Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g05240 | OGI:10009500 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:2587274-2588758 | ||||||||
| Gene Symbol | OsFbox533, Os_F0350 | ||||||||||
| DNA seq | ACAGATTACTTTGTTTCCGTACACTCGCCAAATCCAACGGTCAAGATTAGCCGCGCCGCCGAGATGATAAGCCACACCACGCCGCCGCCGCCGCCGCCGCCGCCGGAGACGGACGAGATGCCGCCGGAGATGGACGAGATGCCGCTGAGCGACGACGTGCTCCGCGAGATCCTCCTCCGCGTCCCGCCGCTGCCGACCCAGCTCATCCGCGCCGGCGCAGTCTGCAGGCGGTGGCGCCGCATCGCCGCCGAGCCGGGGTTCCTCCGCCGCTACCGCGCCCACCACGGCGAGCCGCCGCTGCTCGGCTTCTTCGTCAACCCGCGCGGCCGGGAGCCCCTCTTCCGCGCCACCCTCGACGCCCCCGACCGCGTCCCGCCCGAGCGCTTCTCCATCCGCCTCCACGACGACACCGAGCTCGGCGGCAACTGGTACTACCACGGCTGCCGCCATGGCCGCCTCCTCCTCCTCAACTGGAAGAGCGGCCTCGGCTGCCGCCAGATCCTCATCTGGGACCCCGTCTCCGGCGACCTCATCCACCTCTCCCCCCCGCCGCAGCTCGATGCCCTAAAGGGGGTCTTCTTCCAGGCCACGGTGATCTGCGCCGCCACCACCGCCGCCGGTGACCACGTCCACGGCGACAACTGCAAGTCCAACCCCTTCAAGGTGGTCCTCGTCGGCACCGACAGGTCCACCGCCTTCGCCTTCGTCTACTCGTCGGAGACCGGAGATTGGGGAGACCATGCTGCCGAAACCCCAGTGGGGAATTGCATCTCGCTTGGGTGCAGATGCATCCAGATTGGGGATTTCCTCTACTGGATGCTCTTCGGCTACGACAACAACATCCTCGAGTTCAATTTGGTGAACCACAGCCTCTCCGTGGTGTATGTGCCGACGCATATCCATGAAGATCATGATGGCCTCTACCCGATTACTCTCCAAGAGGGGACAGAGCTTGGGCTCATTGTCATGTCAAGATCCTGCATGCAGATATGGCAGTGGATGATCGATTTCGACGGCCTCCCCGGGTGGCTGCCGCTCGAACCGATCTACCTCGACAATCTTCTTCATCTGAGCGCGGGGGAGTGTGTCAATCCGACCAAGGTGCTGGGGTTTTCGCAGGATTACAATGAGCTGTTCGTCGCGTCGTCCACCAGGATCTTCATGGTCAATCTTGAGTCATTGCGGTTCAAGGAGCTTTGCAAAATGGACGAGTTCTTGGACTCCCCCGACTCCCGTCCTATATATGCCGTGTATCCGATCGCAAGTTTCTATGATGCAGATAGTTCATCGTCTTCTGCATAAGCCAGTGGTAGAACAATCTACTTTAGCTCATGTATTCCAGAGTGTGTAACTTATGTTGCTATGGTATCAAAGTTACGATCTTTTGAGTGAGTATTTTCTCATCCTGAGATACAAGCATTTGTAAACTACCAACCGAAACCCATAAAACAATGTAAATACTTAAAATTGATGAGTTTGGATGCC
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| CDS seq | ATGATAAGCCACACCACGCCGCCGCCGCCGCCGCCGCCGCCGGAGACGGACGAGATGCCGCCGGAGATGGACGAGATGCCGCTGAGCGACGACGTGCTCCGCGAGATCCTCCTCCGCGTCCCGCCGCTGCCGACCCAGCTCATCCGCGCCGGCGCAGTCTGCAGGCGGTGGCGCCGCATCGCCGCCGAGCCGGGGTTCCTCCGCCGCTACCGCGCCCACCACGGCGAGCCGCCGCTGCTCGGCTTCTTCGTCAACCCGCGCGGCCGGGAGCCCCTCTTCCGCGCCACCCTCGACGCCCCCGACCGCGTCCCGCCCGAGCGCTTCTCCATCCGCCTCCACGACGACACCGAGCTCGGCGGCAACTGGTACTACCACGGCTGCCGCCATGGCCGCCTCCTCCTCCTCAACTGGAAGAGCGGCCTCGGCTGCCGCCAGATCCTCATCTGGGACCCCGTCTCCGGCGACCTCATCCACCTCTCCCCCCCGCCGCAGCTCGATGCCCTAAAGGGGGTCTTCTTCCAGGCCACGGTGATCTGCGCCGCCACCACCGCCGCCGGTGACCACGTCCACGGCGACAACTGCAAGTCCAACCCCTTCAAGGTGGTCCTCGTCGGCACCGACAGGTCCACCGCCTTCGCCTTCGTCTACTCGTCGGAGACCGGAGATTGGGGAGACCATGCTGCCGAAACCCCAGTGGGGAATTGCATCTCGCTTGGGTGCAGATGCATCCAGATTGGGGATTTCCTCTACTGGATGCTCTTCGGCTACGACAACAACATCCTCGAGTTCAATTTGGTGAACCACAGCCTCTCCGTGGTGTATGTGCCGACGCATATCCATGAAGATCATGATGGCCTCTACCCGATTACTCTCCAAGAGGGGACAGAGCTTGGGCTCATTGTCATGTCAAGATCCTGCATGCAGATATGGCAGTGGATGATCGATTTCGACGGCCTCCCCGGGTGGCTGCCGCTCGAACCGATCTACCTCGACAATCTTCTTCATCTGAGCGCGGGGGAGTGTGTCAATCCGACCAAGGTGCTGGGGTTTTCGCAGGATTACAATGAGCTGTTCGTCGCGTCGTCCACCAGGATCTTCATGGTCAATCTTGAGTCATTGCGGTTCAAGGAGCTTTGCAAAATGGACGAGTTCTTGGACTCCCCCGACTCCCGTCCTATATATGCCGTGTATCCGATCGCAAGTTTCTATGATGCAGATAGTTCATCGTCTTCTGCATAA
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| Protein seq | MISHTTPPPPPPPPETDEMPPEMDEMPLSDDVLREILLRVPPLPTQLIRAGAVCRRWRRIAAEPGFLRRYRAHHGEPPLLGFFVNPRGREPLFRATLDAPDRVPPERFSIRLHDDTELGGNWYYHGCRHGRLLLLNWKSGLGCRQILIWDPVSGDLIHLSPPPQLDALKGVFFQATVICAATTAAGDHVHGDNCKSNPFKVVLVGTDRSTAFAFVYSSETGDWGDHAAETPVGNCISLGCRCIQIGDFLYWMLFGYDNNILEFNLVNHSLSVVYVPTHIHEDHDGLYPITLQEGTELGLIVMSRSCMQIWQWMIDFDGLPGWLPLEPIYLDNLLHLSAGECVNPTKVLGFSQDYNELFVASSTRIFMVNLESLRFKELCKMDEFLDSPDSRPIYAVYPIASFYDADSSSSSA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g05240 | LOC_Os10g05240.1 | Chr10 | 2587274 | 2588758 | + | MSU_osa1r7 | ||
| CDS seq | ATGATAAGCCACACCACGCCGCCGCCGCCGCCGCCGCCGCCGGAGACGGACGAGATGCCGCCGGAGATGGACGAGATGCCGCTGAGCGACGACGTGCTCCGCGAGATCCTCCTCCGCGTCCCGCCGCTGCCGACCCAGCTCATCCGCGCCGGCGCAGTCTGCAGGCGGTGGCGCCGCATCGCCGCCGAGCCGGGGTTCCTCCGCCGCTACCGCGCCCACCACGGCGAGCCGCCGCTGCTCGGCTTCTTCGTCAACCCGCGCGGCCGGGAGCCCCTCTTCCGCGCCACCCTCGACGCCCCCGACCGCGTCCCGCCCGAGCGCTTCTCCATCCGCCTCCACGACGACACCGAGCTCGGCGGCAACTGGTACTACCACGGCTGCCGCCATGGCCGCCTCCTCCTCCTCAACTGGAAGAGCGGCCTCGGCTGCCGCCAGATCCTCATCTGGGACCCCGTCTCCGGCGACCTCATCCACCTCTCCCCCCCGCCGCAGCTCGATGCCCTAAAGGGGGTCTTCTTCCAGGCCACGGTGATCTGCGCCGCCACCACCGCCGCCGGTGACCACGTCCACGGCGACAACTGCAAGTCCAACCCCTTCAAGGTGGTCCTCGTCGGCACCGACAGGTCCACCGCCTTCGCCTTCGTCTACTCGTCGGAGACCGGAGATTGGGGAGACCATGCTGCCGAAACCCCAGTGGGGAATTGCATCTCGCTTGGGTGCAGATGCATCCAGATTGGGGATTTCCTCTACTGGATGCTCTTCGGCTACGACAACAACATCCTCGAGTTCAATTTGGTGAACCACAGCCTCTCCGTGGTGTATGTGCCGACGCATATCCATGAAGATCATGATGGCCTCTACCCGATTACTCTCCAAGAGGGGACAGAGCTTGGGCTCATTGTCATGTCAAGATCCTGCATGCAGATATGGCAGTGGATGATCGATTTCGACGGCCTCCCCGGGTGGCTGCCGCTCGAACCGATCTACCTCGACAATCTTCTTCATCTGAGCGCGGGGGAGTGTGTCAATCCGACCAAGGTGCTGGGGTTTTCGCAGGATTACAATGAGCTGTTCGTCGCGTCGTCCACCAGGATCTTCATGGTCAATCTTGAGTCATTGCGGTTCAAGGAGCTTTGCAAAATGGACGAGTTCTTGGACTCCCCCGACTCCCGTCCTATATATGCCGTGTATCCGATCGCAAGTTTCTATGATGCAGATAGTTCATCGTCTTCTGCATAA
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| Protein seq | MISHTTPPPPPPPPETDEMPPEMDEMPLSDDVLREILLRVPPLPTQLIRAGAVCRRWRRIAAEPGFLRRYRAHHGEPPLLGFFVNPRGREPLFRATLDAPDRVPPERFSIRLHDDTELGGNWYYHGCRHGRLLLLNWKSGLGCRQILIWDPVSGDLIHLSPPPQLDALKGVFFQATVICAATTAAGDHVHGDNCKSNPFKVVLVGTDRSTAFAFVYSSETGDWGDHAAETPVGNCISLGCRCIQIGDFLYWMLFGYDNNILEFNLVNHSLSVVYVPTHIHEDHDGLYPITLQEGTELGLIVMSRSCMQIWQWMIDFDGLPGWLPLEPIYLDNLLHLSAGECVNPTKVLGFSQDYNELFVASSTRIFMVNLESLRFKELCKMDEFLDSPDSRPIYAVYPIASFYDADSSSSSA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.777526 | 0.226048 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0142500 | RBH | 1.320487 | 0.328930 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g05000 | SBH | 0.0 | 0.0 | 0.180713 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0142500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0002320 | RBH | 0.0 | 0.916414 | 0.481760 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0002290 | RBH | 0.0 | 0.0 | 0.369222 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0002280 | RBH | 0.0 | 0.0 | 0.668784 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0002420 | RBH | 0.047864 | 0.039722 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0002170 | RBH | 0.704940 | 0.0 | 0.955598 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0043900 | RBH | 0.7531315 | 1.754351 | 2.375781 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0002430 | RBH | 0.130311 | 0.216024 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0049900 | RBH | 0.85651 | 2.490347 | 1.3938675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0002250 | RBH | 0.055787 | 0.072071 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0002270 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0002350 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0002170 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0002360 | RBH | 0.0 | 1.936689 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G002320 | RBH | 0.0 | 0.0 | 0.434424 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0002260 | RBH | 0.320032 | 0.0 | 0.528562 |
