Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g05000 | OGI:10008670 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:2438829-2440258 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CATCATTCTAGTGCACTGGTTGGGAATTCTGTTTACTGGTTGTTCCAGGGTGATGGAATCTCCATCCTTCAGTTCGATTTCGATACGCAGGGACTAGCCCGGATCGATGTGCCACCGGATGTGCATGCCCATGTGGTTACCTACTACCAGATTCGGATCATGCCAGCAGAGGATGGTGGGCTTCTCCTCCTTGTTCTGCCAGAATTTAGCCTCAATGTGTGGAAGTATCAAGGCCAATTGTGATGGGTGTTGCTGGATGGATGCTGGAAAAAACAATTGAACTGGACAGGCTTCTTTCCGTCGAACCAGGGCGTCATGGAGCTGCACCAACTATTCTGGGCTTTGTGGAGGAACATAATGAAGTATTGCTGTGCACAGATATTGGTGCCTTCATGGTCAATCTGCACTCAATGCAATTCAAGAAGCTTTCCCAAACCATGGAACCAGGATTTTATCATCCATTCACTAGTTTTTATACTAAGGTAATACCTTGCCAACGCTTTTACGCTGGTAGTTGGTCCTTTGTGAATGGCTATTATTTGTTATGTGACAATTATTGTTCCTTTAAATGCTTGATGAACTGTCCTACATAGTATGGCATGCATTTCTGATATTAGTCTTCAATTATGCAGTTTGCATCAGGGGTATATTCATGTGTTAGCTCGTTTGGTTAATTTATTCTATGAACGTTCACCATACCATGATTACTCAGATTTACATATTACTTTGAAAATTGGCGACAAACACATGCAAAACTACCTGAACCAATTGAAATATTCTCTTGCTGACTGTTTGTGTGCATGTTTGACTAGTATGATTTAGAAGGATGGTTTCGTTTCCTGATATCATCTCTTCTAAGCGAAGTAATGTGAATAGTGAACACACGTCCTTCATTTGGCCTGACTTCGGTGTAGCATATGATTTTTTAAAAAATATTGAAGGAAAGTGCACTATCTTGGGTTAGTTGGCATGGGTTTATACCAGTGATTCATCGCTCATCTAATCTATTTTCTGTTTGCGTATTTCATTGACTAATGGGTTTTGTTTGCTTATTGACGGCAGAAAATGTTGCCCGAATGATGGATGATCTTAATAGTATTTGACCATGTTGGTTGCTGGAGAGGTATTCCTTGTGATTTTGCTGAATTTTGGATGACTGATTATCTTTGCCAGGTATTACCAAGTCAGGTATTTTATATGTCAGTCCAAGCAGCTGTTGTCTGGCCACGTGTGCCTAATATAACATGGCTCGTTAAATAGCGACAATGTAAGCATGTTCAGGTGCTGTAAGGATATCCCTTTGTCTGTAATTCTGTACGGTGACACATTGAGTCCTTTTGTGTTTGCTGTGAACCTATGACTCGATGTTCTCTATCTAGTCGACAAAACTGAAGAATCTCTTCACTTTGGTATAATATGTCATTTGTGAT
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| CDS seq | ATGGGTGTTGCTGGATGGATGCTGGAAAAAACAATTGAACTGGACAGGCTTCTTTCCGTCGAACCAGGGCGTCATGGAGCTGCACCAACTATTCTGGGCTTTGTGGAGGAACATAATGAAGTATTGCTGTGCACAGATATTGGTGCCTTCATGGTCAATCTGCACTCAATGCAATTCAAGAAGCTTTCCCAAACCATGGAACCAGGATTTTATCATCCATTCACTAGTTTTTATACTAAGAAAATGTTGCCCGAATGA |
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| Protein seq | MGVAGWMLEKTIELDRLLSVEPGRHGAAPTILGFVEEHNEVLLCTDIGAFMVNLHSMQFKKLSQTMEPGFYHPFTSFYTKKMLPE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g05000 | LOC_Os10g05000.1 | Chr10 | 2438829 | 2440258 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGTGTTGCTGGATGGATGCTGGAAAAAACAATTGAACTGGACAGGCTTCTTTCCGTCGAACCAGGGCGTCATGGAGCTGCACCAACTATTCTGGGCTTTGTGGAGGAACATAATGAAGTATTGCTGTGCACAGATATTGGTGCCTTCATGGTCAATCTGCACTCAATGCAATTCAAGAAGCTTTCCCAAACCATGGAACCAGGATTTTATCATCCATTCACTAGTTTTTATACTAAGAAAATGTTGCCCGAATGA
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| Protein seq | MGVAGWMLEKTIELDRLLSVEPGRHGAAPTILGFVEEHNEVLLCTDIGAFMVNLHSMQFKKLSQTMEPGFYHPFTSFYTKKMLPE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.180713 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0137700 | RBH | 0.0 | 0.662148 | 3.496397 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g05010 | RBH | 0.304589 | 0.313440 | 0.183243 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0137700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001990 | RBH | 0.121235 | 5.018326 | 1.844838 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0002120 | SBH | 0.0 | 0.0 | 0.407118 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0002100 | SBH | 0.000000 | 0.0 | 0.484500 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0002020 | RBH | 0.0 | 0.075037 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001820 | RBH | 0.0 | 0.0 | 4.481206 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0041200 | RBH | 0.6581995 | 0.507844 | 1.32414 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0002060 | RBH | 0.0 | 0.0 | 0.083783 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0046700 | SBH | 0.4094405 | 0.21874 | 3.8584455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001900 | RBH | 0.045903 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0002090 | SBH | 0.155632 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0002190 | SBH | 0.880973 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001980 | SBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0002170 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G002160 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0002110 | RBH | 0.000000 | 0.0 | 0.483619 |
