Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g22290 | OGI:10039240 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:11525808-11528024 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGACGGCCATCGTGAGCGCCGTGCTGAGCTCGCTGGCGCCGACGCTCTACGCGCTCGCGCGCGACAGGTACAGCCTTGAGGAGAACGTCCGGCGAGACGTCCAGTCCGTGAAGGCCGAGCTTGACATGATGCTCGCCGCCATCCAAGTCCACGCCGCCAGCCACGGATCCGGACCCGTCGTTCAGGCGGTGTGGGTCGACAAGGCGCGCCGCCTGGCTCACCAGATGGAGGACTGCGTCGACCGCTTCGTCTACGACCAGCTCACCGCCGCCCACGGCTCCTCGCGGCACGCAGCACCGCTCGGCTCGCGTCCGACGTCAGGGGCTGTTAGGATACACGTAGGCTACGATAGCATAAAACAAAATTTTCTATCGCGTAAACCAGGAACTATGCAAGTATTAGATCATAGATCGTTACCACTCGACGCGCTGCGCTGCGGAAGAAAACGCTGAGAAGTCGAAGGAACTCTCGTGAAGTAGCGCGCGTTGATGTAGAGGAAGTAGTCGATCGCACCGGCTCGACCTTCTCCTCCTCGTGCGTTCTCCTCGCCATACTCTCCCACGCCGATCAGCACCGCAAACCAGCGACGCCTCTACCGGTATCCACACGTACAGGGACAGAACGCCACGCGCAGATGTGCTAGCACCCGCGCGCGGCTAGGGTTTTGCTCGGAGAAGGAAGTGACGGCTAGGGTTTCTCACGTGATGCAATACCTCCGCCGGTCACACCCCTCACGAATATATAGGATCCATCACTCGGGCCTCCAAGGCCCGTAGGACTCCTATTCGGATCCCTATCCGAATTAAGCTCATATTGGATCTCCATCCAATCCCCTTATTCCGACCCATTAAGCGTGCGACCCTGTAGGTTCATATATACTCGGTTGTAACCCGAAAACTCCTTTCCGGTCCACGCGTCAACAGCGGCCCCTAGCAGAACGTATTGACCCACCGGGCATACATAAAGATCATATTGGCTGAATCTCTAGTGTATACTTGTATGAACCCCTTTGCCTCACGATATCGATTAAACTCAAGGCTAGATATGTGCCATCCTCTAATAGCTCAATCATTCACTCGAACTTGTTGATAGATTATATAACTTGTGATTGACCCCTCAATCACCTTTGGCATGGCCATGCACTTCCATAATCTATAACATCGAGGGGCCCAGAGATATCTCTCCATAGGAGGGGCAAATCCCATCTTGATTATTCATATCCCACTACATGTTTCATAGCATACCTGAAAACTACTTTTATAACTACCCAATTACGAAGTAGCGTTTAGCAGTCCCTAAGTAAGCTACTACACATGTTGGGAACCATAATAATCTCATGTCTAAGGATTCAACACCAACACTAAATGAGATCACTGATGACACAACACATATGGCTCTTACAGTGTCTCATGTTGGGTCTATTCAACAACATGTTTACTAACATATGTCCATATTATTAATTTGGTATCTCTATACCATGATCCATGAGACATAATTATTAATTAATACATGTGCAGATCATCTAAACATATTTGTTCCACATATGATATTTGATCAGGGATCCTTTAGAAATAGCAACACATAACATAAAGAGTCTCATGAAAGAATCACATATTCATTAACCAATAATGAGTTTATCTATTTCAAGGAATAAAGTCGAATAAATATGTAAAAATAGTGTGTGATACAATCATCTCTATGATTGCCTCTAGGACATATCACTAACAAGGGCGCTCAGGGAGGAGTCGGCCCGGCTGTATGAGCTCAAGACCAAGTACGCCGGCCCCATGGCCGCCACCGGACCACCGTCAGCGGCGAAGAAGTCTTCTGCTATGTCCGAGCCGGTGCCAGCTCTCCGACGTAACCTCGTCGGCATGGAGGCTCCCCGGAGGGAGCTGCTGGAGCTGGTGGAGGAGGAGGAGGAGGAGGAGGAAGCCGAGGGCGGCAAGAAGCGGCGGCAGAAGGTGATCTCCATCGTCGGGTTCGGTGGCCTAGGGAAGACCGCGCTCGCCAAGCAAGTGTACGACGACGTCGGCGGCGGGCAGTTCAGCCCGATGGTTTGGGTTAGCGCGGCGGAGAAGACCGCCGAGGAGGTTCTCGAGGAGATACTGATTAAGAAGTTTGGGTCGCAGGTTAGGGATGACGACGACGACATGGCCGACGTTGAGCATCTAAGCTTGCGTCTCAGAACACACTTGCGTAACAAGAGGTGA
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| CDS seq | ATGGAGACGGCCATCGTGAGCGCCGTGCTGAGCTCGCTGGCGCCGACGCTCTACGCGCTCGCGCGCGACAGGTACAGCCTTGAGGAGAACGTCCGGCGAGACGTCCAGTCCGTGAAGGCCGAGCTTGACATGATGCTCGCCGCCATCCAAGTCCACGCCGCCAGCCACGGATCCGGACCCGTCGTTCAGGCGGTGTGGGTCGACAAGGCGCGCCGCCTGGCTCACCAGATGGAGGACTGCGTCGACCGCTTCGTCTACGACCAGCTCACCGCCGCCCACGGCTCCTCGCGGCACGCAGCACCGCTCGGCTCGCGTCCGACGTCAGGGGCTGTTAGGATACACGACATATCACTAACAAGGGCGCTCAGGGAGGAGTCGGCCCGGCTGTATGAGCTCAAGACCAAGTACGCCGGCCCCATGGCCGCCACCGGACCACCGTCAGCGGCGAAGAAGTCTTCTGCTATGTCCGAGCCGGTGCCAGCTCTCCGACGTAACCTCGTCGGCATGGAGGCTCCCCGGAGGGAGCTGCTGGAGCTGGTGGAGGAGGAGGAGGAGGAGGAGGAAGCCGAGGGCGGCAAGAAGCGGCGGCAGAAGGTGATCTCCATCGTCGGGTTCGGTGGCCTAGGGAAGACCGCGCTCGCCAAGCAAGTGTACGACGACGTCGGCGGCGGGCAGTTCAGCCCGATGGTTTGGGTTAGCGCGGCGGAGAAGACCGCCGAGGAGGTTCTCGAGGAGATACTGATTAAGAAGTTTGGGTCGCAGGTTAGGGATGACGACGACGACATGGCCGACGTTGAGCATCTAAGCTTGCGTCTCAGAACACACTTGCGTAACAAGAGGTGA
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| Protein seq | METAIVSAVLSSLAPTLYALARDRYSLEENVRRDVQSVKAELDMMLAAIQVHAASHGSGPVVQAVWVDKARRLAHQMEDCVDRFVYDQLTAAHGSSRHAAPLGSRPTSGAVRIHDISLTRALREESARLYELKTKYAGPMAATGPPSAAKKSSAMSEPVPALRRNLVGMEAPRRELLELVEEEEEEEEAEGGKKRRQKVISIVGFGGLGKTALAKQVYDDVGGGQFSPMVWVSAAEKTAEEVLEEILIKKFGSQVRDDDDDMADVEHLSLRLRTHLRNKR |
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| Function | Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g22290 | LOC_Os10g22290.1 | Chr10 | 11525808 | 11528024 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGACGGCCATCGTGAGCGCCGTGCTGAGCTCGCTGGCGCCGACGCTCTACGCGCTCGCGCGCGACAGGTACAGCCTTGAGGAGAACGTCCGGCGAGACGTCCAGTCCGTGAAGGCCGAGCTTGACATGATGCTCGCCGCCATCCAAGTCCACGCCGCCAGCCACGGATCCGGACCCGTCGTTCAGGCGGTGTGGGTCGACAAGGCGCGCCGCCTGGCTCACCAGATGGAGGACTGCGTCGACCGCTTCGTCTACGACCAGCTCACCGCCGCCCACGGCTCCTCGCGGCACGCAGCACCGCTCGGCTCGCGTCCGACGTCAGGGGCTGTTAGGATACACGACATATCACTAACAAGGGCGCTCAGGGAGGAGTCGGCCCGGCTGTATGAGCTCAAGACCAAGTACGCCGGCCCCATGGCCGCCACCGGACCACCGTCAGCGGCGAAGAAGTCTTCTGCTATGTCCGAGCCGGTGCCAGCTCTCCGACGTAACCTCGTCGGCATGGAGGCTCCCCGGAGGGAGCTGCTGGAGCTGGTGGAGGAGGAGGAGGAGGAGGAGGAAGCCGAGGGCGGCAAGAAGCGGCGGCAGAAGGTGATCTCCATCGTCGGGTTCGGTGGCCTAGGGAAGACCGCGCTCGCCAAGCAAGTGTACGACGACGTCGGCGGCGGGCAGTTCAGCCCGATGGTTTGGGTTAGCGCGGCGGAGAAGACCGCCGAGGAGGTTCTCGAGGAGATACTGATTAAGAAGTTTGGGTCGCAGGTTAGGGATGACGACGACGACATGGCCGACGTTGAGCATCTAAGCTTGCGTCTCAGAACACACTTGCGTAACAAGAGGTGA
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| Protein seq | METAIVSAVLSSLAPTLYALARDRYSLEENVRRDVQSVKAELDMMLAAIQVHAASHGSGPVVQAVWVDKARRLAHQMEDCVDRFVYDQLTAAHGSSRHAAPLGSRPTSGAVRIHDISLTRALREESARLYELKTKYAGPMAATGPPSAAKKSSAMSEPVPALRRNLVGMEAPRRELLELVEEEEEEEEAEGGKKRRQKVISIVGFGGLGKTALAKQVYDDVGGGQFSPMVWVSAAEKTAEEVLEEILIKKFGSQVRDDDDDMADVEHLSLRLRTHLRNKR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0370400 | RBH | 0.428178 | 0.266286 | 0.911771 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0370400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0008120 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0008170 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0008060 | SBH | 0.0 | 0.783914 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0008220 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0197500 | SBH | 0.0190255 | 0.6133505 | 0.0209335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0211000 | SBH | 0.016858 | 0.1456135 | 0.0834205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0007910 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0007990 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0008390 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0007870 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0008470 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
