Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g04570 | OGI:10008110 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:2169100-2170542 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGGTGGTTGTATCGGCTATTGCAGGTGATGTTGTTAATCGATTTATATCCTTCTTGATCAAGAAGTATGAGAGCCAGGAAAATCTTGAAAGAAAGATGGAAAGGCTTCAGAATCTCTTGCTCAAAGTTCACATGATTGTCGAGGAGGCTGAGGGGCGGCACATCACTAACTCCAAGATGCTACTTCAGTTCAAGAAGATTGTAGATGCCATGTACCAAGGCTACCATGTCCTAGACATCATCAAGAATAGCATCCTTTGCAAGTCAAGACCTGAAGAGCAGGTTAGCAGTGCCAATACTATTTCAGCCCCTACATGTTATGTTAATCCTTTCCGTACTTCACAAAGCTCTACCATTAGACATGATCAGCTAAAAAGCACACTGGATAGTTTAGAAACAATTGTTTCTAGTATGACAGAGTTTGTCTATCTTCTTGGTGGATGTGAACGCATGTCTCCTAGACCCTACGACACGTATCTTTACTTTGATAACTTCATGTTTGGCCGGCAAGTGGAAAAGCAGCAAGTCATCAATATCTTACTGCAAGAGAATCTTCCACCTTTTGCTCCAACTGTTCTCCCGATCATTGGCCCTAGTAGAGTCGGTAAGAGAACTCTAGTTGCGCACGTATGCAACAATGAGATAGTTCGATCACACTTCTCGTCAATCTTGCACTTGAATGGTGAAAATATCATGAAAATGGAGTGTGAAACTTTCACTGAAAGGAGGGATTTGGTTGTGGTTGAGTTTACAGCAGATACGGATGATGACAATTGGAAGAAATTTTATGCATCGTGCACAAATATGGGCAGAGGAAGCAAGATTATAATTGTAAGTAGGATTGAGAAGATATCAAGGTTTGGAACAGTACGGCCAATTCATCTAAATAGTTTGTCACATGAGGAGTATAGTTACCTCTTCAAGGTACTCGCATTTGGAAGCACTAACCCAGAGGAGCATCCTCAATTGGTATCTATAGCAAATGAGCTAACAGTATTGCTCGGTGGCTCATTCATCACAGCAAACGTGTTCGCAGATATTTTCAGAAAGAATCAAAATGTTCACTTATGGCTCCATGTCTTAAAAAAATATAGAAATACGGTGCTGAAAAATTTCTCAGAGTTCAGTGAACACCCTAAGCTTCTTTTGGAGAAAGAACATCTTATAGATATAACCAAACTTGCATCGTCATCCTCTCCACTTCGTCTTATGCCTCCTCATTGTGAAGGCTATGGGTCGAAGAGGAGGTTAACCAAGGTGATGTTCAGTGACCTGATAGCTGACTCCATTGTTGTACCAAAGGAGGACTTTGAGTTAGTCGCATGGGAATCACGGATACCCCCTTATAGAAGGTTTGTAAACATTGTTTTGTATTGTGATGATGAGAAGAATTTTCAGCATGCGGACTCACTTCACAAGAAGCGTCAAAAAAATACATAA
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| CDS seq | ATGGAGGTGGTTGTATCGGCTATTGCAGGTGATGTTGTTAATCGATTTATATCCTTCTTGATCAAGAAGTATGAGAGCCAGGAAAATCTTGAAAGAAAGATGGAAAGGCTTCAGAATCTCTTGCTCAAAGTTCACATGATTGTCGAGGAGGCTGAGGGGCGGCACATCACTAACTCCAAGATGCTACTTCAGTTCAAGAAGATTGTAGATGCCATGTACCAAGGCTACCATGTCCTAGACATCATCAAGAATAGCATCCTTTGCAAGTCAAGACCTGAAGAGCAGGTTAGCAGTGCCAATACTATTTCAGCCCCTACATGTTATGTTAATCCTTTCCGTACTTCACAAAGCTCTACCATTAGACATGATCAGCTAAAAAGCACACTGGATAGTTTAGAAACAATTGTTTCTAGTATGACAGAGTTTGTCTATCTTCTTGGTGGATGTGAACGCATGTCTCCTAGACCCTACGACACGTATCTTTACTTTGATAACTTCATGTTTGGCCGGCAAGTGGAAAAGCAGCAAGTCATCAATATCTTACTGCAAGAGAATCTTCCACCTTTTGCTCCAACTGTTCTCCCGATCATTGGCCCTAGTAGAGTCGGTAAGAGAACTCTAGTTGCGCACGTATGCAACAATGAGATAGTTCGATCACACTTCTCGTCAATCTTGCACTTGAATGGTGAAAATATCATGAAAATGGAGTGTGAAACTTTCACTGAAAGGAGGGATTTGGTTGTGGTTGAGTTTACAGCAGATACGGATGATGACAATTGGAAGAAATTTTATGCATCGTGCACAAATATGGGCAGAGGAAGCAAGATTATAATTGTAAGTAGGATTGAGAAGATATCAAGGTTTGGAACAGTACGGCCAATTCATCTAAATAGTTTGTCACATGAGGAGTATAGTTACCTCTTCAAGGTACTCGCATTTGGAAGCACTAACCCAGAGGAGCATCCTCAATTGGTATCTATAGCAAATGAGCTAACAGTATTGCTCGGTGGCTCATTCATCACAGCAAACGTGTTCGCAGATATTTTCAGAAAGAATCAAAATGTTCACTTATGGCTCCATGTCTTAAAAAAATATAGAAATACGGTGCTGAAAAATTTCTCAGAGTTCAGTGAACACCCTAAGCTTCTTTTGGAGAAAGAACATCTTATAGATATAACCAAACTTGCATCGTCATCCTCTCCACTTCGTCTTATGCCTCCTCATTGTGAAGGCTATGGGTCGAAGAGGAGGTTAACCAAGGTGATGTTCAGTGACCTGATAGCTGACTCCATTGTTGTACCAAAGGAGGACTTTGAGTTAGTCGCATGGGAATCACGGATACCCCCTTATAGAAGGTTTGTAAACATTGTTTTGTATTGTGATGATGAGAAGAATTTTCAGCATGCGGACTCACTTCACAAGAAGCGTCAAAAAAATACATAA
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| Protein seq | MEVVVSAIAGDVVNRFISFLIKKYESQENLERKMERLQNLLLKVHMIVEEAEGRHITNSKMLLQFKKIVDAMYQGYHVLDIIKNSILCKSRPEEQVSSANTISAPTCYVNPFRTSQSSTIRHDQLKSTLDSLETIVSSMTEFVYLLGGCERMSPRPYDTYLYFDNFMFGRQVEKQQVINILLQENLPPFAPTVLPIIGPSRVGKRTLVAHVCNNEIVRSHFSSILHLNGENIMKMECETFTERRDLVVVEFTADTDDDNWKKFYASCTNMGRGSKIIIVSRIEKISRFGTVRPIHLNSLSHEEYSYLFKVLAFGSTNPEEHPQLVSIANELTVLLGGSFITANVFADIFRKNQNVHLWLHVLKKYRNTVLKNFSEFSEHPKLLLEKEHLIDITKLASSSSPLRLMPPHCEGYGSKRRLTKVMFSDLIADSIVVPKEDFELVAWESRIPPYRRFVNIVLYCDDEKNFQHADSLHKKRQKNT |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g04570 | LOC_Os10g04570.1 | Chr10 | 2169100 | 2170542 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGGTGGTTGTATCGGCTATTGCAGGTGATGTTGTTAATCGATTTATATCCTTCTTGATCAAGAAGTATGAGAGCCAGGAAAATCTTGAAAGAAAGATGGAAAGGCTTCAGAATCTCTTGCTCAAAGTTCACATGATTGTCGAGGAGGCTGAGGGGCGGCACATCACTAACTCCAAGATGCTACTTCAGTTCAAGAAGATTGTAGATGCCATGTACCAAGGCTACCATGTCCTAGACATCATCAAGAATAGCATCCTTTGCAAGTCAAGACCTGAAGAGCAGGTTAGCAGTGCCAATACTATTTCAGCCCCTACATGTTATGTTAATCCTTTCCGTACTTCACAAAGCTCTACCATTAGACATGATCAGCTAAAAAGCACACTGGATAGTTTAGAAACAATTGTTTCTAGTATGACAGAGTTTGTCTATCTTCTTGGTGGATGTGAACGCATGTCTCCTAGACCCTACGACACGTATCTTTACTTTGATAACTTCATGTTTGGCCGGCAAGTGGAAAAGCAGCAAGTCATCAATATCTTACTGCAAGAGAATCTTCCACCTTTTGCTCCAACTGTTCTCCCGATCATTGGCCCTAGTAGAGTCGGTAAGAGAACTCTAGTTGCGCACGTATGCAACAATGAGATAGTTCGATCACACTTCTCGTCAATCTTGCACTTGAATGGTGAAAATATCATGAAAATGGAGTGTGAAACTTTCACTGAAAGGAGGGATTTGGTTGTGGTTGAGTTTACAGCAGATACGGATGATGACAATTGGAAGAAATTTTATGCATCGTGCACAAATATGGGCAGAGGAAGCAAGATTATAATTGTAAGTAGGATTGAGAAGATATCAAGGTTTGGAACAGTACGGCCAATTCATCTAAATAGTTTGTCACATGAGGAGTATAGTTACCTCTTCAAGGTACTCGCATTTGGAAGCACTAACCCAGAGGAGCATCCTCAATTGGTATCTATAGCAAATGAGCTAACAGTATTGCTCGGTGGCTCATTCATCACAGCAAACGTGTTCGCAGATATTTTCAGAAAGAATCAAAATGTTCACTTATGGCTCCATGTCTTAAAAAAATATAGAAATACGGTGCTGAAAAATTTCTCAGAGTTCAGTGAACACCCTAAGCTTCTTTTGGAGAAAGAACATCTTATAGATATAACCAAACTTGCATCGTCATCCTCTCCACTTCGTCTTATGCCTCCTCATTGTGAAGGCTATGGGTCGAAGAGGAGGTTAACCAAGGTGATGTTCAGTGACCTGATAGCTGACTCCATTGTTGTACCAAAGGAGGACTTTGAGTTAGTCGCATGGGAATCACGGATACCCCCTTATAGAAGGTTTGTAAACATTGTTTTGTATTGTGATGATGAGAAGAATTTTCAGCATGCGGACTCACTTCACAAGAAGCGTCAAAAAAATACATAA
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| Protein seq | MEVVVSAIAGDVVNRFISFLIKKYESQENLERKMERLQNLLLKVHMIVEEAEGRHITNSKMLLQFKKIVDAMYQGYHVLDIIKNSILCKSRPEEQVSSANTISAPTCYVNPFRTSQSSTIRHDQLKSTLDSLETIVSSMTEFVYLLGGCERMSPRPYDTYLYFDNFMFGRQVEKQQVINILLQENLPPFAPTVLPIIGPSRVGKRTLVAHVCNNEIVRSHFSSILHLNGENIMKMECETFTERRDLVVVEFTADTDDDNWKKFYASCTNMGRGSKIIIVSRIEKISRFGTVRPIHLNSLSHEEYSYLFKVLAFGSTNPEEHPQLVSIANELTVLLGGSFITANVFADIFRKNQNVHLWLHVLKKYRNTVLKNFSEFSEHPKLLLEKEHLIDITKLASSSSPLRLMPPHCEGYGSKRRLTKVMFSDLIADSIVVPKEDFELVAWESRIPPYRRFVNIVLYCDDEKNFQHADSLHKKRQKNT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.423763 | 1.286021 | 0.422273 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0135100 | RBH | 2.103915 | 1.913608 | 1.639272 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g04550 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0135100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001760 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001730 | RBH | 0.127493 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001710 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001690 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001680 | SBH | 1.408587 | 2.532331 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0038800 | SBH | 0.075266 | 0.29643 | 0.0200145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001870 | RBH | 0.133659 | 0.0 | 0.246328 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0042700 | SBH | 0 | 0.214642 | 0.008782 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001700 | RBH | 0.240533 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001740 | RBH | 0.046791 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001840 | RBH | 1.632522 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001680 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001800 | SBH | 0.146293 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001790 | SBH | 1.212501 | 0.0 | 0.581317 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001650 | RBH | 0.328663 | 2.733783 | 0.0 |
