Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g29825 | OGI:09053030 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:18135734-18136435 | ||||||||
| Gene Symbol | DUA1, OsDUA1 | ||||||||||
| DNA seq | TCACAGGAACTTTGAACTGGGAAGGAAAGCAGGCCATATGCTTATTGAGGCTGCACCAAATGATCACGCAGGGTATGTGCTGCTATCCAACATATATGCACTAGATGGAAACTGGACAGGAGTGCATAAGGTGAGGAAGCTGATGCTTGATCGTGGTGTGCAGAAGGTACCTGGAAGCAGCTCAATAGAAATTGATGGTGTAATTCATGAGTTCATATCTGGGGATAAAAGCCATTCAAGCAAGGAGGACATATACGAGATGCTAAGTGAAATGTGTCAGCAATTGAAAGTTGCAGGATATGTTCCAGATACTTCACATGTGCTACTAGATATTGATGATGAGGATGTGAAGGAGAGCTCACTAGCTCTTCACAGCGAGAAGCTTGCAATTGCCTTTGGATTGATAAGCACTGCACCAGGCACGCCTATTAGGATAGCAAAGAACCTCCGGGTTTGTGGAGATTGTCATAATGCCGTTAAACTTCTAAGCAAGATTTATGGGAGGTGCATAATTGTTAGGGATGCAAATCGATTTCATCATTTCAGAGAAGGATCATGCTCTTGCGGGGATTTCTGGTAACTTCAGTTGAGCTACAATTCTATTTCTTTGTAGTTGTAAATGTTAACACAAAAATATATGGCATGTGGGAAAAGTTTTGGAAATGGTTATAGTTGTTTGTCTGAGAACAGTTGAGGGTCTTT
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| CDS seq | ATGCTTATTGAGGCTGCACCAAATGATCACGCAGGGTATGTGCTGCTATCCAACATATATGCACTAGATGGAAACTGGACAGGAGTGCATAAGGTGAGGAAGCTGATGCTTGATCGTGGTGTGCAGAAGGTACCTGGAAGCAGCTCAATAGAAATTGATGGTGTAATTCATGAGTTCATATCTGGGGATAAAAGCCATTCAAGCAAGGAGGACATATACGAGATGCTAAGTGAAATGTGTCAGCAATTGAAAGTTGCAGGATATGTTCCAGATACTTCACATGTGCTACTAGATATTGATGATGAGGATGTGAAGGAGAGCTCACTAGCTCTTCACAGCGAGAAGCTTGCAATTGCCTTTGGATTGATAAGCACTGCACCAGGCACGCCTATTAGGATAGCAAAGAACCTCCGGGTTTGTGGAGATTGTCATAATGCCGTTAAACTTCTAAGCAAGATTTATGGGAGGTGCATAATTGTTAGGGATGCAAATCGATTTCATCATTTCAGAGAAGGATCATGCTCTTGCGGGGATTTCTGGTAA
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| Protein seq | MLIEAAPNDHAGYVLLSNIYALDGNWTGVHKVRKLMLDRGVQKVPGSSSIEIDGVIHEFISGDKSHSSKEDIYEMLSEMCQQLKVAGYVPDTSHVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIRIAKNLRVCGDCHNAVKLLSKIYGRCIIVRDANRFHHFREGSCSCGDFW |
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| Function | Pentatricopeptide repeat-containing protein At3g62890 [UniProtKB/Swiss-Prot:Q683I9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g29825 | LOC_Os09g29825.1 | Chr09 | 18135734 | 18136435 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTTATTGAGGCTGCACCAAATGATCACGCAGGGTATGTGCTGCTATCCAACATATATGCACTAGATGGAAACTGGACAGGAGTGCATAAGGTGAGGAAGCTGATGCTTGATCGTGGTGTGCAGAAGGTACCTGGAAGCAGCTCAATAGAAATTGATGGTGTAATTCATGAGTTCATATCTGGGGATAAAAGCCATTCAAGCAAGGAGGACATATACGAGATGCTAAGTGAAATGTGTCAGCAATTGAAAGTTGCAGGATATGTTCCAGATACTTCACATGTGCTACTAGATATTGATGATGAGGATGTGAAGGAGAGCTCACTAGCTCTTCACAGCGAGAAGCTTGCAATTGCCTTTGGATTGATAAGCACTGCACCAGGCACGCCTATTAGGATAGCAAAGAACCTCCGGGTTTGTGGAGATTGTCATAATGCCGTTAAACTTCTAAGCAAGATTTATGGGAGGTGCATAATTGTTAGGGATGCAAATCGATTTCATCATTTCAGAGAAGGATCATGCTCTTGCGGGGATTTCTGGTAA
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| Protein seq | MLIEAAPNDHAGYVLLSNIYALDGNWTGVHKVRKLMLDRGVQKVPGSSSIEIDGVIHEFISGDKSHSSKEDIYEMLSEMCQQLKVAGYVPDTSHVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIRIAKNLRVCGDCHNAVKLLSKIYGRCIIVRDANRFHHFREGSCSCGDFW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.469599 | 1.011960 | 0.436901 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0474051 | RBH | 0.978617 | 1.202647 | 0.746775 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g40020 | SBH | 0.273198 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0474051 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0013840 | RBH | 0.392773 | 2.590455 | 1.543405 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0013790 | RBH | 0.000000 | 1.423432 | 1.088692 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0014050 | RBH | 0.639980 | 5.645256 | 1.120918 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0020700 | SBH | 0.050728 | 0.017807 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0020940 | SBH | 1.626700 | 1.112103 | 2.076280 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0303100 | RBH | 1.9483915 | 4.3539605 | 2.0422935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0010210 | SBH | 0.060766 | 0.0 | 0.154804 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0328700 | SBH | 0.283486 | 0.283493 | 2.0025495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0020770 | SBH | 0.138428 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0013680 | RBH | 0.416862 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0013770 | RBH | 4.494446 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0020560 | SBH | 0.058294 | 0.0 | 0.072805 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0020690 | SBH | 0.206676 | 0.350657 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G014180 | RBH | 0.227405 | 1.109779 | 0.965687 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0013960 | RBH | 0.957400 | 0.0 | 5.645951 |
