Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_10g0008470 OGI:10038340 | 16/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr10:13087605-13093072
Gene Symbol -
DNA seq

tcatggcgccacaaggaccagctgcggactgcaacatcagatcagaacactatgataagaacaaactaaaccttaaagtgcaccttaagtcctaacaacttaacatgctataatttatgtttaattaaaataaataaataaataaatactttgttagcttatggaatatatttgtgaggttgcacttcgttaccagctcatctccagcgagtttatcccagtgttgatgagacaatagcatagaaacagctgcaattccctcaattcccgcatgtttatcctagtgttgatgagacgagtgcttcttaaattacaagaatagtcggaaaatagaatacaatatcataagagttttctgcgagttggaataaaagaccattatgttcaccaaaatactactacctctatttttaaatgcatggagttgaattttgaactaacaaaaagaaacgagtagtagatagaacatcgaaaagcgagtcatccgacaataatgtgacttcaatattacaagcagcaatcaacatattatgaaatcgtaaacgaagatcttaaagcataactgtcagatggcaggaaccaaaatgaagcctcaatcttcacaatccttgctagttgctgtgctgaatagtactttgtttgaagccaccccccccccaaacaaaaaaaaaagaaaatcttggaagctgtctaatttttcattttccatttcttcacgcatggcagagatcttggaaatctcgaaacctgttaatttcttacaaatagattccgtatgccattttgtagccaattccgatgaagtgtagaaggtttctctgcctgtgcaacataatgttctgatctagcccttctcgtcctttcgatgaacaaaattctgggtctatttgcatgcttcttcgctacgtcttcccagtttttccgtgatcttccatttaccgcagaatcaagcaccacttccctaagacgcttgatgcccccaatgttgattaaaggaaggtttgccaaattttcatacatcagctggagagacacaagctgtggcagagctccatcctggatttcaaggaatgatggattctgaaccaccatgcatagtcgttgcaggctttggaatgccccaacttttatgacaaaaccctcgagattttgcgcgacaagtttgagataaactagacatctcaattcagtcaagctagttaagagttcctgccgaagagtagtcgatgtcagagatagctctgtgagagctaccaatgagggaacaaatggaggtatttggtgcaggtcaccttggagcttcagcgtggaaatattgcaggctccttgcagggaaaaattcatgatgtcttcagagcattcgttgaaatggacagacagagaacgggcatcgttcaagtcatcgccgtcttcaatgtagttttgaatggcatttgaaatcaaatgaaagttgtttccatctggtatagaccggcaccatatcttaattttttttcaggttcttcatatgaccaattagttgcagaaaaccttggttactgtctgtgacaaatccggctaaagtttgtagtttactttttcccgcatcaaaaaacttaagtattttatctgataccttaccgaaaagtttaaacttcccaaagaggtgaattaatttgggaagcactattgcttcgactgggaacaccatcacatcaaccttggctctcctaacatcaagtgtctccaagaaacttagtgtttcaatcttcttggggagcatggtaacttctcccccgaggctaagatacttgagcaacaacaaattggatacgccttcgagatgttgatccgtcaatccgtcacattgttccagatccaagactttgagcagtctgtacctgctgaaatccagaacacattgggatgctatgccggagaccatgagagaccggacaagagagagatcacttcttggtcctagcctgtccttcacagcagcagtgctaagttggacagcgaggcaacgaggggcatacctgggcatcacattctcatcagaaaccagtgtgatgaaaccctccgatatggacctgtgcaagatgaactcgagcatcatcccgggcagctggcatgtcttcacctcgtcgttggtgctcacaccgacaggatgaacgatgttccggtccatgaacgtcctgaagttgttgaccgccgcgtcgccaagccgagggtgaggctgttttctgacaagcccttcagccagccatcgcatcaacaatcttctcctccgaatcgggtagttgctgggaaacatgcctaggtacaacaagcaggccttggcatcatggcatggcaggcaggcatagctcctggcaagcaacccttgcattcttgctaatgcattgttgtccttgttctccagatagtaacctagtttgctgcagatgtcactgcatgtctgccctgttagagctccttctgtgcgcaagaactggcctacgcagatcagagccagtgggaggccatcacatttcttccgaagtgattctgaacctctctccatgtcaggtgagcattcctcgatagaggcacttctgaagaacaggtttttggagcattcagcatctagtttttccattttgtagatgtagccttttgggatgctgcatgcattagcaattgactgaatacttgtggtcaccactattctgctgctgataccatgatcggctgggaaagcaggctccatattacaccactgttctaccctcatatcatcaattacgatgagatacctgcgagaataattcccaatcatagagggggaaaaattgatctatgagtttagctttagcactaacaacaacttctgaatttaggtaacattcaaatacaaaaagattagctagaactgattagtttgtatcacattcttttctgattaaatataaacctggaacttaacttgggaattttagaataagattctgacaaactgagctaaccccatccctaaacccacctgttggctcttgcattgaacatctcacaatatgatgcactaaaaatggcaaatgaaagacatcgatagtttcaagttcaatccaaacttgttttaactagtctaggttgtgaaagggcatatagcctagtggttgcagtgacctgagtagcaccacaaggtcctgagttcaaatctccataggagcgaatttcatattgggttatttgagggctaagttccctgtttgataggctaagttcctaatttaaaaaagtcctgagttcaaatcttcataggagcgaatttcagattggatgggttatttgaggtctaagttccctatttgataggctaagttcccaattttaaaaagactacatatatccaaccaatcttcataggagcgaatttcagattggatgggttatttgaggtctaagttccctatttgataggctaagttcccaattttaaaaagactacatatatccaaccaatcttcataggagcgaatttcagattggatgggttatttgaggtctaagttccctatttgataggctaagttcccaattttaaaaagactacatatatccggttggatatagatgccaggtaaaaaaaaaacccttcttAaaaaaaactagtctatagattaacaggttagagcccctttgaatcggaaaaacacagaggattgcaaaacacaggaatgtctgtttgattggaccacagaaaaaaacgcatgaatcagataagagagatagaatcagaggaaatgttccaagaggtagataagagagatagaatcagaggaaatgttccaagaggttagacctcttgctaactttccttcAaaatgtgcataggattactcattccataggaattttaaaggatcggatatgattcaatcctttgtttggatttttttttccataggattgaaatcctccaaaattcctacatttttcctacaaatcaaagaggccttaaacttcattcctagaaaaaaaaattgtgtgcacattcatacagagcatatgcctaatgtaaataaagtgcccgagcactatttgttctagaagcagtatataataattgggactgtttatttgtgaagtgactgatttatttttttccttgtctaccgacagctcttttttctttaacaccaaatcaatatgcaataactcatgcataTttttttgtcgctattgtgaaaaaaatgttctaaactaaactgtgaagagaatacactttgttgtttatcctcactatataagcataaaaccttttctcctgttggtgtctattagtttgtgtttgcttagctttgtttctactatcgtgaactttttgtgtgagttctgtaataattggctgtagctctttgagtaacagctgggatgtttcattccattatgtAaaaaaatatataagcataaaactattctagattagtctagaaaaataaaaaaatatctgcagtttttatatatcatacaccttataaaaaggtttagtctacactctattcaagttttaggtgaatgacgaaacgaccaacaaaattgcaaaaccgattaattagccttaccttttgttgcgaaggtgttccctgagacgcttgctgagttggtcgacatcagacacgtcccttactcgcacctcaaatctctgcaatatctccatgagaacctccccagctgtcttctctgccgcgctaacccatgcccgaggactgaaattcagctcgtcagtgtcgcaatacacttgattggcaaggacagtcttccctagcccaccgaagccgacgatggagatcaccttgcgctgctgctccggctgcccctcgccgtttaccagctccaggagctccctccggcgagcctccatgccaacgagctcatctgaaaaagtcgacaacggtgcggcagaggatagagtactaccaccaccactgtcaccgatggtgatgtactctcggctgagaacagctgctccgtactgctggttcagctgggacagttcagctgatctgctcctgagctccctaacctcggatgcaagccgagcagggccttgcctccgggagccatgaggagccatctgatcgtagatgtagctgtcgatgcagtcctccatctgatgagccagggtgcgcactttctcgatccatgtcgcctgcacagctcctgctcccagctgatgatgatgacggccatctccgcttcgcgttgtcatcagcaagctgctgtaatcttggatggcgctcaacatcatgtccagctcgttcttgatggatcggatgtcttgccggatggtctcctccagattgtactgcccactgatgaacgtgtagagcttagggatgatcgtggtcagtcgactgatcacgatgggtgttggatccatcacgcacttgcactgcacctccaagaggcaaagagcccgattgatgggagttgatttggggatt

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CDS seq

atggatccaacacccatcgtgatcagtcgactgaccacgatcatccctaagctctacacgttcatcagtgggcagtacaatctggaggagaccatccggcaagacatccgatccatcaagaacgagctggacatgatgttgagcgccatccaagattacagcagcttgctgatgacaacgcgaagcggagatggccgtcatcatcatcagctgggagcaggagctgtgcaggcgacatggatcgagaaagtgcgcaccctggctcatcagatggaggactgcatcgacagctacatctacgatcagatggctcctcatggctcccggaggcaaggccctgctcggcttgcatccgaggttagggagctcaggagcagatcagctgaactgtcccagctgaaccagcagtacggagcagctgttctcagccgagagtacatcaccatcggtgacagtggtggtggtagtactctatcctctgccgcaccgttgtcgactttttcagatgagctcgttggcatggaggctcgccggagggagctcctggagctggtaaacggcgaggggcagccggagcagcagcgcaaggtgatctccatcgtcggcttcggtgggctagggaagactgtccttgccaatcaagtgtattgcgacactgacgagctgaatttcagtcctcgggcatgggttagcgcggcagagaagacagctggggaggttctcatggagatattgcagagatttgaggtgcgagtaagggacgtgtctgatgtcgaccaactcagcaagcgtctcagggaacaccttcgcaacaaaaggtatctcatcgtaattgatgatatgagggtagaacagtggtgtaatatggagcctgctttcccagccgatcatggtatcagcagcagaatagtggtgaccacaagtattcagtcaattgctaatgcatgcagcatcccaaaaggctacatctacaaaatggaaaaactagatgctgaatgctccaaaaacctgttcttcagaagtgcctctatcgaggaatgctcacctgacatggagagaggttcagaatcacttcggaagaaatgtgatggcctcccactggctctgatctgcgtaggccagttcttgcgcacagaaggagctctaacagggcagacatgcagtgacatctgcagcaaactaggttactatctggagaacaaggacaacaatgcattagcaagaatgcaagggttgcttgccaggagctatgcctgcctgccatgccatgatgccaaggcctgcttgttgtacctaggcatgtttcccagcaactacccgattcggaggagaagattgttgatgcgatggctggctgaagggcttgtcagaaaacagcctcaccctcggcttggcgacgcggcggtcaacaacttcaggacgttcatggaccggaacatcgttcatcctgtcggtgtgagcaccaacgacgaggtgaagacatgccagctgcccgggatgatgctcgagttcatcttgcacaggtccatatcggagggtttcatcacactggtttctgatgagaatgtgatgcccaggtatgcccctcgttgcctcgctgtccaacttagcactgctgctgtgaaggacaggctaggaccaagaagtgatctctctcttgtccggtctctcatggtctccggcatagcatcccaatgtgttctggatttcagcaggtacagactgctcaaagtcttggatctggaacaatgtgacggattgacggatcaacatctcgaaggcgtatccaatttgttgttgctcaagtatcttagcctcgggggagaagttaccatgctccccaagaagattgaaacactaagtttcttggagacacttgatgttaggagagccaaggttgatgtgatggtgttcccagtcgaagcaatagtgcttcccaaattaattcacctctttgggaagtttaaacttttcggtaagatatggtgccggtctataccagatggaaacaactttcatttgatttcaaatgccattcaaaactacattgaagacggcgatgacttgaacgatgcccgttctctgtctgtccatttcaacgaatgctctgaagacatcatgaatttttccctgcaaggagcctgcaatatttccacgctgaagctccaaggtgacctgcaccaaatacctccatttgttccctcattggtagctctcacagagctatctctgacatcgactactcttcggcaggaactcttaactagcttgactgaattgagatgtctagtttatctcaaacttgtcgcgcaaaatctcgagggttttgtcataaaagttggggcattccaaagcctgcaacgactatgcatggtggttcagaatccatcattccttgaaatccaggatggagctctgccacagcttgtgtctctccagctgatgtatgaaaatttggcaaaccttcctttaatcaacattgggggcatcaagcgtcttagggaagtggtgcttgattctgcggtaaatggaagatcacggaaaaactgggaagacgtagcgaagaagcatgcaaatagacccagaattttgttcatcgaaaggacgagaagggctagatcagaacattatgttgcacaggcagagaaaccttctacacttcatcggaattggctacaaaatggcatacggaatctatttgacttaagtccgcagctggtccttgtggcgccatga

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Protein seq

MDPTPIVISRLTTIIPKLYTFISGQYNLEETIRQDIRSIKNELDMMLSAIQDYSSLLMTTRSGDGRHHHQLGAGAVQATWIEKVRTLAHQMEDCIDSYIYDQMAPHGSRRQGPARLASEVRELRSRSAELSQLNQQYGAAVLSREYITIGDSGGGSTLSSAAPLSTFSDELVGMEARRRELLELVNGEGQPEQQRKVISIVGFGGLGKTVLANQVYCDTDELNFSPRAWVSAAEKTAGEVLMEILQRFEVRVRDVSDVDQLSKRLREHLRNKRYLIVIDDMRVEQWCNMEPAFPADHGISSRIVVTTSIQSIANACSIPKGYIYKMEKLDAECSKNLFFRSASIEECSPDMERGSESLRKKCDGLPLALICVGQFLRTEGALTGQTCSDICSKLGYYLENKDNNALARMQGLLARSYACLPCHDAKACLLYLGMFPSNYPIRRRRLLMRWLAEGLVRKQPHPRLGDAAVNNFRTFMDRNIVHPVGVSTNDEVKTCQLPGMMLEFILHRSISEGFITLVSDENVMPRYAPRCLAVQLSTAAVKDRLGPRSDLSLVRSLMVSGIASQCVLDFSRYRLLKVLDLEQCDGLTDQHLEGVSNLLLLKYLSLGGEVTMLPKKIETLSFLETLDVRRAKVDVMVFPVEAIVLPKLIHLFGKFKLFGKIWCRSIPDGNNFHLISNAIQNYIEDGDDLNDARSLSVHFNECSEDIMNFSLQGACNISTLKLQGDLHQIPPFVPSLVALTELSLTSTTLRQELLTSLTELRCLVYLKLVAQNLEGFVIKVGAFQSLQRLCMVVQNPSFLEIQDGALPQLVSLQLMYENLANLPLINIGGIKRLREVVLDSAVNGRSRKNWEDVAKKHANRPRILFIERTRRARSEHYVAQAEKPSTLHRNWLQNGIRNLFDLSPQLVLVAP

Function Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M6]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_10g0008470 OsLaMu_10g0008470.01 Chr10 13087605 13093072 - NAM
CDS seq

atggatccaacacccatcgtgatcagtcgactgaccacgatcatccctaagctctacacgttcatcagtgggcagtacaatctggaggagaccatccggcaagacatccgatccatcaagaacgagctggacatgatgttgagcgccatccaagattacagcagcttgctgatgacaacgcgaagcggagatggccgtcatcatcatcagctgggagcaggagctgtgcaggcgacatggatcgagaaagtgcgcaccctggctcatcagatggaggactgcatcgacagctacatctacgatcagatggctcctcatggctcccggaggcaaggccctgctcggcttgcatccgaggttagggagctcaggagcagatcagctgaactgtcccagctgaaccagcagtacggagcagctgttctcagccgagagtacatcaccatcggtgacagtggtggtggtagtactctatcctctgccgcaccgttgtcgactttttcagatgagctcgttggcatggaggctcgccggagggagctcctggagctggtaaacggcgaggggcagccggagcagcagcgcaaggtgatctccatcgtcggcttcggtgggctagggaagactgtccttgccaatcaagtgtattgcgacactgacgagctgaatttcagtcctcgggcatgggttagcgcggcagagaagacagctggggaggttctcatggagatattgcagagatttgaggtgcgagtaagggacgtgtctgatgtcgaccaactcagcaagcgtctcagggaacaccttcgcaacaaaaggtatctcatcgtaattgatgatatgagggtagaacagtggtgtaatatggagcctgctttcccagccgatcatggtatcagcagcagaatagtggtgaccacaagtattcagtcaattgctaatgcatgcagcatcccaaaaggctacatctacaaaatggaaaaactagatgctgaatgctccaaaaacctgttcttcagaagtgcctctatcgaggaatgctcacctgacatggagagaggttcagaatcacttcggaagaaatgtgatggcctcccactggctctgatctgcgtaggccagttcttgcgcacagaaggagctctaacagggcagacatgcagtgacatctgcagcaaactaggttactatctggagaacaaggacaacaatgcattagcaagaatgcaagggttgcttgccaggagctatgcctgcctgccatgccatgatgccaaggcctgcttgttgtacctaggcatgtttcccagcaactacccgattcggaggagaagattgttgatgcgatggctggctgaagggcttgtcagaaaacagcctcaccctcggcttggcgacgcggcggtcaacaacttcaggacgttcatggaccggaacatcgttcatcctgtcggtgtgagcaccaacgacgaggtgaagacatgccagctgcccgggatgatgctcgagttcatcttgcacaggtccatatcggagggtttcatcacactggtttctgatgagaatgtgatgcccaggtatgcccctcgttgcctcgctgtccaacttagcactgctgctgtgaaggacaggctaggaccaagaagtgatctctctcttgtccggtctctcatggtctccggcatagcatcccaatgtgttctggatttcagcaggtacagactgctcaaagtcttggatctggaacaatgtgacggattgacggatcaacatctcgaaggcgtatccaatttgttgttgctcaagtatcttagcctcgggggagaagttaccatgctccccaagaagattgaaacactaagtttcttggagacacttgatgttaggagagccaaggttgatgtgatggtgttcccagtcgaagcaatagtgcttcccaaattaattcacctctttgggaagtttaaacttttcggtaagatatggtgccggtctataccagatggaaacaactttcatttgatttcaaatgccattcaaaactacattgaagacggcgatgacttgaacgatgcccgttctctgtctgtccatttcaacgaatgctctgaagacatcatgaatttttccctgcaaggagcctgcaatatttccacgctgaagctccaaggtgacctgcaccaaatacctccatttgttccctcattggtagctctcacagagctatctctgacatcgactactcttcggcaggaactcttaactagcttgactgaattgagatgtctagtttatctcaaacttgtcgcgcaaaatctcgagggttttgtcataaaagttggggcattccaaagcctgcaacgactatgcatggtggttcagaatccatcattccttgaaatccaggatggagctctgccacagcttgtgtctctccagctgatgtatgaaaatttggcaaaccttcctttaatcaacattgggggcatcaagcgtcttagggaagtggtgcttgattctgcggtaaatggaagatcacggaaaaactgggaagacgtagcgaagaagcatgcaaatagacccagaattttgttcatcgaaaggacgagaagggctagatcagaacattatgttgcacaggcagagaaaccttctacacttcatcggaattggctacaaaatggcatacggaatctatttgacttaagtccgcagctggtccttgtggcgccatga

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Protein seq

MDPTPIVISRLTTIIPKLYTFISGQYNLEETIRQDIRSIKNELDMMLSAIQDYSSLLMTTRSGDGRHHHQLGAGAVQATWIEKVRTLAHQMEDCIDSYIYDQMAPHGSRRQGPARLASEVRELRSRSAELSQLNQQYGAAVLSREYITIGDSGGGSTLSSAAPLSTFSDELVGMEARRRELLELVNGEGQPEQQRKVISIVGFGGLGKTVLANQVYCDTDELNFSPRAWVSAAEKTAGEVLMEILQRFEVRVRDVSDVDQLSKRLREHLRNKRYLIVIDDMRVEQWCNMEPAFPADHGISSRIVVTTSIQSIANACSIPKGYIYKMEKLDAECSKNLFFRSASIEECSPDMERGSESLRKKCDGLPLALICVGQFLRTEGALTGQTCSDICSKLGYYLENKDNNALARMQGLLARSYACLPCHDAKACLLYLGMFPSNYPIRRRRLLMRWLAEGLVRKQPHPRLGDAAVNNFRTFMDRNIVHPVGVSTNDEVKTCQLPGMMLEFILHRSISEGFITLVSDENVMPRYAPRCLAVQLSTAAVKDRLGPRSDLSLVRSLMVSGIASQCVLDFSRYRLLKVLDLEQCDGLTDQHLEGVSNLLLLKYLSLGGEVTMLPKKIETLSFLETLDVRRAKVDVMVFPVEAIVLPKLIHLFGKFKLFGKIWCRSIPDGNNFHLISNAIQNYIEDGDDLNDARSLSVHFNECSEDIMNFSLQGACNISTLKLQGDLHQIPPFVPSLVALTELSLTSTTLRQELLTSLTELRCLVYLKLVAQNLEGFVIKVGAFQSLQRLCMVVQNPSFLEIQDGALPQLVSLQLMYENLANLPLINIGGIKRLREVVLDSAVNGRSRKNWEDVAKKHANRPRILFIERTRRARSEHYVAQAEKPSTLHRNWLQNGIRNLFDLSPQLVLVAP

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_10g0370400 SBH 0.428178 0.266286 0.911771
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g21950 RBH 0.000000 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os10g0370400 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_10g0008120 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0008170 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_10g0008060 RBH 0.0 0.783914 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_10g0008340 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_10g0008220 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_10G0197500 RBH 0.0190255 0.6133505 0.0209335
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_10g0008170 RBH 0.0 0.056398 0.043192
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0211000 RBH 0.016858 0.1456135 0.0834205
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_10g0007910 RBH 0.0 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_10g0007990 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0008390 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_10g0007870 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G008180 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_10g0008200 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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