCCGTGCCCATCCACTGGTCCAGACACCTCTACAACGTGGCGAACTTCACTATCGGCACGCCGCCGCAGCCCGCGTCGGCGATCATCGACGTCGCCGGTGAGCTCGTCTGGACGCAGTGCTCGCGGTGCAGCCGCTGCTTCAAGCAGGACCTGCCCCTGTTCATCCCGAACGCGTCGTCCACCTTCCGGCCGGAGCCGTGCGGCACCGACGCCTGCAAGTCCACCCCGACGAGCAACTGCTCCGGCGACGTGTGCACCTACGAGAGCACCACAAACATCAGGTTGGATCGGCACACCACCTTGGGCATCGTCGGCACCGAAACGTTCGCCATCGGGACGGCCACGGCGAGCCTCGCCTTCGGGTGCGTCGTGGCGAGCGACATCGACACCATGGACGGGACTTCGGGTTTCATCGGGCTAGGGAGGACGCCACGGTCGCTCGTCGCGCAGATGAAGCTCACCAAGTTCTCGTACTGCCTCTCGCCACGCGGCACCGGGAAGAGCAGCCGGCTGTTCCTCGGCTCCTCCGCCAAACTGGCCGGCGGCGAGAGCACCTCGACGGCGCCGTTCATCAAGACCTCGCCCGACGATGACAGCCACCACTACTACCTGCTCAGCCTGGACGCCATTAGAGCCGGCAACACGACGATCGCCACGGCTCAGAGCGGCGGCATCCTCGTGATGCACACCGTCTCGCCGTTCAGCCTCCTGGTCGACAGCGCGTACAGGGCCTTCAAGAAGGCGGTGACGGAGGCCGTCGGCGGCGCGGCCGCGCCGCCGATGGCGACGCCGCCGCAGCCGTTCGACCTCTGCTTCAAGAAGGCGGCGGGGTTCAGCCGCGCCACCGCCCCGGACCTGGTGTTCACGTTCCAGGGCGGCGGCGCCGCGTTGACGGTGCCGCCGGCGAAGTACCTGATCGACGTCGGCGAGGAGAAGGACACGGCGTGTGCGGCGATCCTGAGCATGGCGCGGCTGAACAGGACGGGGTTGGAGGGGGTGAGCGTCCTGGGAAGCTTGCAGCAGGAGAACGTCCACTTCCTCTACGATCTCAAGAAGGAGACGCTCTCCTTCGAACCTGCGGATTGCAGCTCACTCCCCTGA
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| CDS seq | ATGGCGGTGTTCCGCGGGCACGACCTCCGGCGAGGTCTAGAGCAAGCCATGCGCAGCCGCCTCCTCGCCGACGCGACGCCGGCAGGAGGCTCGGCCGTGCCCATCCACTGGTCCAGACACCTCTACAACGTGGCGAACTTCACTATCGGCACGCCGCCGCAGCCCGCGTCGGCGATCATCGACGTCGCCGGTGAGCTCGTCTGGACGCAGTGCTCGCGGTGCAGCCGCTGCTTCAAGCAGGACCTGCCCCTGTTCATCCCGAACGCGTCGTCCACCTTCCGGCCGGAGCCGTGCGGCACCGACGCCTGCAAGTCCACCCCGACGAGCAACTGCTCCGGCGACGTGTGCACCTACGAGAGCACCACAAACATCAGGTTGGATCGGCACACCACCTTGGGCATCGTCGGCACCGAAACGTTCGCCATCGGGACGGCCACGGCGAGCCTCGCCTTCGGGTGCGTCGTGGCGAGCGACATCGACACCATGGACGGGACTTCGGGTTTCATCGGGCTAGGGAGGACGCCACGGTCGCTCGTCGCGCAGATGAAGCTCACCAAGTTCTCGTACTGCCTCTCGCCACGCGGCACCGGGAAGAGCAGCCGGCTGTTCCTCGGCTCCTCCGCCAAACTGGCCGGCGGCGAGAGCACCTCGACGGCGCCGTTCATCAAGACCTCGCCCGACGATGACAGCCACCACTACTACCTGCTCAGCCTGGACGCCATTAGAGCCGGCAACACGACGATCGCCACGGCTCAGAGCGGCGGCATCCTCGTGATGCACACCGTCTCGCCGTTCAGCCTCCTGGTCGACAGCGCGTACAGGGCCTTCAAGAAGGCGGTGACGGAGGCCGTCGGCGGCGCGGCCGCGCCGCCGATGGCGACGCCGCCGCAGCCGTTCGACCTCTGCTTCAAGAAGGCGGCGGGGTTCAGCCGCGCCACCGCCCCGGACCTGGTGTTCACGTTCCAGGGCGGCGGCGCCGCGTTGACGGTGCCGCCGGCGAAGTACCTGATCGACGTCGGCGAGGAGAAGGACACGGCGTGTGCGGCGATCCTGAGCATGGCGCGGCTGAACAGGACGGGGTTGGAGGGGGTGAGCGTCCTGGGAAGCTTGCAGCAGGAGAACGTCCACTTCCTCTACGATCTCAAGAAGGAGACGCTCTCCTTCGAACCTGCGGATTGCAGCTCACTCCCCTGA
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| Protein seq | MAVFRGHDLRRGLEQAMRSRLLADATPAGGSAVPIHWSRHLYNVANFTIGTPPQPASAIIDVAGELVWTQCSRCSRCFKQDLPLFIPNASSTFRPEPCGTDACKSTPTSNCSGDVCTYESTTNIRLDRHTTLGIVGTETFAIGTATASLAFGCVVASDIDTMDGTSGFIGLGRTPRSLVAQMKLTKFSYCLSPRGTGKSSRLFLGSSAKLAGGESTSTAPFIKTSPDDDSHHYYLLSLDAIRAGNTTIATAQSGGILVMHTVSPFSLLVDSAYRAFKKAVTEAVGGAAAPPMATPPQPFDLCFKKAAGFSRATAPDLVFTFQGGGAALTVPPAKYLIDVGEEKDTACAAILSMARLNRTGLEGVSVLGSLQQENVHFLYDLKKETLSFEPADCSSLP |
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| Function | Aspartic proteinase nepenthesin-1 [UniProtKB/Swiss-Prot:Q766C3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g39340 | LOC_Os10g39340.1 | Chr10 | 20993816 | 20995009 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGGTGTTCCGCGGGCACGACCTCCGGCGAGGTCTAGAGCAAGCCATGCGCAGCCGCCTCCTCGCCGACGCGACGCCGGCAGGAGGCTCGGCCGTGCCCATCCACTGGTCCAGACACCTCTACAACGTGGCGAACTTCACTATCGGCACGCCGCCGCAGCCCGCGTCGGCGATCATCGACGTCGCCGGTGAGCTCGTCTGGACGCAGTGCTCGCGGTGCAGCCGCTGCTTCAAGCAGGACCTGCCCCTGTTCATCCCGAACGCGTCGTCCACCTTCCGGCCGGAGCCGTGCGGCACCGACGCCTGCAAGTCCACCCCGACGAGCAACTGCTCCGGCGACGTGTGCACCTACGAGAGCACCACAAACATCAGGTTGGATCGGCACACCACCTTGGGCATCGTCGGCACCGAAACGTTCGCCATCGGGACGGCCACGGCGAGCCTCGCCTTCGGGTGCGTCGTGGCGAGCGACATCGACACCATGGACGGGACTTCGGGTTTCATCGGGCTAGGGAGGACGCCACGGTCGCTCGTCGCGCAGATGAAGCTCACCAAGTTCTCGTACTGCCTCTCGCCACGCGGCACCGGGAAGAGCAGCCGGCTGTTCCTCGGCTCCTCCGCCAAACTGGCCGGCGGCGAGAGCACCTCGACGGCGCCGTTCATCAAGACCTCGCCCGACGATGACAGCCACCACTACTACCTGCTCAGCCTGGACGCCATTAGAGCCGGCAACACGACGATCGCCACGGCTCAGAGCGGCGGCATCCTCGTGATGCACACCGTCTCGCCGTTCAGCCTCCTGGTCGACAGCGCGTACAGGGCCTTCAAGAAGGCGGTGACGGAGGCCGTCGGCGGCGCGGCCGCGCCGCCGATGGCGACGCCGCCGCAGCCGTTCGACCTCTGCTTCAAGAAGGCGGCGGGGTTCAGCCGCGCCACCGCCCCGGACCTGGTGTTCACGTTCCAGGGCGGCGGCGCCGCGTTGACGGTGCCGCCGGCGAAGTACCTGATCGACGTCGGCGAGGAGAAGGACACGGCGTGTGCGGCGATCCTGAGCATGGCGCGGCTGAACAGGACGGGGTTGGAGGGGGTGAGCGTCCTGGGAAGCTTGCAGCAGGAGAACGTCCACTTCCTCTACGATCTCAAGAAGGAGACGCTCTCCTTCGAACCTGCGGATTGCAGCTCACTCCCCTGA
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| Protein seq | MAVFRGHDLRRGLEQAMRSRLLADATPAGGSAVPIHWSRHLYNVANFTIGTPPQPASAIIDVAGELVWTQCSRCSRCFKQDLPLFIPNASSTFRPEPCGTDACKSTPTSNCSGDVCTYESTTNIRLDRHTTLGIVGTETFAIGTATASLAFGCVVASDIDTMDGTSGFIGLGRTPRSLVAQMKLTKFSYCLSPRGTGKSSRLFLGSSAKLAGGESTSTAPFIKTSPDDDSHHYYLLSLDAIRAGNTTIATAQSGGILVMHTVSPFSLLVDSAYRAFKKAVTEAVGGAAAPPMATPPQPFDLCFKKAAGFSRATAPDLVFTFQGGGAALTVPPAKYLIDVGEEKDTACAAILSMARLNRTGLEGVSVLGSLQQENVHFLYDLKKETLSFEPADCSSLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0538200 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g39320 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0538200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0018460 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018850 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0018240 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0018520 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0345800 | SBH | 0.0348425 | 0.5113305 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0018400 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0370600 | SBH | 0.0479165 | 2.066965 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0018170 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0018050 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018640 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0018200 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018720 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G018460 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018510 | RBH | 0.0 | 3.164784 | 0.0 |
