Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g11850 | OGI:09020770 | 4/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:6643023-6646354 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAATAAGGGTAAGAGAGCATAGTAAGGTAATTGTGGTAAATGTATGACAGATGATCCATATATGTCGTGGTTGGTAGCAGTGGACGATCTTTAATGTTGTTCAGTTCGGAGTTGATCAAAATTCCGGCTAAGTCCTGTCGAAATGTTTTTACTTCCTTCTGCATAATGTAAAGGGAGTGCATTTTAAATGGTTTTTCGTATTAGGAAGCAGTGGTGCAAAATATGAATAGAGGTTGTTGTAGTTACCTGTAGTTGAATTTTTAGGAGATAAGATCCAGTCCAATGCTCCATGAACTTAAGGGTGTACAGGCCGCATGAGACGCTACAAGAATTTAGTCGTTAGGATAACACGTTTCCGTATTTGAATAATGTGAATATCATGTGGAAGAGTTTGAGTCACCCACCCGTCTCCTTGCTTTGGCAATTTTTGGACTTTGTTGTACTCCCATTCGGTAATATTGAAATCAGGCCAATCGTGTTTTAACTGTGGGTGCTGATTCTCTGTCCCGTATAATCCCCTCTCGATAGCTAGCAGCTGGGAAGTTTTGTGCAACGTTGGTACGGTTAAAATATAGCAAAACCGATTTGAATTATACAAGTGGAAGTGTATCGCTTACCACACGCCTTAGATCGGGTCGATCTTTACTGATTGGCTTTGCGAGCGAATCTAGTATTTGCACCTCACGTCGCTTGGCGTTAAGAACGGCTAGGTACCAGTGTGTATCTTTAATATTAATTGGGAGGAAAATCTGCAGATGTTCAACAGTAAGATTGAGTCATAAATTGAATTACCCATTACATAGATAGCTTAAATAAGTATTACCATGTCAAATGGTAGATAGTCGCATGCCATATCTCTAATCCATCGTTTATCTCGAGGTTCGCTTGCTTCGACATGCGCTCCCTCTACATTTAGTAGACCTGTTTTAATGGCCATCTCTAGGAAGGCCTTGCCATCTCCCCTGATTCCTTTCTCTTTATAGCGGAGGCATTGGATGTATGCATCCATGACCTGAATTTGAGTTTAGTTGAGTTACATAACAAATATAGTTATAAAAGAATAGTAGGCTTGTTAAATAGGCGAACTTACATCATCATTCAAGAAAGCTGGTTGTGTTAGTACTTTCATTTTTTTCCGTTTAACCTCCACTTCTTCAATATGCACCATCACTTTGTTATCGTCGGTGTTATTAATGTAGGTAATGAAAGGGTCTTCTTTTTTAGTCAACTCTACATAGGTACGACAAATTAGTAATAGATCTATATAAATGTTAAATGGTTAGGCATTACCTTCTGAATTTTTTAACGGTGTCTGGCCATTCGTTTTTGTCTTATTTTGACCTCTTAAGGCGTTCTTCGGTGGGCCTTTGTCTATGATTTGTTGGGTAAGATCTTCCTTCTCGATGTACACTAGAAAAGGGTAAGTCAAATCAGTAACACAGAAACATAGAATATAAGTTAAAATTTATGGATGATGTAGAGAGTTCATACATTCAGATATTTCATACGGTGTTTGGTTGTTTTGTTTCCTCTTTTTTTCACACCGTAGTTCGTCTGTGTCTGGCATGTAAGCTTCTTTATTCGTTTGCGCTTGAAAAGGAGGAAAGTTAGTACCATTGACATGAGCATATGTAAATATGAAATAGCATAGTACCTATCGTTTTCTTTGTCTGTGCTTGGGTTCTTATTATGTCCTTCTTTTTACCCCTTGTTTCGTAGATGAAGTCAGTCCAATTAGTTGGTTTGTATGTTCTTCCTGTAGGACCTGTAAGCCTCTTCCTGCTTTGATTGCTCTGGTTACTGTTGTCCTGTTAGGTAAGAAAGTACACGTCAGTATTATGATAAGATGTAGTAACGTTAGCGAGAGAAATAAAATTTAGTTTACCTTCGTTTCACAAGTCATGTTTACATTTTGGTTTATATAGGACTCTTCGTTATGATTTGATACATGCTCCCTGGGATCATTTTGTTCTTGTTCAACATCCTGCAATAGCGTCAATCTTTTTTTAGCGGTGTATATATGTAAGTAATAATGATTAACAGTCTAGCATATGATGTTTACCTCAAACACATGCGTACTATCTTTTCGCTTTGGGCATTTTGAATCATTTTCCATGCAATCTAGTATCAATGATCGCATACGTGGCCAAAAATCCTTTGTGAAATCTTTGAAATTATCTTGTAAAGTTTGGATGCTTTCTTGTAACCTTTCTTGTAAAGTGATGTCGGCTGATGGTTCAGTGGATGTTATAGAGTGTATCTGAATAGCACAAGTTAGAAAAGGATGTCAAACATATTTTGTTAAATAGAGTTCGTATTAAAACCCCATAATATATACCTCTTCAGAAGTGCCTTGAAAATCTTCATTGCTATGTGTTTCTGAGTCATTGTCGTGCGCTTTTTCATTGGGGATTTCATTGCAATGTATAGTTCCCCTAATATCGTCGACAACCTATTTTTAGTGAAAAAGGGGTATTAGAGATTTTACAGACAGTTGATATAATTAGTACATAGTATTAAAAATGAGATAGTTACCTTCCCTTGTCCAAAAAGGTAAGAAATTCGCTTTTTTTCTTTTTTTTTATCCCAGTACTGAATTAGTGGCCTTTGACGGCTAGAATGATATATTGTCGCAGCCAATTTATCTATTCGCACTTTTTCCCAATACCAAATCTGCAAGCATTTGAACATTAGATAATGAGTATTGCTATGAAAATATGTTCATGACAATTTTGTAAACATACTAAATTTTGAAACGAACCTGTAAGAGGCATACGTTCCCCTCAATGTTTGTTGTCTTCTCTCTAAATTTTATTATGCCTTTCAGTAACTGATTCAGTGTTAGACTAGACCAGTTTAGTTCCCTCATTTTGTCAACGTCGTCGACGAGATTGAGATATTCTGAGCGCACATATCTTTGAGTTGTAGGACATATGAATGATCCAATTGAGAAAAGAATAAATCTTCGAATGAAGTGGTCATCGTAGCTCGAGGAGTTGATTATTGCTTCCCGTAATGCTTGTAAAGTAATTGTTGTTTGGCCTTCCTTTTTGTACAGGTTGAACAATTCTGGTTTATTGATTTTTGGTGCCTCAAATATGTCATCTCCTTTTGATGGCAGTCCAAGCAAACAATCAACATCATCGAGTGTCATCGTTACGAAGGTACCATTAATATTGAATGCTTTCTTCTCCTTGTCATAGCTTCTTGCAATCTCATTGCACAAGTTTCGGTCAATATGTATGTTGTCAATCTTTAGCAAGTTGCCAAGACCTGAACCCTCGATAGCTTCCTTTTGACGTGGACTTAGATGGAGTATTACCTCGTACAT
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| CDS seq | ATGTACGAGGTAATACTCCATCTAAGTCCACGTCAAAAGGAAGCTATCGAGGGTTCAGGTCTTGGCAACTTGCTAAAGATTGACAACATACATATTGACCGAAACTTGTGCAATGAGATTGCAAGAAGCTATGACAAGGAGAAGAAAGCATTCAATATTAATGGTACCTTCGTAACGATGACACTCGATGATGTTGATTGTTTGCTTGGACTGCCATCAAAAGGAGATGACATATTTGAGGCACCAAAAATCAATAAACCAGAATTGTTCAACCTGTACAAAAAGGAAGGCCAAACAACAATTACTTTACAAGCATTACGGGAAGCAATAATCAACTCCTCGAGCTACGATGACCACTTCATTCGAAGATTTATTCTTTTCTCAATTGGATCATTCATATGTCCTACAACTCAAAGATATGTGCGCTCAGAATATCTCAATCTCGTCGACGACGTTGACAAAATGAGGGAACTAAACTGGTCTAGTCTAACACTGAATCAGTTACTGAAAGGCATAATAAAATTTAGAGAGAAGACAACAAACATTGAGGGGAACGTATGCCTCTTACAGATTTGGTATTGGGAAAAAGTGCGAATAGATAAATTGGCTGCGACAATATATCATTCTAGCCGTCAAAGGCCACTAATTCAGTACTGGGATAAAAAAAAAGAAAAAAAGCGAATTTCTTACCTTTTTGGACAAGGGAAGGTTGTCGACGATATTAGGGGAACTATACATTGCAATGAAATCCCCAATGAAAAAGCGCACGACAATGACTCAGAAACACATAGCAATGAAGATTTTCAAGGCACTTCTGAAGAGGATGTTGAACAAGAACAAAATGATCCCAGGGAGCATGTATCAAATCATAACGAAGAGTCCTATATAAACCAAAATGTAAACATGACTTGTGAAACGAAGGACAACAGTAACCAGAGCAATCAAAGCAGGAAGAGGCTTACAGGTCCTACAGGAAGAACATACAAACCAACTAATTGGACTGACTTCATCTACGAAACAAGGGGTAAAAAGAAGGACATAATAAGAACCCAAGCACAGACAAAGAAAACGATAGTGTACATCGAGAAGGAAGATCTTACCCAACAAATCATAGACAAAGGCCCACCGAAGAACGCCTTAAGAGGTCAAAATAAGACAAAAACGAATGGCCAGACACCGTTAAAAAATTCAGAAGAGTTGACTAAAAAAGAAGACCCTTTCATTACCTACATTAATAACACCGACGATAACAAAGTGATGGTGCATATTGAAGAAGTGGAGGTTAAACGGAAAAAAATGAAAGTACTAACACAACCAGCTTTCTTGAATGATGATGTCATGGATGCATACATCCAATGCCTCCGCTATAAAGAGAAAGGAATCAGGGGAGATGGCAAGGCCTTCCTAGAGATGGCCATTAAAACAGGTCTACTAAATGTAGAGGGAGCGCATGTCGAAGCAAGCGAACCTCGAGATAAACGATGGATTAGAGATATGGCATGCGACTATCTACCATTTGACATGATTTTCCTCCCAATTAATATTAAAGATACACACTGGTACCTAGCCGTTCTTAACGCCAAGCGACGTGAGGTGCAAATACTAGATTCGCTCGCAAAGCCAATCAGTAAAGATCGACCCGATCTAAGGCGTGTGCTGCTAGCTATCGAGAGGGGATTATACGGGACAGAGAATCAGCACCCACAGTTAAAACACGATTGGCCTGATTTCAATATTACCGAATGGGAGTACAACAAAGTCCAAAAATTGCCAAAGCAAGGAGACGGCGTCTCATGCGGCCTGTACACCCTTAAGTTCATGGAGCATTGGACTGGATCTTATCTCCTAAAAATTCAACTACAGAAGGAAGTAAAAACATTTCGACAGGACTTAGCCGGAATTTTGATCAACTCCGAACTGAACAACATTAAAGATCGTCCACTGCTACCAACCACGACATATATGGATCATCTGTCATACATTTACCACAATTACCTTACTATGCTCTCTTACCCTTATTAA
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| Protein seq | MYEVILHLSPRQKEAIEGSGLGNLLKIDNIHIDRNLCNEIARSYDKEKKAFNINGTFVTMTLDDVDCLLGLPSKGDDIFEAPKINKPELFNLYKKEGQTTITLQALREAIINSSSYDDHFIRRFILFSIGSFICPTTQRYVRSEYLNLVDDVDKMRELNWSSLTLNQLLKGIIKFREKTTNIEGNVCLLQIWYWEKVRIDKLAATIYHSSRQRPLIQYWDKKKEKKRISYLFGQGKVVDDIRGTIHCNEIPNEKAHDNDSETHSNEDFQGTSEEDVEQEQNDPREHVSNHNEESYINQNVNMTCETKDNSNQSNQSRKRLTGPTGRTYKPTNWTDFIYETRGKKKDIIRTQAQTKKTIVYIEKEDLTQQIIDKGPPKNALRGQNKTKTNGQTPLKNSEELTKKEDPFITYINNTDDNKVMVHIEEVEVKRKKMKVLTQPAFLNDDVMDAYIQCLRYKEKGIRGDGKAFLEMAIKTGLLNVEGAHVEASEPRDKRWIRDMACDYLPFDMIFLPINIKDTHWYLAVLNAKRREVQILDSLAKPISKDRPDLRRVLLAIERGLYGTENQHPQLKHDWPDFNITEWEYNKVQKLPKQGDGVSCGLYTLKFMEHWTGSYLLKIQLQKEVKTFRQDLAGILINSELNNIKDRPLLPTTTYMDHLSYIYHNYLTMLSYPY |
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| Function | Putative ubiquitin-like-specific protease 1B [UniProtKB/Swiss-Prot:O65278] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g11850 | LOC_Os09g11850.1 | Chr09 | 6643023 | 6646354 | - | MSU_osa1r7 | ||
| CDS seq | ATGTACGAGGTAATACTCCATCTAAGTCCACGTCAAAAGGAAGCTATCGAGGGTTCAGGTCTTGGCAACTTGCTAAAGATTGACAACATACATATTGACCGAAACTTGTGCAATGAGATTGCAAGAAGCTATGACAAGGAGAAGAAAGCATTCAATATTAATGGTACCTTCGTAACGATGACACTCGATGATGTTGATTGTTTGCTTGGACTGCCATCAAAAGGAGATGACATATTTGAGGCACCAAAAATCAATAAACCAGAATTGTTCAACCTGTACAAAAAGGAAGGCCAAACAACAATTACTTTACAAGCATTACGGGAAGCAATAATCAACTCCTCGAGCTACGATGACCACTTCATTCGAAGATTTATTCTTTTCTCAATTGGATCATTCATATGTCCTACAACTCAAAGATATGTGCGCTCAGAATATCTCAATCTCGTCGACGACGTTGACAAAATGAGGGAACTAAACTGGTCTAGTCTAACACTGAATCAGTTACTGAAAGGCATAATAAAATTTAGAGAGAAGACAACAAACATTGAGGGGAACGTATGCCTCTTACAGATTTGGTATTGGGAAAAAGTGCGAATAGATAAATTGGCTGCGACAATATATCATTCTAGCCGTCAAAGGCCACTAATTCAGTACTGGGATAAAAAAAAAGAAAAAAAGCGAATTTCTTACCTTTTTGGACAAGGGAAGGTTGTCGACGATATTAGGGGAACTATACATTGCAATGAAATCCCCAATGAAAAAGCGCACGACAATGACTCAGAAACACATAGCAATGAAGATTTTCAAGGCACTTCTGAAGAGGATGTTGAACAAGAACAAAATGATCCCAGGGAGCATGTATCAAATCATAACGAAGAGTCCTATATAAACCAAAATGTAAACATGACTTGTGAAACGAAGGACAACAGTAACCAGAGCAATCAAAGCAGGAAGAGGCTTACAGGTCCTACAGGAAGAACATACAAACCAACTAATTGGACTGACTTCATCTACGAAACAAGGGGTAAAAAGAAGGACATAATAAGAACCCAAGCACAGACAAAGAAAACGATAGTGTACATCGAGAAGGAAGATCTTACCCAACAAATCATAGACAAAGGCCCACCGAAGAACGCCTTAAGAGGTCAAAATAAGACAAAAACGAATGGCCAGACACCGTTAAAAAATTCAGAAGAGTTGACTAAAAAAGAAGACCCTTTCATTACCTACATTAATAACACCGACGATAACAAAGTGATGGTGCATATTGAAGAAGTGGAGGTTAAACGGAAAAAAATGAAAGTACTAACACAACCAGCTTTCTTGAATGATGATGTCATGGATGCATACATCCAATGCCTCCGCTATAAAGAGAAAGGAATCAGGGGAGATGGCAAGGCCTTCCTAGAGATGGCCATTAAAACAGGTCTACTAAATGTAGAGGGAGCGCATGTCGAAGCAAGCGAACCTCGAGATAAACGATGGATTAGAGATATGGCATGCGACTATCTACCATTTGACATGATTTTCCTCCCAATTAATATTAAAGATACACACTGGTACCTAGCCGTTCTTAACGCCAAGCGACGTGAGGTGCAAATACTAGATTCGCTCGCAAAGCCAATCAGTAAAGATCGACCCGATCTAAGGCGTGTGCTGCTAGCTATCGAGAGGGGATTATACGGGACAGAGAATCAGCACCCACAGTTAAAACACGATTGGCCTGATTTCAATATTACCGAATGGGAGTACAACAAAGTCCAAAAATTGCCAAAGCAAGGAGACGGCGTCTCATGCGGCCTGTACACCCTTAAGTTCATGGAGCATTGGACTGGATCTTATCTCCTAAAAATTCAACTACAGAAGGAAGTAAAAACATTTCGACAGGACTTAGCCGGAATTTTGATCAACTCCGAACTGAACAACATTAAAGATCGTCCACTGCTACCAACCACGACATATATGGATCATCTGTCATACATTTACCACAATTACCTTACTATGCTCTCTTACCCTTATTAA
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| Protein seq | MYEVILHLSPRQKEAIEGSGLGNLLKIDNIHIDRNLCNEIARSYDKEKKAFNINGTFVTMTLDDVDCLLGLPSKGDDIFEAPKINKPELFNLYKKEGQTTITLQALREAIINSSSYDDHFIRRFILFSIGSFICPTTQRYVRSEYLNLVDDVDKMRELNWSSLTLNQLLKGIIKFREKTTNIEGNVCLLQIWYWEKVRIDKLAATIYHSSRQRPLIQYWDKKKEKKRISYLFGQGKVVDDIRGTIHCNEIPNEKAHDNDSETHSNEDFQGTSEEDVEQEQNDPREHVSNHNEESYINQNVNMTCETKDNSNQSNQSRKRLTGPTGRTYKPTNWTDFIYETRGKKKDIIRTQAQTKKTIVYIEKEDLTQQIIDKGPPKNALRGQNKTKTNGQTPLKNSEELTKKEDPFITYINNTDDNKVMVHIEEVEVKRKKMKVLTQPAFLNDDVMDAYIQCLRYKEKGIRGDGKAFLEMAIKTGLLNVEGAHVEASEPRDKRWIRDMACDYLPFDMIFLPINIKDTHWYLAVLNAKRREVQILDSLAKPISKDRPDLRRVLLAIERGLYGTENQHPQLKHDWPDFNITEWEYNKVQKLPKQGDGVSCGLYTLKFMEHWTGSYLLKIQLQKEVKTFRQDLAGILINSELNNIKDRPLLPTTTYMDHLSYIYHNYLTMLSYPY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g11860 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0004300 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0004540 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0004610 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0004010 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011250 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0117600 | RBH | 0 | 0 | 0.036804 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0004390 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0105100 | SBH | 0 | 0 | 0.0043675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0004120 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011020 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0003580 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0011670 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026470 | SBH | 0.707796 | 2.607033 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011130 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026430 | SBH | 0.0 | 0.0 | 0.0 |
