Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g21398 | OGI:08061490 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:10911669-10912282 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTTCCCTATGGTAACTGGGTTCATGAGTTATGGTCAACAAACAATACGCGCAGCAAGGTACATTGGTCAAAGTTTCATAATTACCTTATCCCACACAAATCGTTTACCTATAACGATTCACTACCCCTATGAAAAATCAATTACATCGGAGCGTTTCCGGGGGCGAATCCACTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTTGCGTATGCCCTATAGATCTACCTCTTGTGGATTGGAGATTTGAAAAGGATATTAAAAGGAAACAATTGCTTAATTATAGTATTGATTTCGGAGTTTGTATATTTTGTGGTAATTGTGTTGAGTACTGTCCGACAAACTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGATCGTCATGAATTGAATTACAATCAAATTGCTTTGAGTCGGTTACCAATCTCCATAATGGGAGATTACACAATTCAAACAATTAGGAATTCAACTCAAAGTAAAATAGACGAAGAAAAATCTTGGAATTCAAGAACGATTACTGATTACTAGAATTTTTTTGTTAGAATCCAAAAGTTCTTTACTAACTAGAAAGAAAAACGAATACCTACTGCTTATTGCAA
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| CDS seq | ATGTTCCCTATGGTAACTGGGTTCATGAGTTATGGTCAACAAACAATACGCGCAGCAAGGTACATTGGTCAAAGTTTCATAATTACCTTATCCCACACAAATCGTTTACCTATAACGATTCACTACCCCTATGAAAAATCAATTACATCGGAGCGTTTCCGGGGGCGAATCCACTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTTGCGTATGCCCTATAGATCTACCTCTTGTGGATTGGAGATTTGAAAAGGATATTAAAAGGAAACAATTGCTTAATTATAGTATTGATTTCGGAGTTTGTATATTTTGTGGTAATTGTGTTGAGTACTGTCCGACAAACTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGATCGTCATGAATTGAATTACAATCAAATTGCTTTGAGTCGGTTACCAATCTCCATAATGGGAGATTACACAATTCAAACAATTAGGAATTCAACTCAAAGTAAAATAGACGAAGAAAAATCTTGGAATTCAAGAACGATTACTGATTACTAG
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| Protein seq | MFPMVTGFMSYGQQTIRAARYIGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFDKCIACEVCVCVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYNQIALSRLPISIMGDYTIQTIRNSTQSKIDEEKSWNSRTITDY |
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| Function | NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [UniProtKB/Swiss-Prot:P0C386] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g21398 | LOC_Os10g21398.1 | Chr10 | 10911669 | 10912282 | + | MSU_osa1r7 | ||
| CDS seq | ATGTTCCCTATGGTAACTGGGTTCATGAGTTATGGTCAACAAACAATACGCGCAGCAAGGTACATTGGTCAAAGTTTCATAATTACCTTATCCCACACAAATCGTTTACCTATAACGATTCACTACCCCTATGAAAAATCAATTACATCGGAGCGTTTCCGGGGGCGAATCCACTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTTGCGTATGCCCTATAGATCTACCTCTTGTGGATTGGAGATTTGAAAAGGATATTAAAAGGAAACAATTGCTTAATTATAGTATTGATTTCGGAGTTTGTATATTTTGTGGTAATTGTGTTGAGTACTGTCCGACAAACTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGATCGTCATGAATTGAATTACAATCAAATTGCTTTGAGTCGGTTACCAATCTCCATAATGGGAGATTACACAATTCAAACAATTAGGAATTCAACTCAAAGTAAAATAGACGAAGAAAAATCTTGGAATTCAAGAACGATTACTGATTACTAG
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| Protein seq | MFPMVTGFMSYGQQTIRAARYIGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFDKCIACEVCVCVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYNQIALSRLPISIMGDYTIQTIRNSTQSKIDEEKSWNSRTITDY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 43.116673 | 36.987282 | 7.396338 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006710 | RBH | 39.312271 | 11.566991 | 69.041618 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006790 | RBH | 11.777254 | 1.219464 | 10.348128 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0007720 | RBH | 148.116699 | 10.236263 | 124.920898 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0015341 | RBH | 1.758622 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0017040 | RBH | 402.579254 | 29.601931 | 401.698120 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0333300 | RBH | 655.6232605 | 105.065735 | 163.877121 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009970 | RBH | 10.908875 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0354200 | RBH | 141.8894195 | 11.7406895 | 23.5893395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0010080 | RBH | 38.506786 | 0.513389 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005620 | RBH | 43.970116 | 25.336077 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0009620 | RBH | 405.344574 | 41.709888 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019960 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009980 | RBH | 16.722368 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006550 | RBH | 9.211183 | 0.000000 | 9.065042 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004710 | RBH | 106.379898 | 52.818497 | 150.241302 |
