Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g21800 | OGI:10038110 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:11186975-11188483 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCACGTCAACACCTTTCTATTTCCCCTCTCCTCCTCTCCCTTCTCTGCTTCTCTTTCTCTGTGCAGGCAAGCCGACCGGAGGGGAGGAGGTCGGTGGGGCGCGCCCGCCGCACGCTCCACGAGGTGGGCCGCGGCGGCGGCGTCGTCGTCGCCGGCCGCGCCGTCTCCGCCCAGTTCGCCACCGCTGGCGCAGACCTGTCCTCTGGCGCCGCGGCGGCGGCGTCGGCGGCGGGGAGGCGGTGTACGTCACCAACGTCGCACCGGGCGCGAGCGCGGAGCGGCTGCGCGCCTTCTTCGCCGGGTTCGGGGAGCTCGAGGGCGGCCGTTCAGCTTCGACGCGTCTCCCGCGGGTGCGCGCTCTTTGTGTACCGCGCGGCGGAGGGCGCCAGCTCGACGCCGACTCCGCCGGAAGAGCAAACCACGCGCGCGGCCGCCGCTGCCGTGGCGTCACCGCTGCCGGCGCTAAACCTCACAAATAGAGGATTAATTGGGCAGATGTCTCCTCTTGGAAACCTAACATTCCTCAAATTTCTCTTTGTACCTGCAAATTCATTCACCGGAGAGATCCCTCAATCCTTTGGTAATATGCATCACCTGCAAATCATATACTTGAGCAATAACACATTGCAAAGAAGGATGCCTAATCTTGCAAACTGTTCCAACCTCAAGGTGCTATGGCTGAATGGAAACAATCTGGTAGGACAAATCCCTGCAGATTTGCCTCAACGCTTTCAAAGCTTGCAACTTTCAGTTAACAGTCTTACTGGACCCATCCCTGTTTCTGTTGCCAAAATTACAACGCTGAAAAGGTTTAGTTGTCTGTATAATAACATCGATGGCAGCATACCAAATGATTTTGCAAAGTTGCCTGGTTTAGTATACTTGCATCTGGGTGCAAAAATAATTGGCAGGTCAGTTTCCACAAGCTATCCTGAATCTTTCTACTCTTGTTTAACTTACCCTTGCTTCCAATCATCTAAGCGGAGAGCTACCATCCAATATCGGTAACTCTCTACCAGATCTCCAAAAGTTCCAATTGGGCGGCAACTTCTTTTATGGGCATATCCCAAATTCATTGACAAATGCTTCCAAGTTAAACCTGATCGATATAGTATCAATCAATAGTTTCACTGGGGTTGTGCCTAGATCCATTGGCAAACTTACCAAACTGTCTTGGTTAAATCTTGAGCTGAATAAATTCCATGCACATAGCCAGAAAGATCTGGAGTTTATGAACAGCTTAGCCAACTGCACTGAGCTACAAATGTCCTCCATATATGGTAATCGCTTTGAAGGCAATGTGCCAAATTCTTTTGGAAACCATTCCACTCAACGGCAGTACATACACTGATACACATGGGATTAAATCAGTTCTTAGGATCAATTCCTTCTGGTATAGCAAACATTCCCAACTTGATTGCTTTAGAATTGGGTGGTAATCTGTTTACAAATGTGATTCCACGCAGCGGCGGCGGCATGCGTGGTTTGCTCTTCCAGGCGGGGTAG
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| CDS seq | ATGCCACGTCAACACCTTTCTATTTCCCCTCTCCTCCTCTCCCTTCTCTGCTTCTCTTTCTCTGTGCAGGCAAGCCGACCGGAGGGGAGGAGGTCGGTGGGGCGCGCCCGCCGCACGCTCCACGAGGTGGGCCGCGGCGGCGGCGTCGTCGTCGCCGGCCGCGCCGTCTCCGCCCAGTTCGCCACCGCTGGCGCAGACCTGTCCTCTGGCGCCGCGGCGGCGGCGTCGGCGGCGGGGAGGCGGTGTACGTCACCAACGTCGCACCGGGCGCGAGCGCGGAGCGGCTGCGCGCCTTCTTCGCCGGGTTCGGGGAGCTCGAGGGCGGCCGTTCAGCTTCGACGCGTCTCCCGCGGGTGCGCGCTCTTTGTGTACCGCGCGGCGGAGGGCGCCAGCTCGACGCCGACTCCGCCGGAAGAGCAAACCACGCGCGCGGCCGCCGCTGCCGTGGCGTCACCGCTGCCGGCGCTAAACCTCACAAATAGAGGATTAATTGGGCAGATGTCTCCTCTTGGAAACCTAACATTCCTCAAATTTCTCTTTGTACCTGCAAATTCATTCACCGGAGAGATCCCTCAATCCTTTGGTAATATGCATCACCTGCAAATCATATACTTGAGCAATAACACATTGCAAAGAAGGATGCCTAATCTTGCAAACTGTTCCAACCTCAAGGTGCTATGGCTGAATGGAAACAATCTGGTAGGACAAATCCCTGCAGATTTGCCTCAACGCTTTCAAAGCTTGCAACTTTCAGTTAACAGTCTTACTGGACCCATCCCTGTTTCTGTTGCCAAAATTACAACGCTGAAAAGGTTTAGTTGTCTGTATAATAACATCGATGGCAGCATACCAAATGATTTTGCAAAGTTGCCTGGTTTAGTATACTTGCATCTGGGTGCAAAAATAATTGGCAGGCAATGTGCCAAATTCTTTTGGAAACCATTCCACTCAACGGCAGTACATACACTGATACACATGGGATTAAATCAGTTCTTAGGATCAATTCCTTCTGGTATAGCAAACATTCCCAACTTGATTGCTTTAGAATTGGGTGGTAATCTGTTTACAAATGTGATTCCACGCAGCGGCGGCGGCATGCGTGGTTTGCTCTTCCAGGCGGGGTAG
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| Protein seq | MPRQHLSISPLLLSLLCFSFSVQASRPEGRRSVGRARRTLHEVGRGGGVVVAGRAVSAQFATAGADLSSGAAAAASAAGRRCTSPTSHRARARSGCAPSSPGSGSSRAAVQLRRVSRGCALFVYRAAEGASSTPTPPEEQTTRAAAAAVASPLPALNLTNRGLIGQMSPLGNLTFLKFLFVPANSFTGEIPQSFGNMHHLQIIYLSNNTLQRRMPNLANCSNLKVLWLNGNNLVGQIPADLPQRFQSLQLSVNSLTGPIPVSVAKITTLKRFSCLYNNIDGSIPNDFAKLPGLVYLHLGAKIIGRQCAKFFWKPFHSTAVHTLIHMGLNQFLGSIPSGIANIPNLIALELGGNLFTNVIPRSGGGMRGLLFQAG |
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| Function | LRR receptor-like serine/threonine-protein kinase EFR [UniProtKB/Swiss-Prot:C0LGT6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g21800 | LOC_Os10g21800.1 | Chr10 | 11186975 | 11188483 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCACGTCAACACCTTTCTATTTCCCCTCTCCTCCTCTCCCTTCTCTGCTTCTCTTTCTCTGTGCAGGCAAGCCGACCGGAGGGGAGGAGGTCGGTGGGGCGCGCCCGCCGCACGCTCCACGAGGTGGGCCGCGGCGGCGGCGTCGTCGTCGCCGGCCGCGCCGTCTCCGCCCAGTTCGCCACCGCTGGCGCAGACCTGTCCTCTGGCGCCGCGGCGGCGGCGTCGGCGGCGGGGAGGCGGTGTACGTCACCAACGTCGCACCGGGCGCGAGCGCGGAGCGGCTGCGCGCCTTCTTCGCCGGGTTCGGGGAGCTCGAGGGCGGCCGTTCAGCTTCGACGCGTCTCCCGCGGGTGCGCGCTCTTTGTGTACCGCGCGGCGGAGGGCGCCAGCTCGACGCCGACTCCGCCGGAAGAGCAAACCACGCGCGCGGCCGCCGCTGCCGTGGCGTCACCGCTGCCGGCGCTAAACCTCACAAATAGAGGATTAATTGGGCAGATGTCTCCTCTTGGAAACCTAACATTCCTCAAATTTCTCTTTGTACCTGCAAATTCATTCACCGGAGAGATCCCTCAATCCTTTGGTAATATGCATCACCTGCAAATCATATACTTGAGCAATAACACATTGCAAAGAAGGATGCCTAATCTTGCAAACTGTTCCAACCTCAAGGTGCTATGGCTGAATGGAAACAATCTGGTAGGACAAATCCCTGCAGATTTGCCTCAACGCTTTCAAAGCTTGCAACTTTCAGTTAACAGTCTTACTGGACCCATCCCTGTTTCTGTTGCCAAAATTACAACGCTGAAAAGGTTTAGTTGTCTGTATAATAACATCGATGGCAGCATACCAAATGATTTTGCAAAGTTGCCTGGTTTAGTATACTTGCATCTGGGTGCAAAAATAATTGGCAGGCAATGTGCCAAATTCTTTTGGAAACCATTCCACTCAACGGCAGTACATACACTGATACACATGGGATTAAATCAGTTCTTAGGATCAATTCCTTCTGGTATAGCAAACATTCCCAACTTGATTGCTTTAGAATTGGGTGGTAATCTGTTTACAAATGTGATTCCACGCAGCGGCGGCGGCATGCGTGGTTTGCTCTTCCAGGCGGGGTAG
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| Protein seq | MPRQHLSISPLLLSLLCFSFSVQASRPEGRRSVGRARRTLHEVGRGGGVVVAGRAVSAQFATAGADLSSGAAAAASAAGRRCTSPTSHRARARSGCAPSSPGSGSSRAAVQLRRVSRGCALFVYRAAEGASSTPTPPEEQTTRAAAAAVASPLPALNLTNRGLIGQMSPLGNLTFLKFLFVPANSFTGEIPQSFGNMHHLQIIYLSNNTLQRRMPNLANCSNLKVLWLNGNNLVGQIPADLPQRFQSLQLSVNSLTGPIPVSVAKITTLKRFSCLYNNIDGSIPNDFAKLPGLVYLHLGAKIIGRQCAKFFWKPFHSTAVHTLIHMGLNQFLGSIPSGIANIPNLIALELGGNLFTNVIPRSGGGMRGLLFQAG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0375400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0375400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0008030 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0008070 | RBH | 0.0 | 1.468869 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0006700 | SBH | 0.0 | 0.0 | 0.205119 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0008230 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0008130 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0195800 | RBH | 0.185708 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0008080 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0209300 | RBH | 0.231596 | 4.896305 | 2.5115385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0007820 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0007900 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0008290 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0007770 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004850 | SBH | 0.056974 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G008070 | RBH | 0.0 | 1.078299 | 1.162360 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0008110 | RBH | 0.0 | 0.000000 | 0.0 |
