Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0538200 | OGI:10063920 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:20971240-20972640 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACAATCAAGCATCAATTCCTCATTAGCATCGCTGGTTGATACTAAACTAACAGTAGCCATAATCATGGGAAGGCCAGTGGCAACGCTGCTGGTGCTGTGCTTCATCTCTGTCACGGCGCGCGCCGCCGCGTTCCGCGTGCACGGCCGCCTCCTCGCCGACGCCGCGACGGAGGGAGGCGCCGTCGTGCCCATCCACTGGACCCAGGCAATGAACTACGTCGCGAACTTCACCATCGGCACGCCGCCGCAGCCGGCGTCGGCGGTCATCGACCTCGCCGGGGAGCTCGTCTGGACGCAGTGCAAGCAGTGCAGCCGCTGCTTCGAGCAGGACACGCCCCTGTTCGACCCGACCGCGTCGAACACCTACCGGGCGGAGCCGTGCGGCACCCCGCTCTGCGAGTCCATCCCGAGCGACAGCCGCAACTGCTCCGGCAACGTGTGCGCGTACCAGGCGTCCACCAATGCCGGGGACACCGGCGGCAAGGTCGGCACCGACACCTTCGCCGTCGGGACGGCCAAGGCGAGCCTCGCGTTCGGGTGCGTCGTGGCGAGCGACATCGACACCATGGGCGGGCCTTCCGGGATCGTCGGGCTAGGGAGGACGCCGTGGTCGCTCGTCACCCAGACGGGCGTCGCCGCGTTCTCCTACTGCCTGGCGCCGCACGACGCCGGGAGGAACAGCGCGCTGTTCCTCGGCTCCTCCGCGAAGCTCGCCGGCGGCGGCAAGGCCGCCTCGACGCCGTTCGTCAACATCTCCGGCAACGGCAATGACCTGAGCAACTACTACAAGGTCCAACTCGAAGGGCTGAAAGCCGGCGACGCGATGATCCCGCTGCCGCCGAGCGGCAGCACCGTCCTGCTCGACACCTTCTCGCCGATCAGCTTCCTCGTCGACGGCGCCTACCAGGCCGTCAAGAAGGCGGTGACGGCCGCCGTCGGCGCACCGCCGATGGCGACGCCGGTGGAGCCGTTCGACCTCTGCTTCCCGAAATCGGGGGCGAGCGGCGCGGCGCCGGACCTCGTGTTCACGTTCCGGGGCGGCGCCGCCATGACGGTGCCGGCGACGAACTACCTGCTCGACTACAAGAACGGCACGGTGTGCCTCGCCATGCTGAGCTCGGCGCGGCTGAACTCGACGACGGAGCTGAGCTTGCTGGGAAGCTTGCAGCAGGAGAACATCCATTTCCTCTTCGACCTCGACAAGGAGACGCTCTCCTTCGAGCCTGCAGACTGCACTAAACTCTCCTAGCTAATCAATGGCTGCTGTGCTGCTACTTAATTACTTTCAGGAAGCAGGAGAGTGCAGGCTATATGTATGTGTACTTCTGAATAACGCAGCCATATATGCGGCATGAGCTGCACGCTGCTCATGTTGGTGAAAATAATACCCCCATTCTTATT
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| CDS seq | ATGGGAAGGCCAGTGGCAACGCTGCTGGTGCTGTGCTTCATCTCTGTCACGGCGCGCGCCGCCGCGTTCCGCGTGCACGGCCGCCTCCTCGCCGACGCCGCGACGGAGGGAGGCGCCGTCGTGCCCATCCACTGGACCCAGGCAATGAACTACGTCGCGAACTTCACCATCGGCACGCCGCCGCAGCCGGCGTCGGCGGTCATCGACCTCGCCGGGGAGCTCGTCTGGACGCAGTGCAAGCAGTGCAGCCGCTGCTTCGAGCAGGACACGCCCCTGTTCGACCCGACCGCGTCGAACACCTACCGGGCGGAGCCGTGCGGCACCCCGCTCTGCGAGTCCATCCCGAGCGACAGCCGCAACTGCTCCGGCAACGTGTGCGCGTACCAGGCGTCCACCAATGCCGGGGACACCGGCGGCAAGGTCGGCACCGACACCTTCGCCGTCGGGACGGCCAAGGCGAGCCTCGCGTTCGGGTGCGTCGTGGCGAGCGACATCGACACCATGGGCGGGCCTTCCGGGATCGTCGGGCTAGGGAGGACGCCGTGGTCGCTCGTCACCCAGACGGGCGTCGCCGCGTTCTCCTACTGCCTGGCGCCGCACGACGCCGGGAGGAACAGCGCGCTGTTCCTCGGCTCCTCCGCGAAGCTCGCCGGCGGCGGCAAGGCCGCCTCGACGCCGTTCGTCAACATCTCCGGCAACGGCAATGACCTGAGCAACTACTACAAGGTCCAACTCGAAGGGCTGAAAGCCGGCGACGCGATGATCCCGCTGCCGCCGAGCGGCAGCACCGTCCTGCTCGACACCTTCTCGCCGATCAGCTTCCTCGTCGACGGCGCCTACCAGGCCGTCAAGAAGGCGGTGACGGCCGCCGTCGGCGCACCGCCGATGGCGACGCCGGTGGAGCCGTTCGACCTCTGCTTCCCGAAATCGGGGGCGAGCGGCGCGGCGCCGGACCTCGTGTTCACGTTCCGGGGCGGCGCCGCCATGACGGTGCCGGCGACGAACTACCTGCTCGACTACAAGAACGGCACGGTGTGCCTCGCCATGCTGAGCTCGGCGCGGCTGAACTCGACGACGGAGCTGAGCTTGCTGGGAAGCTTGCAGCAGGAGAACATCCATTTCCTCTTCGACCTCGACAAGGAGACGCTCTCCTTCGAGCCTGCAGACTGCACTAAACTCTCCTAG
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| Protein seq | MGRPVATLLVLCFISVTARAAAFRVHGRLLADAATEGGAVVPIHWTQAMNYVANFTIGTPPQPASAVIDLAGELVWTQCKQCSRCFEQDTPLFDPTASNTYRAEPCGTPLCESIPSDSRNCSGNVCAYQASTNAGDTGGKVGTDTFAVGTAKASLAFGCVVASDIDTMGGPSGIVGLGRTPWSLVTQTGVAAFSYCLAPHDAGRNSALFLGSSAKLAGGGKAASTPFVNISGNGNDLSNYYKVQLEGLKAGDAMIPLPPSGSTVLLDTFSPISFLVDGAYQAVKKAVTAAVGAPPMATPVEPFDLCFPKSGASGAAPDLVFTFRGGAAMTVPATNYLLDYKNGTVCLAMLSSARLNSTTELSLLGSLQQENIHFLFDLDKETLSFEPADCTKLS |
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| Function | Aspartic proteinase nepenthesin-1 [UniProtKB/Swiss-Prot:Q766C3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0538200 | Os10t0538200-01 | Chr10 | 20971240 | 20972640 | + | irgsp1_rep | ||
| CDS seq | ATGGGAAGGCCAGTGGCAACGCTGCTGGTGCTGTGCTTCATCTCTGTCACGGCGCGCGCCGCCGCGTTCCGCGTGCACGGCCGCCTCCTCGCCGACGCCGCGACGGAGGGAGGCGCCGTCGTGCCCATCCACTGGACCCAGGCAATGAACTACGTCGCGAACTTCACCATCGGCACGCCGCCGCAGCCGGCGTCGGCGGTCATCGACCTCGCCGGGGAGCTCGTCTGGACGCAGTGCAAGCAGTGCAGCCGCTGCTTCGAGCAGGACACGCCCCTGTTCGACCCGACCGCGTCGAACACCTACCGGGCGGAGCCGTGCGGCACCCCGCTCTGCGAGTCCATCCCGAGCGACAGCCGCAACTGCTCCGGCAACGTGTGCGCGTACCAGGCGTCCACCAATGCCGGGGACACCGGCGGCAAGGTCGGCACCGACACCTTCGCCGTCGGGACGGCCAAGGCGAGCCTCGCGTTCGGGTGCGTCGTGGCGAGCGACATCGACACCATGGGCGGGCCTTCCGGGATCGTCGGGCTAGGGAGGACGCCGTGGTCGCTCGTCACCCAGACGGGCGTCGCCGCGTTCTCCTACTGCCTGGCGCCGCACGACGCCGGGAGGAACAGCGCGCTGTTCCTCGGCTCCTCCGCGAAGCTCGCCGGCGGCGGCAAGGCCGCCTCGACGCCGTTCGTCAACATCTCCGGCAACGGCAATGACCTGAGCAACTACTACAAGGTCCAACTCGAAGGGCTGAAAGCCGGCGACGCGATGATCCCGCTGCCGCCGAGCGGCAGCACCGTCCTGCTCGACACCTTCTCGCCGATCAGCTTCCTCGTCGACGGCGCCTACCAGGCCGTCAAGAAGGCGGTGACGGCCGCCGTCGGCGCACCGCCGATGGCGACGCCGGTGGAGCCGTTCGACCTCTGCTTCCCGAAATCGGGGGCGAGCGGCGCGGCGCCGGACCTCGTGTTCACGTTCCGGGGCGGCGCCGCCATGACGGTGCCGGCGACGAACTACCTGCTCGACTACAAGAACGGCACGGTGTGCCTCGCCATGCTGAGCTCGGCGCGGCTGAACTCGACGACGGAGCTGAGCTTGCTGGGAAGCTTGCAGCAGGAGAACATCCATTTCCTCTTCGACCTCGACAAGGAGACGCTCTCCTTCGAGCCTGCAGACTGCACTAAACTCTCCTAG
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| Protein seq | MGRPVATLLVLCFISVTARAAAFRVHGRLLADAATEGGAVVPIHWTQAMNYVANFTIGTPPQPASAVIDLAGELVWTQCKQCSRCFEQDTPLFDPTASNTYRAEPCGTPLCESIPSDSRNCSGNVCAYQASTNAGDTGGKVGTDTFAVGTAKASLAFGCVVASDIDTMGGPSGIVGLGRTPWSLVTQTGVAAFSYCLAPHDAGRNSALFLGSSAKLAGGGKAASTPFVNISGNGNDLSNYYKVQLEGLKAGDAMIPLPPSGSTVLLDTFSPISFLVDGAYQAVKKAVTAAVGAPPMATPVEPFDLCFPKSGASGAAPDLVFTFRGGAAMTVPATNYLLDYKNGTVCLAMLSSARLNSTTELSLLGSLQQENIHFLFDLDKETLSFEPADCTKLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0538200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g39300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0537800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0018430 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018840 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0018210 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018760 | RBH | 0.0 | 0.044137 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0018490 | RBH | 0.0 | 5.884624 | 3.067868 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0346300 | SBH | 0 | 0.1752735 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0018380 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0370800 | RBH | 0.4132875 | 62.9046805 | 0.0287445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0018140 | RBH | 0.0 | 0.086792 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0018030 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018610 | RBH | 0.0 | 13.380600 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0018180 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018700 | RBH | 0.0 | 0.982757 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G018430 | RBH | 0.0 | 0.454718 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018490 | RBH | 0.0 | 5.647221 | 0.0 |
