Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g24414 | OGI:04046690 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:14507771-14508220 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGACAAGTTTCAAACTGGTAAAGTATACCCCTAGGATAAAGAAGAAGAAGAGTGGGCTAAGGAAACTCGCAAGAAAAGTACCAACTGATCGTCTACTTAAGTTCGAACGGGTTTTCAAAGCACAAAAACGCATCCACATGTCCGTTTTCAAAGTACAAAGAGTTCTGGATGAGATTCGTTGGCGTTACTACGAAGAAACTGTTATGATATTGAACCTCATGCCTTATCGAGCATCTTATCCCATCTTAAAGTTGGTTTATTCGGCAGCAGCAAATGCTACTCATTATAGGGATTTCGACAAAGCAAATTTATTCATCACTAAAGCCGAAGTCAGTAGGAGTACTATTATGAATAAATTCAGACCTCGGGCTCGAGGACGTAGTTCTCCCATAAAAAAAACCATGTGTCATATAACAATTGTACTAAATATAGTAAAGAAATCGAAATAA
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| CDS seq | ATGACAAGTTTCAAACTGGTAAAGTATACCCCTAGGATAAAGAAGAAGAAGAGTGGGCTAAGGAAACTCGCAAGAAAAGTACCAACTGATCGTCTACTTAAGTTCGAACGGGTTTTCAAAGCACAAAAACGCATCCACATGTCCGTTTTCAAAGTACAAAGAGTTCTGGATGAGATTCGTTGGCGTTACTACGAAGAAACTGTTATGATATTGAACCTCATGCCTTATCGAGCATCTTATCCCATCTTAAAGTTGGTTTATTCGGCAGCAGCAAATGCTACTCATTATAGGGATTTCGACAAAGCAAATTTATTCATCACTAAAGCCGAAGTCAGTAGGAGTACTATTATGAATAAATTCAGACCTCGGGCTCGAGGACGTAGTTCTCCCATAAAAAAAACCATGTGTCATATAACAATTGTACTAAATATAGTAAAGAAATCGAAATAA
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| Protein seq | MTSFKLVKYTPRIKKKKSGLRKLARKVPTDRLLKFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMNKFRPRARGRSSPIKKTMCHITIVLNIVKKSK |
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| Function | 50S ribosomal protein L22, chloroplastic [UniProtKB/Swiss-Prot:P0C446] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g24414 | LOC_Os09g24414.1 | Chr09 | 14507771 | 14508220 | + | MSU_osa1r7 | ||
| CDS seq | ATGACAAGTTTCAAACTGGTAAAGTATACCCCTAGGATAAAGAAGAAGAAGAGTGGGCTAAGGAAACTCGCAAGAAAAGTACCAACTGATCGTCTACTTAAGTTCGAACGGGTTTTCAAAGCACAAAAACGCATCCACATGTCCGTTTTCAAAGTACAAAGAGTTCTGGATGAGATTCGTTGGCGTTACTACGAAGAAACTGTTATGATATTGAACCTCATGCCTTATCGAGCATCTTATCCCATCTTAAAGTTGGTTTATTCGGCAGCAGCAAATGCTACTCATTATAGGGATTTCGACAAAGCAAATTTATTCATCACTAAAGCCGAAGTCAGTAGGAGTACTATTATGAATAAATTCAGACCTCGGGCTCGAGGACGTAGTTCTCCCATAAAAAAAACCATGTGTCATATAACAATTGTACTAAATATAGTAAAGAAATCGAAATAA
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| Protein seq | MTSFKLVKYTPRIKKKKSGLRKLARKVPTDRLLKFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMNKFRPRARGRSSPIKKTMCHITIVLNIVKKSK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 9.192000 | 11.121716 | 4.911017 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0488300 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16822 | SBH | 16.118668 | 12.975543 | 6.297682 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0488300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0026720 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026760 | SBH | 12.826227 | 16.238354 | 50.727089 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007730 | SBH | 0.000000 | 0.000000 | 1.431063 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026500 | SBH | 4.988913 | 7.561723 | 14.436198 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0006080 | SBH | 4.829108 | 0.000000 | 6.224667 |
