Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g15860 | OGI:09029200 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:9693657-9695070 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCAGATGAGATTTGCTCGATCCAAGAAAAAATATCTCGTTGGATGTAACAATGCACATCGGAAACGATTTAGTACCGTGAGGTACCAGTACTTCAACATACATTTTGCTGGACCAGAGCAAATCTCGGATGGAGATAGCTGTTGCAACTGTCTGATTCTTTACAGTTTGTAGCATTTCAAAATATATTCTCAAAGCGTGTTTACCATGGATTGTGTTTATGAGCTATTTTTCAGAATTGTTTTTTAATAGGGTCAATTGTGTTATTACCCCTACTCTCATGTGCAATTGTGATTTTATCCCTGTTTTTTAGGGTTTGTGATTTTACCCCTGTTTATTTGAAATGAAGCTATGGTTTACCCCTGTTATGTTAAGTCATCCAAACGGTGTTAAATTTGTCAAAAATGACATGTATGCCCTTGCAAAATTGCCCCATGCTCTACTGAGAACTTTGCAATTTTACTCTTTTTTTTTTACATCAAGAACAGAAGTTAATAGGATTCACTGGATGGAAAAAATTCACCAAAATTATTCATCAATACAGTCATGCACCGGGAAAAAAAATCATCGTGCAAATTCCTGGCAAATAGTACTACAGTACTGAGACCGGAAAAAGAAAAAAAAAGAAAAGAAAAACAGAGGCCTCGCTGTTGTTATTTGGTTCAAGGGTATAATGGTCCATCCACACTTTTTTCAGTAATTTAATCTATTTTTTTACTCTCTTATTTTAGGGCCACCAAACGTCCATCCAAAGCAAGGGTAAACGGAAGCTTCGTTTCGAAAAAGTAGAGGTAAAATCACAAACCCTGAAAAACAAGAGTAAAATTATAATTGTATATGAAAGTAGGGGTAAGAACACAATTGCCCCTTTTTAATATAGAATCATTAAAATCTTGTGAATTTTATGGAACTTGTGGGAAAAAAATTCAGATCATCATCCAGATACATGATGAAAAAGAGAAATGTATGAAGAAGACGATGAAAAAGGCGATGAAAAAGGCGGCTAGTGTCACCGGTACGCACATACCTTCACAATATATATGCTAGTCTGAAATTGTAGTTGTTCTTCCGTTTTTCTTCGCGAACATCATTCCGTTGATTCGAGAGGTAGCGTTTTGATGCAGGCGTGCAATCGGTGACGCTGTGTGGCGGCAACAGGAACCTGCTGATGGTGATCGGTGAGGGTGTGGACACCAACAAGCTCCTGAAGAAACTCAGAAACAATGTAGGCGCCGCTGATATCGTGGAGACGATGCCGGCGGAGGCCGAAGAGTTCGAGGCAGCAGCAGCAGTCTCCGGAAGCAAGAACTTCATGAAGATGATGCCGCGGTGGCCGAAGAGCTGGTCGTTTGTGAAACAAGAAAGCTTGGTCGATCAACTTAACTTCCCACGCCACAGTTTAGGCGTGTGCTAA
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| CDS seq | ATGCAGATGAGATTTGCTCGATCCAAGAAAAAATATCTCGTTGGATGTAACAATGCACATCGGAAACGATTTAGTACCGGCCACCAAACGTCCATCCAAAGCAAGGGTAAACGGAAGCTTCGTTTCGAAAAAGTAGAGATCATCATCCAGATACATGATGAAAAAGAGAAATGTATGAAGAAGACGATGAAAAAGGCGATGAAAAAGGCGGCTAGTGTCACCGGCGTGCAATCGGTGACGCTGTGTGGCGGCAACAGGAACCTGCTGATGGTGATCGGTGAGGGTGTGGACACCAACAAGCTCCTGAAGAAACTCAGAAACAATGTAGGCGCCGCTGATATCGTGGAGACGATGCCGGCGGAGGCCGAAGAGTTCGAGGCAGCAGCAGCAGTCTCCGGAAGCAAGAACTTCATGAAGATGATGCCGCGGTGGCCGAAGAGCTGGTCGTTTGTGAAACAAGAAAGCTTGGTCGATCAACTTAACTTCCCACGCCACAGTTTAGGCGTGTGCTAA
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| Protein seq | MQMRFARSKKKYLVGCNNAHRKRFSTGHQTSIQSKGKRKLRFEKVEIIIQIHDEKEKCMKKTMKKAMKKAASVTGVQSVTLCGGNRNLLMVIGEGVDTNKLLKKLRNNVGAADIVETMPAEAEEFEAAAAVSGSKNFMKMMPRWPKSWSFVKQESLVDQLNFPRHSLGVC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g15860 | LOC_Os09g15860.1 | Chr09 | 9693657 | 9695070 | + | MSU_osa1r7 | ||
| CDS seq | ATGCAGATGAGATTTGCTCGATCCAAGAAAAAATATCTCGTTGGATGTAACAATGCACATCGGAAACGATTTAGTACCGGCCACCAAACGTCCATCCAAAGCAAGGGTAAACGGAAGCTTCGTTTCGAAAAAGTAGAGATCATCATCCAGATACATGATGAAAAAGAGAAATGTATGAAGAAGACGATGAAAAAGGCGATGAAAAAGGCGGCTAGTGTCACCGGCGTGCAATCGGTGACGCTGTGTGGCGGCAACAGGAACCTGCTGATGGTGATCGGTGAGGGTGTGGACACCAACAAGCTCCTGAAGAAACTCAGAAACAATGTAGGCGCCGCTGATATCGTGGAGACGATGCCGGCGGAGGCCGAAGAGTTCGAGGCAGCAGCAGCAGTCTCCGGAAGCAAGAACTTCATGAAGATGATGCCGCGGTGGCCGAAGAGCTGGTCGTTTGTGAAACAAGAAAGCTTGGTCGATCAACTTAACTTCCCACGCCACAGTTTAGGCGTGTGCTAA
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| Protein seq | MQMRFARSKKKYLVGCNNAHRKRFSTGHQTSIQSKGKRKLRFEKVEIIIQIHDEKEKCMKKTMKKAMKKAASVTGVQSVTLCGGNRNLLMVIGEGVDTNKLLKKLRNNVGAADIVETMPAEAEEFEAAAAVSGSKNFMKMMPRWPKSWSFVKQESLVDQLNFPRHSLGVC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.201981 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0328066 | SBH | 0.489638 | 0.000000 | 1.877579 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0328066 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005820 | SBH | 0.258353 | 6.941268 | 0.191661 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0006030 | SBH | 1.090265 | 5.044453 | 2.085904 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005910 | SBH | 0.103949 | 0.172123 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006090 | SBH | 3.981910 | 5.575424 | 5.239952 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006250 | SBH | 0.425158 | 0.228033 | 0.524411 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0149300 | RBH | 3.2189195 | 6.4806275 | 6.141966 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005910 | SBH | 0.464224 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005880 | SBH | 4.269138 | 11.507568 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0005760 | SBH | 0.442855 | 0.0 | 0.526122 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0005850 | SBH | 0.251985 | 6.508630 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
