Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsZS97_10G0042700		OGI:10008110 \| 16/16			Zhenshan 97 \| ZS97RS3 \| HZAU			Chr10:2594604-2599144		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		GATATGAGATTGTTGTTAAGCCAAAAAAGATGGCATTACTGCCCTTCTGTCTTGCGTTTCCATTATCTCCAACTTACCCTCCTGCTCGTCTCTTTCTTCTTCTTTTTAGCATCATCTTCCATGACCATGAGTCGATTCCTAGATTCGTGTGCATTTCCACACATCCTTGTGTAGACTATGGAAGATCAGAAGAAATTGGCAGGGTCATTACATCTCGCTAACACATTTGCTCACCAAGCAGCCATATTCTCTGATCTTCTTTCCCTCTCTAGCTTGGTGTTGATTTTCTCTAAGTAACATATTCTCTGATCTTTGTAAGCTAAAGGAGCTAGAGTTATTGGATGGAATGCTAGGAAGGGTTCCTAGCTAGTTCTACTCTGCCATGTTGGCTTCTTTGGTGGTTGGCTATGATTTTGAATTGTGCTTGGCTTGTGTTGTTTAGCTCCGAACCAGCCACGGGATTTATGTTACCCCTGTTCTATTTCACTCACTCTCAGCATATGATATGGGTAAAATGTTTGTTCTATTTTGCCTTACTTGTTGTAATTTCTTCCAATAGCTTATCTATTATATTTACTCAAAACACAAACAAGGAAAGATTAGGAATTTGAGATAGATGGAGTTGGCTCTTTTATCTGTAGTTGCAGCACACCTGGCTAATGACTTATCGGTTTTTCTCTATTTTTATCAACAAGTGTATGACAAAGTCAAGAAAATTATGATGACAAATTACCATAGAGAAGACTGCAAACAGAGTAAATCTACTGTGATCAATCTATGCAGTATTTATCAACTCAGAGGATCCTACTGCTCATGAGCCAATAGGCTGCCATCTCCTGCAAATCATCAAAAATAGAAGGTTAGCAGATGGAATTACTTGTCTCCTAACTAGTCATGAGCTTCAAAGCATATTTCAGTCCATCTGAAATCATGGGGTTTATACCTCTATTTTACTTCTGTCAGATACAAGGAATAATTATTTGAATTCAAAATCATTGCAAGATAGCTACACAAATTTGCTTGCAGTTTGTAGAATTTGCACTTGAAAACCTTCACCAGAAAACAAAATGGCCCAAAATATATACATTGGCGTTCTCACTATTCGAACAGGCCACGTGAAAAAAACAAAGCCTACAGTCTTCCCACCAAAGCAGACTAGGCTTTGTTACATGGTTGTGCCCACTATACATGGCATCAGCGGCGGAGCTACAGTGTTAGCATTGGTGTCAGGCGACACCAACGACTTTCGGCAAAATCTATGGTTAAACTACTTATCCATATATTATAACACTATAGTCTAAGTATAATTAGCATGCTATAACACCGATAGACACATTATGACACCAATGAATCATTTTTCTAGATCCGCCACTATATGGCATCATAGTTTTATATTCACAATTGCATATCTTAATCCACACACTTGGTCATATATAGTTTTGCATTGAAATTATAAAACTAGAGACAATCAGTTTTTTCCAGATTAATTCTGCTTGTCGATTCAGAACTACAGACAGCTACCTTCACTTTTAGTAGCAGATCTGAAAGCAGTGCTGCACTTGGGAAGGTCACTTGTCACAGAATATGTCTGTATGTGGATGAGTACTGAAAGAACAAAAACCTACATAGAGAAGTACATGAACTAAACATGGAAAAGTTGAAGGTTGTGGTCAAATAGATTCTACAGTGTTAACATGCATCACGGTCTATTTATAAGCCAAACATGCCGTGGGTGCGGTCTTTCCCCGTCGGTCGAGTTATTTTTTTAAGCCTCCTCACCAAGTGAATTGCCCAAGATTATGTTTATAGACATGACATTTGCATCTGGTATTCTACCAAAGAACGAGAATCAGGAAACACATCCTTATGCTACCTCAGCTTAAAAATAAATAAATAAAACTTGAGGTCCTGGCATTGACCTTTCTAAATTTTGACTGCTAGTATGTTTGAAACAATCTATATTTTTAATATGAAAAGTGTGCCATTAATTTTGACTGCTAGTTGTGTGTCCTATCAAAGTATCAAACCACTAAAAAAGAAGAGTACAGTTAATGACGCAATAAAAATTGTGGAAATCGCTTGGCAACGTCCCTTGCTCTGTTTTTTCTAACAATATGCACATCCACGGTTCTGTTTCTTGCAGCTAGCCTGGGACAATGGTACATTCCCTAGTAGATGGTTAAAGGTTTGACAAGATGAATTGGCTGAGTGAGGTAGTTTTGTTTTGCCCAGTTATCATGATTGTCAGTATCCGTTTCTTATAGGACGCATCTTTAAAAAGTCAAACCATTTTATGTGTCATAGGGCCGGGAGGCAATTTTCGCCCCACCAAATCTTTGACAACTTCAATACTACCACATGGATGTTTGTTTAATGCTAACTTTAAACTTTTGATGTCCAATGTAGCCCATAATATTTTTTATGTGTTTACTCCCTCAATTCTCCAAAAGAAATGGTAAAGGTGAGAAAATCTCATTACAAAACAATATATTATAGCTTTCTATAAATCAATGACAAATTTATCTGGTTCAATCAAAGTGGTTTTCTTGTAAAATGTCAAAATTGGGGGCTTGCTCCTTTCTAAAGATGCTCTTTATAAATTTATGGAGATCATTTTTTTTCTGTTTCAAAGGAAAAATGTTTTGGTGGACAGGTGGTCATGTATCTCCTAAATTTCATGAAAGAACCAAATGTCTCTTTCATTGTGCTGGGCACCAGAGTAACCACGCTAACCATCACGACTAGGTAGGAACACTTTTTTAATGCCCATTTGACTGCAATAGCATACTGCATCATCCTAATATCTTCTTCCTAATAAGCAGACTGATTGCAAGAGTTGAGTAAGATCCTGGATCTCTCCTTCTCGGCTTCTCAGTTTCTCTCTCTTGGCCTGTGATGGAGGCTATTGTATCAGCAATTTCTAGTGACTTTGTTAACCGATTCATATCCTTCTTGATGAAGAAGTGTGGGAGCCAACAAAATCTTGAAACAAAGATGGAAAGGCTGCAGAATCTCTTGCTCAAAGTTCACATGATCGTCGAGGAGGCTGAGGGGCGATACATCACCAACTCCAAGATGCTACTTCAGTTCAAGAAGATTGTAAAGGCCATGTACCAAGGCTACCATGTCATGGATATTATCAAGCATAGGACCCTTTGCGGCTCAAGACATGAAGAGGAGGTTAGCAGCTCCAATATTTTGTCAACCACTACATGTTATGTTAATCCTTTTCGTACTTCACAGAACGCTGCCATTAGACATGATCAGCTTCAAAACACATTGGATAGTTTAGAAACAATTGCTTCTAGTATCACAGAGTTTGTCTTTCTTCTTGGTGGATGTGAACGCATGTCTCCCAAACCTTATGACACATATCTTTACTTTGATAACTTCATGTTTGGTCGTCAAATGGAAAAGCAGCAAGTTATCAATATCTTACTGCAAGAGAATCTTCCGCATTTTTCTCCAACTGTTCTCCCAATCATCGGCCCTACTAGAGTTGGTAAGAGAACTCTAGTTGCGTATGTGTGCAACAATGAGATGGTCCGATCACATTTCTCATCAATCTTGCACTTGAATGGTGAAAACATTAGGAAAATGGAGTGTGAAAGTTTTAGTAAAAAGAGGGATTTGGTTGTGGTACAGTTCACAGCAGATACAGATGATGAGAATTGGAAGAAGTTTTATGCATCATGCACACATATGGGAAGAGGAAGCAAGATTATAGTTGTAAGTAGGAGTGAGAGGATATCAAGGTTCGGAACCGTAAGGCCAATTCATCTTAACAGTTTGTCACATGAGGAGTATAGCTACCTCTTCAAGGTTCTCGCATTTGGAAGCACTAACCCAGAGGAGCATCCTCAAATGGTGTCTATAGCAAATGAGCTGTCAGTGTTGCTCGGTGGCTCATTCGTCGCAGTGAATGTGTTTGCGGATATATTCAGAAAGAATCAAAATGTTCACTTATGGCTCCATGTCTTGAAAAAATACAGAAAAATGATTCGGAAAAATTTCTCAGAGTTCAAAGAACACCCCAAGCTTCTTTTGGACAAAGAACATCATATAGATATAACCAAACTTGCATCGTCATCCTCTCCACTTCACCTCATGCCTCCTAATTGTGAAGACAATCAGTCAAAGAGGAGCTTAACCAAGGTGATGTTCAGTGACTTCATAGCTAACTCTGTTGTTATACCAAAGGAGAACTTTGAGTTAGTCACATGGGAATCGCGGATACCCCCTTATAGAAAGTTTGTCAACATTGTTTCAAACTATGATGATGAGATGAATTTTCATCATACAGAAGTACCTCACAAAAAGCGTCAAAAATTAGATAAATAACATGATAGCAAATGAAATCAAGCAACCAATAGCTTTCTAAAGGAGAGTCGAACAAAATAGTATAATAATATAGTTGTATTTCTATTTGATAATTAACGAAGGTATCAGTTAGTTATATGCCATCGAAGTAATATATCATAGAGACTATTGTATCATATGCATTGTGAATTTGTGAATAAAGTGCTACTCCATTTCCTCAT More
CDS seq		ATGGAGGCTATTGTATCAGCAATTTCTAGTGACTTTGTTAACCGATTCATATCCTTCTTGATGAAGAAGTGTGGGAGCCAACAAAATCTTGAAACAAAGATGGAAAGGCTGCAGAATCTCTTGCTCAAAGTTCACATGATCGTCGAGGAGGCTGAGGGGCGATACATCACCAACTCCAAGATGCTACTTCAGTTCAAGAAGATTGTAAAGGCCATGTACCAAGGCTACCATGTCATGGATATTATCAAGCATAGGACCCTTTGCGGCTCAAGACATGAAGAGGAGGTTAGCAGCTCCAATATTTTGTCAACCACTACATGTTATGTTAATCCTTTTCGTACTTCACAGAACGCTGCCATTAGACATGATCAGCTTCAAAACACATTGGATAGTTTAGAAACAATTGCTTCTAGTATCACAGAGTTTGTCTTTCTTCTTGGTGGATGTGAACGCATGTCTCCCAAACCTTATGACACATATCTTTACTTTGATAACTTCATGTTTGGTCGTCAAATGGAAAAGCAGCAAGTTATCAATATCTTACTGCAAGAGAATCTTCCGCATTTTTCTCCAACTGTTCTCCCAATCATCGGCCCTACTAGAGTTGGTAAGAGAACTCTAGTTGCGTATGTGTGCAACAATGAGATGGTCCGATCACATTTCTCATCAATCTTGCACTTGAATGGTGAAAACATTAGGAAAATGGAGTGTGAAAGTTTTAGTAAAAAGAGGGATTTGGTTGTGGTACAGTTCACAGCAGATACAGATGATGAGAATTGGAAGAAGTTTTATGCATCATGCACACATATGGGAAGAGGAAGCAAGATTATAGTTGTAAGTAGGAGTGAGAGGATATCAAGGTTCGGAACCGTAAGGCCAATTCATCTTAACAGTTTGTCACATGAGGAGTATAGCTACCTCTTCAAGGTTCTCGCATTTGGAAGCACTAACCCAGAGGAGCATCCTCAAATGGTGTCTATAGCAAATGAGCTGTCAGTGTTGCTCGGTGGCTCATTCGTCGCAGTGAATGTGTTTGCGGATATATTCAGAAAGAATCAAAATGTTCACTTATGGCTCCATGTCTTGAAAAAATACAGAAAAATGATTCGGAAAAATTTCTCAGAGTTCAAAGAACACCCCAAGCTTCTTTTGGACAAAGAACATCATATAGATATAACCAAACTTGCATCGTCATCCTCTCCACTTCACCTCATGCCTCCTAATTGTGAAGACAATCAGTCAAAGAGGAGCTTAACCAAGGTGATGTTCAGTGACTTCATAGCTAACTCTGTTGTTATACCAAAGGAGAACTTTGAGTTAGTCACATGGGAATCGCGGATACCCCCTTATAGAAAGTTTGTCAACATTGTTTCAAACTATGATGATGAGATGAATTTTCATCATACAGAAGTACCTCACAAAAAGCGTCAAAAATTAGATAAATAA More
Protein seq		MEAIVSAISSDFVNRFISFLMKKCGSQQNLETKMERLQNLLLKVHMIVEEAEGRYITNSKMLLQFKKIVKAMYQGYHVMDIIKHRTLCGSRHEEEVSSSNILSTTTCYVNPFRTSQNAAIRHDQLQNTLDSLETIASSITEFVFLLGGCERMSPKPYDTYLYFDNFMFGRQMEKQQVINILLQENLPHFSPTVLPIIGPTRVGKRTLVAYVCNNEMVRSHFSSILHLNGENIRKMECESFSKKRDLVVVQFTADTDDENWKKFYASCTHMGRGSKIIVVSRSERISRFGTVRPIHLNSLSHEEYSYLFKVLAFGSTNPEEHPQMVSIANELSVLLGGSFVAVNVFADIFRKNQNVHLWLHVLKKYRKMIRKNFSEFKEHPKLLLDKEHHIDITKLASSSSPLHLMPPNCEDNQSKRSLTKVMFSDFIANSVVIPKENFELVTWESRIPPYRKFVNIVSNYDDEMNFHHTEVPHKKRQKLDK
Function		Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsZS97_10G0042700	OsZS97_10T0042700.1	Chr10	2595428	2599144	+	makerRMon
CDS seq	ATGGAGGCTATTGTATCAGCAATTTCTAGTGACTTTGTTAACCGATTCATATCCTTCTTGATGAAGAAGTGTGGGAGCCAACAAAATCTTGAAACAAAGATGGAAAGGCTGCAGAATCTCTTGCTCAAAGTTCACATGATCGTCGAGGAGGCTGAGGGGCGATACATCACCAACTCCAAGATGCTACTTCAGTTCAAGAAGATTGTAAAGGCCATGTACCAAGGCTACCATGTCATGGATATTATCAAGCATAGGACCCTTTGCGGCTCAAGACATGAAGAGGAGGTTAGCAGCTCCAATATTTTGTCAACCACTACATGTTATGTTAATCCTTTTCGTACTTCACAGAACGCTGCCATTAGACATGATCAGCTTCAAAACACATTGGATAGTTTAGAAACAATTGCTTCTAGTATCACAGAGTTTGTCTTTCTTCTTGGTGGATGTGAACGCATGTCTCCCAAACCTTATGACACATATCTTTACTTTGATAACTTCATGTTTGGTCGTCAAATGGAAAAGCAGCAAGTTATCAATATCTTACTGCAAGAGAATCTTCCGCATTTTTCTCCAACTGTTCTCCCAATCATCGGCCCTACTAGAGTTGGTAAGAGAACTCTAGTTGCGTATGTGTGCAACAATGAGATGGTCCGATCACATTTCTCATCAATCTTGCACTTGAATGGTGAAAACATTAGGAAAATGGAGTGTGAAAGTTTTAGTAAAAAGAGGGATTTGGTTGTGGTACAGTTCACAGCAGATACAGATGATGAGAATTGGAAGAAGTTTTATGCATCATGCACACATATGGGAAGAGGAAGCAAGATTATAGTTGTAAGTAGGAGTGAGAGGATATCAAGGTTCGGAACCGTAAGGCCAATTCATCTTAACAGTTTGTCACATGAGGAGTATAGCTACCTCTTCAAGGTTCTCGCATTTGGAAGCACTAACCCAGAGGAGCATCCTCAAATGGTGTCTATAGCAAATGAGCTGTCAGTGTTGCTCGGTGGCTCATTCGTCGCAGTGAATGTGTTTGCGGATATATTCAGAAAGAATCAAAATGTTCACTTATGGCTCCATGTCTTGAAAAAATACAGAAAAATGATTCGGAAAAATTTCTCAGAGTTCAAAGAACACCCCAAGCTTCTTTTGGACAAAGAACATCATATAGATATAACCAAACTTGCATCGTCATCCTCTCCACTTCACCTCATGCCTCCTAATTGTGAAGACAATCAGTCAAAGAGGAGCTTAACCAAGGTGATGTTCAGTGACTTCATAGCTAACTCTGTTGTTATACCAAAGGAGAACTTTGAGTTAGTCACATGGGAATCGCGGATACCCCCTTATAGAAAGTTTGTCAACATTGTTTCAAACTATGATGATGAGATGAATTTTCATCATACAGAAGTACCTCACAAAAAGCGTCAAAAATTAGATAAATAA More
Protein seq	MEAIVSAISSDFVNRFISFLMKKCGSQQNLETKMERLQNLLLKVHMIVEEAEGRYITNSKMLLQFKKIVKAMYQGYHVMDIIKHRTLCGSRHEEEVSSSNILSTTTCYVNPFRTSQNAAIRHDQLQNTLDSLETIASSITEFVFLLGGCERMSPKPYDTYLYFDNFMFGRQMEKQQVINILLQENLPHFSPTVLPIIGPTRVGKRTLVAYVCNNEMVRSHFSSILHLNGENIRKMECESFSKKRDLVVVQFTADTDDENWKKFYASCTHMGRGSKIIVVSRSERISRFGTVRPIHLNSLSHEEYSYLFKVLAFGSTNPEEHPQMVSIANELSVLLGGSFVAVNVFADIFRKNQNVHLWLHVLKKYRKMIRKNFSEFKEHPKLLLDKEHHIDITKLASSSSPLHLMPPNCEDNQSKRSLTKVMFSDFIANSVVIPKENFELVTWESRIPPYRKFVNIVSNYDDEMNFHHTEVPHKKRQKLDK More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsZS97_10G0042700	OsZS97_10T0042700.2	Chr10	2594604	2598944	+	makerRMon
CDS seq	ATGGAGGCTATTGTATCAGCAATTTCTAGTGACTTTGTTAACCGATTCATATCCTTCTTGATGAAGAAGTGTGGGAGCCAACAAAATCTTGAAACAAAGATGGAAAGGCTGCAGAATCTCTTGCTCAAAGTTCACATGATCGTCGAGGAGGCTGAGGGGCGATACATCACCAACTCCAAGATGCTACTTCAGTTCAAGAAGATTGTAAAGGCCATGTACCAAGGCTACCATGTCATGGATATTATCAAGCATAGGACCCTTTGCGGCTCAAGACATGAAGAGGAGGTTAGCAGCTCCAATATTTTGTCAACCACTACATGTTATGTTAATCCTTTTCGTACTTCACAGAACGCTGCCATTAGACATGATCAGCTTCAAAACACATTGGATAGTTTAGAAACAATTGCTTCTAGTATCACAGAGTTTGTCTTTCTTCTTGGTGGATGTGAACGCATGTCTCCCAAACCTTATGACACATATCTTTACTTTGATAACTTCATGTTTGGTCGTCAAATGGAAAAGCAGCAAGTTATCAATATCTTACTGCAAGAGAATCTTCCGCATTTTTCTCCAACTGTTCTCCCAATCATCGGCCCTACTAGAGTTGGTAAGAGAACTCTAGTTGCGTATGTGTGCAACAATGAGATGGTCCGATCACATTTCTCATCAATCTTGCACTTGAATGGTGAAAACATTAGGAAAATGGAGTGTGAAAGTTTTAGTAAAAAGAGGGATTTGGTTGTGGTACAGTTCACAGCAGATACAGATGATGAGAATTGGAAGAAGTTTTATGCATCATGCACACATATGGGAAGAGGAAGCAAGATTATAGTTGTAAGTAGGAGTGAGAGGATATCAAGGTTCGGAACCGTAAGGCCAATTCATCTTAACAGTTTGTCACATGAGGAGTATAGCTACCTCTTCAAGGTTCTCGCATTTGGAAGCACTAACCCAGAGGAGCATCCTCAAATGGTGTCTATAGCAAATGAGCTGTCAGTGTTGCTCGGTGGCTCATTCGTCGCAGTGAATGTGTTTGCGGATATATTCAGAAAGAATCAAAATGTTCACTTATGGCTCCATGTCTTGAAAAAATACAGAAAAATGATTCGGAAAAATTTCTCAGAGTTCAAAGAACACCCCAAGCTTCTTTTGGACAAAGAACATCATATAGATATAACCAAACTTGCATCGTCATCCTCTCCACTTCACCTCATGCCTCCTAATTGTGAAGACAATCAGTCAAAGAGGAGCTTAACCAAGGTGATGTTCAGTGACTTCATAGCTAACTCTGTTGTTATACCAAAGGAGAACTTTGAGTTAGTCACATGGGAATCGCGGATACCCCCTTATAGAAAGTTTGTCAACATTGTTTCAAACTATGATGATGAGATGAATTTTCATCATACAGAAGTACCTCACAAAAAGCGTCAAAAATTAGATAAATAA More
Protein seq	MEAIVSAISSDFVNRFISFLMKKCGSQQNLETKMERLQNLLLKVHMIVEEAEGRYITNSKMLLQFKKIVKAMYQGYHVMDIIKHRTLCGSRHEEEVSSSNILSTTTCYVNPFRTSQNAAIRHDQLQNTLDSLETIASSITEFVFLLGGCERMSPKPYDTYLYFDNFMFGRQMEKQQVINILLQENLPHFSPTVLPIIGPTRVGKRTLVAYVCNNEMVRSHFSSILHLNGENIRKMECESFSKKRDLVVVQFTADTDDENWKKFYASCTHMGRGSKIIVVSRSERISRFGTVRPIHLNSLSHEEYSYLFKVLAFGSTNPEEHPQMVSIANELSVLLGGSFVAVNVFADIFRKNQNVHLWLHVLKKYRKMIRKNFSEFKEHPKLLLDKEHHIDITKLASSSSPLHLMPPNCEDNQSKRSLTKVMFSDFIANSVVIPKENFELVTWESRIPPYRKFVNIVSNYDDEMNFHHTEVPHKKRQKLDK More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsZS97_10G0042700	OsZS97_10T0042700.3	Chr10	2596611	2598944	+	makerRMon
CDS seq	ATGGAGGCTATTGTATCAGCAATTTCTAGTGACTTTGTTAACCGATTCATATCCTTCTTGATGAAGAAGTGTGGGAGCCAACAAAATCTTGAAACAAAGATGGAAAGGCTGCAGAATCTCTTGCTCAAAGTTCACATGATCGTCGAGGAGGCTGAGGGGCGATACATCACCAACTCCAAGATGCTACTTCAGTTCAAGAAGATTGTAAAGGCCATGTACCAAGGCTACCATGTCATGGATATTATCAAGCATAGGACCCTTTGCGGCTCAAGACATGAAGAGGAGGTTAGCAGCTCCAATATTTTGTCAACCACTACATGTTATGTTAATCCTTTTCGTACTTCACAGAACGCTGCCATTAGACATGATCAGCTTCAAAACACATTGGATAGTTTAGAAACAATTGCTTCTAGTATCACAGAGTTTGTCTTTCTTCTTGGTGGATGTGAACGCATGTCTCCCAAACCTTATGACACATATCTTTACTTTGATAACTTCATGTTTGGTCGTCAAATGGAAAAGCAGCAAGTTATCAATATCTTACTGCAAGAGAATCTTCCGCATTTTTCTCCAACTGTTCTCCCAATCATCGGCCCTACTAGAGTTGGTAAGAGAACTCTAGTTGCGTATGTGTGCAACAATGAGATGGTCCGATCACATTTCTCATCAATCTTGCACTTGAATGGTGAAAACATTAGGAAAATGGAGTGTGAAAGTTTTAGTAAAAAGAGGGATTTGGTTGTGGTACAGTTCACAGCAGATACAGATGATGAGAATTGGAAGAAGTTTTATGCATCATGCACACATATGGGAAGAGGAAGCAAGATTATAGTTGTAAGTAGGAGTGAGAGGATATCAAGGTTCGGAACCGTAAGGCCAATTCATCTTAACAGTTTGTCACATGAGGAGTATAGCTACCTCTTCAAGGTTCTCGCATTTGGAAGCACTAACCCAGAGGAGCATCCTCAAATGGTGTCTATAGCAAATGAGCTGTCAGTGTTGCTCGGTGGCTCATTCGTCGCAGTGAATGTGTTTGCGGATATATTCAGAAAGAATCAAAATGTTCACTTATGGCTCCATGTCTTGAAAAAATACAGAAAAATGATTCGGAAAAATTTCTCAGAGTTCAAAGAACACCCCAAGCTTCTTTTGGACAAAGAACATCATATAGATATAACCAAACTTGCATCGTCATCCTCTCCACTTCACCTCATGCCTCCTAATTGTGAAGACAATCAGTCAAAGAGGAGCTTAACCAAGGTGATGTTCAGTGACTTCATAGCTAACTCTGTTGTTATACCAAAGGAGAACTTTGAGTTAGTCACATGGGAATCGCGGATACCCCCTTATAGAAAGTTTGTCAACATTGTTTCAAACTATGATGATGAGATGAATTTTCATCATACAGAAGTACCTCACAAAAAGCGTCAAAAATTAGATAAATAA More
Protein seq	MEAIVSAISSDFVNRFISFLMKKCGSQQNLETKMERLQNLLLKVHMIVEEAEGRYITNSKMLLQFKKIVKAMYQGYHVMDIIKHRTLCGSRHEEEVSSSNILSTTTCYVNPFRTSQNAAIRHDQLQNTLDSLETIASSITEFVFLLGGCERMSPKPYDTYLYFDNFMFGRQMEKQQVINILLQENLPHFSPTVLPIIGPTRVGKRTLVAYVCNNEMVRSHFSSILHLNGENIRKMECESFSKKRDLVVVQFTADTDDENWKKFYASCTHMGRGSKIIVVSRSERISRFGTVRPIHLNSLSHEEYSYLFKVLAFGSTNPEEHPQMVSIANELSVLLGGSFVAVNVFADIFRKNQNVHLWLHVLKKYRKMIRKNFSEFKEHPKLLLDKEHHIDITKLASSSSPLHLMPPNCEDNQSKRSLTKVMFSDFIANSVVIPKENFELVTWESRIPPYRKFVNIVSNYDDEMNFHHTEVPHKKRQKLDK More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0	0.214642	0.008782

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_10g0134900	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os10g04560	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os10g0134900	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_10g0001760	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_10g0001730	SBH	0.127493	0.0	0.000000
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_10g0001710	SBH	0.000000	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_10g0001680	SBH	0.000000	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_10g0001680	SBH	1.408587	2.532331	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_10G0038800	SBH	0.075266	0.29643	0.0200145
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_10g0001860	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_10G0042600	RBH	0.0597395	0	0.0243235
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_10g0001700	SBH	0.240533	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_10g0001740	SBH	0.046791	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_10g0001830	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_10g0001680	SBH	0.000000	0.0	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_10g0001800	RBH	0.146293	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_10G001790	RBH	1.212501	0.0	0.581317
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_10g0001640	RBH	0.0	0.000000	0.0

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.