Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g19400 | OGI:09032520 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:11611266-11616750 | ||||||||
| Gene Symbol | OsRPK3, RPK3 | ||||||||||
| DNA seq | TCAAATAAGACGAACATCTATTCTACTATAGTTGTCGTTCTAGATTAGCAAAAAATTAAGGTTTACGGAAAATGACCATAGTACCCTCTAAATAATGTATGGTTGGTAGTTGGGGGATGGATAGAGGATATATTTAATTGGAGATGATTGATGTGACGGAAGGTATATTTTAAAACGATAAGCTTTTTATGATAAATTTTGAATTTAAAAAAGGATGGAGAGAGTAATTAAGTAGCATCCATGCTAGTAGCATTATATATATATATATATATATATATATATATATATATATGAAGAAAGACGTTCATTTCTTAAAATATCCCATATATGTGGGGGGAAACCGAGGAAGGGGACAGATCTATCCTGATGGTAGCAAGAGTAACAATACGGTCTATAATGCAACGTCAACAGGTGTAGTAAGAAAAATACTGCGTAAAGAAAAGGGGGGATATGAAATATCCATAGTCGATGCATCGGATGGACGCCAAGTGATTGATCTTATACCTCCCGGTCCAGAACTTCTTGTTTCAGAGGGGGAATCGATCAAGCTTGATCAACCATTAACAAGTAATCCTAATGTGGGAGGGTTTGGTCAGGGGGATGCAGAAATAGTGCTTCAGGATCCATTACGCGTTCAAGGCCTTTTGTTCTTCTTCGCATCCGTTATTTTGGCACAAGTTTTTTTGGTTCTCAAAAAGAAACAGTTTGAAATGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTTGTGGTCTGCTTACCGTCTTGTTGAAATGTGGTGGGAGTGTCATGGAGATGAGAGTGTAGATCTCATATGCATTGAGCATCGGGGGCAGCACGGACTCGGGCGTGGCCGCAAGAGTGACGTTGAAGTCTCCATCGATGGCCCTGTACCATCTAGTGCTGTAGACGAAACCAGCAGCCAGGTAGTGCGGCCTGTACTTGTTGGGCGGCCCGCTGTTGAAATAGACGTTAAATTCACGGACCTGGCTGTCCTGGAAGTCGGCGAAATGCAGAAACACCGCGAACTGGCGGCCTGTGTTGTCTTGCCATTTTATGTTGAGTATCGTGCTGTTCCCAGCCACTTGGACGGCATCTTTAAGAATTGCTGCGGGCACCTCGAAGCTGGATTCCAGCTTGATGTTGATCGATGTGGTGGTAAGATTCTCCCACATTGGATTATTAGTGTCCTGGTGCCACCAGTACCGATCAAATGGATCGTTAGGGTACCTATATATATGTAAAAAAAGGAACAAAAAGATTAAACATCTGAATAAAATCAGTATTATTACTAACAAAACTAGGGACGAGATGTAATAACACATATATAAACAAGAATACAGCTGCCGTTATATTGTCAGTTCTTCACAACTGGTCTACAGTAGCACTCCTAAAACTGTCTTCCATCTGCTAAAACCATTGACTTCAATTGAGGACGCGAATGGCATATACTGGGCGCTGTACTCACACGCAGATAGGCCATACGGTAAAGAGACGTGCAAATGTTTTTTTGGCAAAAAAAAATAAAAAAAGAAAAACCAGATCAATCACAGCCCGCAGAATGCTCCGAGTTACAAATTCTCCAAAACCCTGGAAACCCAATCAAAACAGGGGATGGCTATATATTACGCACACGCGCGCGGCGCGCTAGACATGTACGTCGCGCACGATGCACGGCCCACAACCATCTCTCCACCTTATCCCATCTTCCACCCCTCCCCCTCCCCCCCCCCTCTCTCTCTCCTCGGACGATGACACTCCAGTAAGCTCGATCCTTCTCCCTCCGACGAGCCCCCCTCCCCTCCGGCAAACTCCTCCAACGAAGAAGAGGGGATGAAACTGAGCAGCCTTCCACCAGTGATGATGACGATGAAGGCCTCTATCCGGCAAGCCCCATCCTCCCCCTCCGGTGAGCTTCCTACGACGAGATTGTCTGGCAACTAGGTTAGTTCTTTTTGCACCACAACCAACCCCCCCTCCCCCCCCATCCCCCTACTCACCGATGCCTCAACATGTCAGCATGGGCCCCGCTCAACCGTCCTCCTCACCCTTCACTTTACCATGCTTTACTGCCGCCACCAACACCAACCCGCCATCTGTTGCCAACTCTGTGACTCCGCCGACGGCGCCCGCTCTTATCTGCCACCCACCGCCAGTCCGTCGCCTCATAAGTCGTCCCTCTAAGCCCTGGCGCTTATCATGACGCGGTCAAGACAGCCCACACGAGTTTGCCTGCTAGCGCGTATGCGCGAATTAGCATTCTTGATCAAAACAGCAACAGAAAGACTAGATCTGTTGCTCCTAAGGCCTGAAAAACGCACAGAAGCATTCGTCTCCGCTCACTTCACCGACCGTTCGTACCCCCGAAGCATGACCAACTCAAGTAGCCCCAGCTTCCAAGTCGTCGCTCTTGGGGTCCCCGGTCTCCTCGCTAGAGGGGTTAGCGGTCCATGGCCTGCCTCCCTGCGCTAGCCTCAGCCCCTTCCCACAACGTTGCAGGCCTCTTCCCCATCCCGACCCCGATGGCCTCCTCCCCGTCCACTATGACATCTGGCCCAATTTGGATGACCCATGTGTGGCTCATGAGAGCTATGTGCACATGTTTAGTACCATATTAGTAGTTTAGCGACGTTGGAAGCAACTTATACTTCTGACGAACCTCCTCCTCCCTCCAACGAGCTTCCTCCAACGAGATCATCTGGCAACCAGGTCAGTTCTTTCTGCAGCACACCTCCCCTCCCAACCATGTCGTTGTCCGGTCTCACTGGTGCCAAAAGGCGTCAACATGCCAGCACGGCCTCCTCCCCCTCTCCTTCACCTCGCTTTGCCGCACAACCAACACTGGCCCACCGCTCGCTGTCGACCACATGGCTCCTCGGCGCCGCCCACCCTTGTTTGGTAGCCACCGCTAGTCCACCACCTCTTAGGCCATCCCTTTATGCCCGATGCACATCATGACACGGTTAGGACCATGCGCGTGAGTTCACCTGCCAGCATGTATGTGTGAATCAGCACTCCTAATCAAAACAACAACAAGTGTGTCAATCGTCCCCAATTGGAAGGCCTAGGCCCATCACCACCAGATTTGTTGCTCCTGGGCCTAGAAAACGAACAGAAGCATTTGCTTCACCGACCACTGGTATTGCCGAAGCATAGGGCTGGACGAAAAGCTCGTGACTCATTAGCTCGCTCGGCTCGTTTCTAGCTCGGCTCAGCTCGACTCGACTCGTTTGGATTTATTAACAAACCAAGGTTTCAGCTCGTTTGTTATAACGAGCTAGGTCGAGCTGACTCGCGAGCTACTCACGAGCCAAAACGAGCCAAACCAACAGCCACCTAGCCCAGGAATTAAGGAGAAGTTTGATTGTAGCCCAACAAAGCCAATAGGTCACCTGGCCCATTCGGTAGCATGGCAATGAAAAAACCCTAGGCTTTAGTCATAGCACACACGCATCACACTGATCTCTTTCTTTCTCTTGATCTCTCCCTGTTTCCCATCGCTCCACGCCGCCACAACTCCATCTCTCGTGTCCAGATCGAGAAGGAAACTTCCAGATCGAGCCACCGTCCGCCGCTCTGCCACTACACATGTGGCGTGCCTTCTCCCCGCTCCTGCGTCAGTGCCGCTCCCTACCTCAATCACTCACTGGTGTCGCTTTCTACCTCCGTCCGACGCTGCTCCCTTCTTCCCTACCTCCGTACTGCACTGCTCCCTACCTACATCAGGTGCTACTCCCTGCCTTCATCCTGTGAGGCCGCCGGCTGTGCGCTTGTCTGCTATGGGCATGGAGGATGAAGAAGAAAGAAAGCTTTTCTGTTCACTTTTTCGCTGTCACAGTAGGAAACTTTCAACTCTCTTATTTTCTTCCTCCTTTGATGGATCAAATGGTCGAAATATTTGAACTGGTGACTGAGGATGCATTTGTTGATTTGCTTGTTGGAGTGGGTACTTTGCGCATTTGCAAACTTGACTTGAGTGTCTTGGCGCACGAGTTAAACGAGCTGGCTCAAGCTTCCAACCGAGTCGAGCCGAGCTGGGCTTCTAGCTTGTTAGGATAACGAGCCGAGCCGAGCTAGCTCATTATCCTAACGAGCCAGACCGAGCGAGTCAAGCTAAGTCGAGCCAGCTCGGTATCCACCCCTACCGGAGCATGACCAGATCTAGTGGCCCCTGGCCTCCTTGTCGTTACTCTCGGTGTCCCCGGTCTCCTCGCCATAGGGGTTGGCGGTCCATGGCATGCCAAACCTGTACTGTTGGCTTCAAGCGGAATGACTAGTGCGCGAATGTGAGCCCACTAATCATCTCACGAATGGGTCACGACGAGGAGGATCAAAGGTCACTTGTCATTGTGCTTGGTCAGGAAAAATGGCACGGAAATTTACCCATCGGGTAAACGTCAAGCATGCTCATGGGAAGCTGGGCATGTAGGAGCGATAGACTGGAGTCGAGAGCGTTTATTTTATTTTGAGTGCGCCCACTAATCAGAAGTAACGAATATGCGCCAAATAGCATCCCTAGACAACCTTCTAGCGATTCAAGATGGCACAATTGATGTGAGATTGCAATTGTATATAACATTTGGATGGTTGTGTATCAAGCATAAGAGAAATCCAATGTTGCTATTTTTCCAAGTGTTATGGTTGAATGACATTAAGCTTTATAGCAATAACTACACTTAATGATTGTAAATGCATATGGTGGATGGTTAAGATCAAAGCATTAGATAGATCTAAAAGCTACTATTTTCTAAATGATATGATTCAATGTGTATCAAGCTTTTTGTTCTAACTATATAGGATATATCAATTTCAAACAGAGATTTAAACAGATGTATAACATGAATGGCATGGATTAGCAAATAGTAATTATCAGTAACACAATTATATATATACGTACCGAGTAACGCTAGCGGTCGTTGGCCCCAAATTACGCCGACGATACAAGCGAATGTACTGGTTGGCCATGACGGCCGGGTAGAGCTCGCTGCCAAGCGGCCTCAGCTCAACCGACGACGCGAATGGCGTACCCTGGCCGGTGTTCACAAGACACACGGGTGCCCAGCTTCCCCACGCCACGAACAACGCCTCGTACACCTGCCTCCCATCGGCCGGCTGCACGGTGTCCCAGTAGTTCGTCCCAATGTGCAGGTTGAACTGCAACCCAACGGAGTTGTTCTTGCCGTCGTAGTTGCCATAGACGGCCACCACCCGGACCAGATACTTGCTCCCAGCATCTGTGGGCAATGTGTAGCAGTTCCGCATGCCGGAAGGGAAGCTCCTGACGGTCAGATCAGGGCGTATATGACCTTCCTTGAGGTCGGCTGCAACCTCGTGGTTCTCCCCAGCATCAACGTACGGGCCATCGGGGACGTAGAAGATGCCTCTATCAATGTCCGTGTAGGCACCAGAGTCGGCCTCTAGACCACAGTCAATGCTCAAGAAACCTGCATATGCAGTCAT
More
|
||||||||||
| CDS seq | ATGACTGCATATGCAGGTTTCTTGAGCATTGACTGTGGTCTAGAGGCCGACTCTGGTGCCTACACGGACATTGATAGAGGCATCTTCTACGTCCCCGATGGCCCGTACGTTGATGCTGGGGAGAACCACGAGGTTGCAGCCGACCTCAAGGAAGGTCATATACGCCCTGATCTGACCGTCAGGAGCTTCCCTTCCGGCATGCGGAACTGCTACACATTGCCCACAGATGCTGGGAGCAAGTATCTGGTCCGGGTGGTGGCCGTCTATGGCAACTACGACGGCAAGAACAACTCCGTTGGGTTGCAGTTCAACCTGCACATTGGGACGAACTACTGGGACACCGTGCAGCCGGCCGATGGGAGGCAGGTGTACGAGGCGTTGTTCGTGGCGTGGGGAAGCTGGGCACCCGTGTGTCTTGTGAACACCGGCCAGGGTACGCCATTCGCGTCGTCGGTTGAGCTGAGGCCGCTTGGCAGCGAGCTCTACCCGGCCGTCATGGCCAACCAGTACATTCGCTTGTATCGTCGGCGTAATTTGGGGCCAACGACCGCTAGCGTTACTCGGAGTGCTGATTCACACATACATGCTGGCAGGTACCCTAACGATCCATTTGATCGGTACTGGTGGCACCAGGACACTAATAATCCAATGTGGGAGAATCTTACCACCACATCGATCAACATCAAGCTGGAATCCAGCTTCGAGGTGCCCGCAGCAATTCTTAAAGATGCCGTCCAAGTGGCTGGGAACAGCACGATACTCAACATAAAATGGCAAGACAACACAGGCCGCCAGTTCGCGGTGTTTCTGCATTTCGCCGACTTCCAGGACAGCCAGGTCCGTGAATTTAACGTCTATTTCAACAGCGGGCCGCCCAACAAGTACAGGCCGCACTACCTGGCTGCTGGTTTCGTCTACAGCACTAGATGGTACAGGGCCATCGATGGAGACTTCAACGTCACTCTTGCGGCCACGCCCGAGTCCGTGCTGCCCCCGATGCTCAATGCATATGAGATCTACACTCTCATCTCCATGACACTCCCACCACATTTCAACAAGACGAACGACAACTATAGTAGAATAGATGTTCGTCTTATTTGA
More
|
||||||||||
| Protein seq | MTAYAGFLSIDCGLEADSGAYTDIDRGIFYVPDGPYVDAGENHEVAADLKEGHIRPDLTVRSFPSGMRNCYTLPTDAGSKYLVRVVAVYGNYDGKNNSVGLQFNLHIGTNYWDTVQPADGRQVYEALFVAWGSWAPVCLVNTGQGTPFASSVELRPLGSELYPAVMANQYIRLYRRRNLGPTTASVTRSADSHIHAGRYPNDPFDRYWWHQDTNNPMWENLTTTSINIKLESSFEVPAAILKDAVQVAGNSTILNIKWQDNTGRQFAVFLHFADFQDSQVREFNVYFNSGPPNKYRPHYLAAGFVYSTRWYRAIDGDFNVTLAATPESVLPPMLNAYEIYTLISMTLPPHFNKTNDNYSRIDVRLI |
||||||||||
| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g51810 [UniProtKB/Swiss-Prot:Q9FZB8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g19400 | LOC_Os09g19400.1 | Chr09 | 11611266 | 11616750 | - | MSU_osa1r7 | ||
| CDS seq | ATGACTGCATATGCAGGTTTCTTGAGCATTGACTGTGGTCTAGAGGCCGACTCTGGTGCCTACACGGACATTGATAGAGGCATCTTCTACGTCCCCGATGGCCCGTACGTTGATGCTGGGGAGAACCACGAGGTTGCAGCCGACCTCAAGGAAGGTCATATACGCCCTGATCTGACCGTCAGGAGCTTCCCTTCCGGCATGCGGAACTGCTACACATTGCCCACAGATGCTGGGAGCAAGTATCTGGTCCGGGTGGTGGCCGTCTATGGCAACTACGACGGCAAGAACAACTCCGTTGGGTTGCAGTTCAACCTGCACATTGGGACGAACTACTGGGACACCGTGCAGCCGGCCGATGGGAGGCAGGTGTACGAGGCGTTGTTCGTGGCGTGGGGAAGCTGGGCACCCGTGTGTCTTGTGAACACCGGCCAGGGTACGCCATTCGCGTCGTCGGTTGAGCTGAGGCCGCTTGGCAGCGAGCTCTACCCGGCCGTCATGGCCAACCAGTACATTCGCTTGTATCGTCGGCGTAATTTGGGGCCAACGACCGCTAGCGTTACTCGGAGTGCTGATTCACACATACATGCTGGCAGGTACCCTAACGATCCATTTGATCGGTACTGGTGGCACCAGGACACTAATAATCCAATGTGGGAGAATCTTACCACCACATCGATCAACATCAAGCTGGAATCCAGCTTCGAGGTGCCCGCAGCAATTCTTAAAGATGCCGTCCAAGTGGCTGGGAACAGCACGATACTCAACATAAAATGGCAAGACAACACAGGCCGCCAGTTCGCGGTGTTTCTGCATTTCGCCGACTTCCAGGACAGCCAGGTCCGTGAATTTAACGTCTATTTCAACAGCGGGCCGCCCAACAAGTACAGGCCGCACTACCTGGCTGCTGGTTTCGTCTACAGCACTAGATGGTACAGGGCCATCGATGGAGACTTCAACGTCACTCTTGCGGCCACGCCCGAGTCCGTGCTGCCCCCGATGCTCAATGCATATGAGATCTACACTCTCATCTCCATGACACTCCCACCACATTTCAACAAGACGAACGACAACTATAGTAGAATAGATGTTCGTCTTATTTGA
More
|
|||||||
| Protein seq | MTAYAGFLSIDCGLEADSGAYTDIDRGIFYVPDGPYVDAGENHEVAADLKEGHIRPDLTVRSFPSGMRNCYTLPTDAGSKYLVRVVAVYGNYDGKNNSVGLQFNLHIGTNYWDTVQPADGRQVYEALFVAWGSWAPVCLVNTGQGTPFASSVELRPLGSELYPAVMANQYIRLYRRRNLGPTTASVTRSADSHIHAGRYPNDPFDRYWWHQDTNNPMWENLTTTSINIKLESSFEVPAAILKDAVQVAGNSTILNIKWQDNTGRQFAVFLHFADFQDSQVREFNVYFNSGPPNKYRPHYLAAGFVYSTRWYRAIDGDFNVTLAATPESVLPPMLNAYEIYTLISMTLPPHFNKTNDNYSRIDVRLI
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.275736 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0358100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g19229 | SBH | 0.057447 | 0.243104 | 0.106894 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0358100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007230 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007220 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007440 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007280 | RBH | 0.026806 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007410 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0200900 | RBH | 0.1994015 | 0.0271475 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0007390 | SBH | 1.368243 | 0.0 | 1.112859 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0177000 | RBH | 0 | 0.063366 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007330 | RBH | 0.036881 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007160 | SBH | 0.135025 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007080 | SBH | 2.983018 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0007060 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0007140 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007670 | RBH | 0.585660 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0007470 | RBH | 0.220328 | 0.0 | 0.000000 |
