Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g16822 | OGI:04046690 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:9154281-9154730 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGACAAGTTTCAAACTGGTAAAGTATACCCCTAGGATAAAGAAGAAGAAGAGTGGGCTAAGGAAACTCGCAAGAAAAGTACCAACCGATCGTCTACTTAAGTTCGAACGGGTTTTCAAAGCACAAAAACGCATCCACATGTCCGTTTTCAAAGTACAAAGAGTTCTGGATGAGATTCGTTGGCGTTACTACGAAGAAACTGTTATGATATTGAACCTCATGCCTTATCGAGCATCTTATCCCATCTTAAAGTTGGTTTATTCGGCAGCAGCAAATGCTACTCATTATAGGGATTTCGACAAAGCAAATTTATTCATCACTAAAGCCGAAGTCAGTAGGAGTACTATTATGAATAAATTCAGACCTCGGGCTCGAGGACGTAGTTCTCCCATAAAAAAAACCATGTGTCATATAACAATTGTACTAAATATAGTAAAGAAATCAAAATAA
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| CDS seq | ATGACAAGTTTCAAACTGGTAAAGTATACCCCTAGGATAAAGAAGAAGAAGAGTGGGCTAAGGAAACTCGCAAGAAAAGTACCAACCGATCGTCTACTTAAGTTCGAACGGGTTTTCAAAGCACAAAAACGCATCCACATGTCCGTTTTCAAAGTACAAAGAGTTCTGGATGAGATTCGTTGGCGTTACTACGAAGAAACTGTTATGATATTGAACCTCATGCCTTATCGAGCATCTTATCCCATCTTAAAGTTGGTTTATTCGGCAGCAGCAAATGCTACTCATTATAGGGATTTCGACAAAGCAAATTTATTCATCACTAAAGCCGAAGTCAGTAGGAGTACTATTATGAATAAATTCAGACCTCGGGCTCGAGGACGTAGTTCTCCCATAAAAAAAACCATGTGTCATATAACAATTGTACTAAATATAGTAAAGAAATCAAAATAA
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| Protein seq | MTSFKLVKYTPRIKKKKSGLRKLARKVPTDRLLKFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMNKFRPRARGRSSPIKKTMCHITIVLNIVKKSK |
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| Function | 50S ribosomal protein L22, chloroplastic [UniProtKB/Swiss-Prot:P0C446] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g16822 | LOC_Os04g16822.1 | Chr04 | 9154281 | 9154730 | + | MSU_osa1r7 | ||
| CDS seq | ATGACAAGTTTCAAACTGGTAAAGTATACCCCTAGGATAAAGAAGAAGAAGAGTGGGCTAAGGAAACTCGCAAGAAAAGTACCAACCGATCGTCTACTTAAGTTCGAACGGGTTTTCAAAGCACAAAAACGCATCCACATGTCCGTTTTCAAAGTACAAAGAGTTCTGGATGAGATTCGTTGGCGTTACTACGAAGAAACTGTTATGATATTGAACCTCATGCCTTATCGAGCATCTTATCCCATCTTAAAGTTGGTTTATTCGGCAGCAGCAAATGCTACTCATTATAGGGATTTCGACAAAGCAAATTTATTCATCACTAAAGCCGAAGTCAGTAGGAGTACTATTATGAATAAATTCAGACCTCGGGCTCGAGGACGTAGTTCTCCCATAAAAAAAACCATGTGTCATATAACAATTGTACTAAATATAGTAAAGAAATCAAAATAA
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| Protein seq | MTSFKLVKYTPRIKKKKSGLRKLARKVPTDRLLKFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMNKFRPRARGRSSPIKKTMCHITIVLNIVKKSK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 16.118668 | 12.975543 | 6.297682 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0488300 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g15268 | RBH | 33.888626 | 32.611721 | 15.100524 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0488300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026710 | RBH | 0.000000 | 7.491859 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026760 | RBH | 12.826227 | 16.238354 | 50.727089 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0007690 | SBH | 3.875213 | 0.000000 | 16.922422 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020120 | RBH | 23.847536 | 4.055459 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007760 | RBH | 612.337646 | 250.229736 | 1495.301270 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0227200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007490 | RBH | 73.217873 | 14.557233 | 76.289688 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0227700 | RBH | 915.368317 | 189.7466205 | 188.2668915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019870 | RBH | 23.210346 | 0.0 | 25.288851 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007890 | RBH | 66.094704 | 80.796219 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G015410 | RBH | 44.352486 | 67.237038 | 112.592247 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025790 | RBH | 32.007370 | 97.604004 | 203.957108 |
