Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
LOC_Os08g42470 | OGI:08076310 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:26841064-26843299 | ||||||||
Gene Symbol | OsbHLH080 | ||||||||||
DNA seq | TTAGGAACAGTAGCAATAGCTCTCTTTTTATATTAACAAAATAATTTCATGAAGTAGAGTACAATGGTGGTGGCAGTGCAGCCGTTGAGGAAATCTTCATGGGCAGAACCTAACCAAATAAGGAGCTACAAAATATTACAAAGTCTCTGAAAAATGTGTAGAAAACTCTACTCGCTTGCTGTTCTTCCCTCCAAAATCCTCTTACAATGTTGTAGACTGCCTCCAGACAAGGGGATGGACTAGATCCAACATCTCAAACTTATCTGGTGCATTGCATGCTCCTACCAATCTTGCAGCATTATTATTTCCTCCTGTTCAAAATTTCAGAAGACTTTTATATATTAGAAGAAGCAGTTAAGAGAAAATTTACAGTAGTAAATCCAATATTCAGGGTCTCACAAAGTCACAATTAATGAACTTTGGTTGCAGTACCTATTGTCAATGTGGGGTCCTTTTTTCTTGCTTTCTCTGTCACTCTTCCCCTACTGGAAAGAGCACATGTTGTTGAACACCAATTGATTGAGCATCTCCTGCTGCCTTGGCTCCCCCACTGCTTGCATCAGGTAACTGCCATTGTCCTGAAAGGGGATGCACACATTCAGTGATGACCTCAGGTGGGTAAAATTGTTGGATTTTTTTTACTTTGATGCCATGATATATGTAGCTAAATTGGGACATTTTCATGTATGATTTAGCCAAAGAAAGGTGGACATGTGCCAACCTGAGAGAAAGAGATGGCTCCATGCTGGCTTTGCAGTGAGTAGGATGTGGTTGAGGTTGTGTCCATGATAGCTTGAGATGGAGCTGGGCTTGATTGGTTCAGTACTGGATTAGGCATTGCAAGGGCTTCTTGGAACATGCCTCCAATCTTCTGAAAAAGATTAAGAACATTAATCTAACTTTACACAAGAAATTAATTTTAGGCATATTTAGTTCAAGGTACAAATATTTATTTAGATATTTACTTGGTCATGGAGGCCATCGCTGTCCATTCCAAAGCCATACAACACTGGGCTCATTGAAGCAATCCTCATGGATAGGAACTGCACCATATAGACAAAACAAAGAAAATGTCATCCTGTCCAAAGTTTTCAAAAATGAAGTATTACTTCTTTTTTTTATTTTTTTTTAGTGTACCTCAACTTGGTTCTGCAACGACTGTACATAGTTGATGATCTCATCCAAAATGAGAGCCTTTCCAGTAACCTGAAGAAAAGCACAGTTGTTTCTTATCAAAGTTAGAGCCATGCATTAGCAAGATGTCACTACAACTGTACAACTCAACAATAATTACTCTCAAAAATAAAAATGAGAGGAAAGAATTGAACTAGAGCATGTAATAGTTAAATAGTAACCAACTTATTTTTTACCTTGTCACAACCAGGGACCAGTGCTTGCAGCATCCTCATCCTCTCACTGATCCTCTCCCTCCTCACCTGTAGAGAGAAAATGTCACCAAGAATCAGAGACCAGGAGAAAAGATGCAGAAGCTGCAAGCCAAAAACCACTCATGCAAAAGCAGCAGAAAAATCAAAACCAAAACCAAAGTGAAGTGCAGTAGTAGTACCCTCTCTGCAAGGCTGTGGCTATCAGTTGCCTGTCCTCTCCTTGCCCTCACATGGATGTACCCTTTTGGAGGCTCATCTTCAGTGGTGCTCTTCTCCTCCACTTCTTTGCTGGCCTTCTTCCCTCTCCTGCTCTTGCCATCCTTGCAGCTATCCTGCTTGCAAAAACCCAGAATTCAGAAACCAGAATGCAACTAACAATGTTCTCTTTCAGAGATGCAAACAAGAATGCCAATGTCAATAATGTCAATGCTTTGGTTGTGTCAGTTGTTAGCTACCTTGGAGTGTGCACTGTCTTCTGCTGCCTTCCTCTTCCTGTCCACAGATGGAGAGGTGTCAAGAACTGCAGACACTGAGCTCTCCAATGAGGCATCCTCCACAATGGCTGCTGCTGCTGCATTGGCAGGTTGTGGAGCTTGGGAGCCATGGCTGTGGTTGTAGAGGAAGAAGCTTGAGATGTTGGGGTCATTGGTGGTGGCGATGGCTGCTCCAGCAGCAGTAGCCTTGAGGAGGAGAGAGTGGTGTGGTGAGAAGTCTGCCATTGCTTTGCTGCTGCTGAACTCTCTGTGTCTGAAACTTTTTGGTGTTGTTGATTGGAAGTTTGGTTTCTTCAGAGAAAAGAGGAGTACTACTTCTTCTTGGCAGAGGCTAAAGAGTAGAGCAAGTTTGGC
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CDS seq | ATGGCAGACTTCTCACCACACCACTCTCTCCTCCTCAAGGCTACTGCTGCTGGAGCAGCCATCGCCACCACCAATGACCCCAACATCTCAAGCTTCTTCCTCTACAACCACAGCCATGGCTCCCAAGCTCCACAACCTGCCAATGCAGCAGCAGCAGCCATTGTGGAGGATGCCTCATTGGAGAGCTCAGTGTCTGCAGTTCTTGACACCTCTCCATCTGTGGACAGGAAGAGGAAGGCAGCAGAAGACAGTGCACACTCCAAGGATAGCTGCAAGGATGGCAAGAGCAGGAGAGGGAAGAAGGCCAGCAAAGAAGTGGAGGAGAAGAGCACCACTGAAGATGAGCCTCCAAAAGGGTACATCCATGTGAGGGCAAGGAGAGGACAGGCAACTGATAGCCACAGCCTTGCAGAGAGGGTGAGGAGGGAGAGGATCAGTGAGAGGATGAGGATGCTGCAAGCACTGGTCCCTGGTTGTGACAAGGTTACTGGAAAGGCTCTCATTTTGGATGAGATCATCAACTATGTACAGTCGTTGCAGAACCAAGTTGAGTTCCTATCCATGAGGATTGCTTCAATGAGCCCAGTGTTGTATGGCTTTGGAATGGACAGCGATGGCCTCCATGACCAAAAGATTGGAGGCATGTTCCAAGAAGCCCTTGCAATGCCTAATCCAGTACTGAACCAATCAAGCCCAGCTCCATCTCAAGCTATCATGGACACAACCTCAACCACATCCTACTCACTGCAAAGCCAGCATGGAGCCATCTCTTTCTCTCAGGACAATGGCAGTTACCTGATGCAAGCAGTGGGGGAGCCAAGGCAGCAGGAGATGCTCAATCAATTGGTGTTCAACAACATGTGCTCTTTCCAGTAG
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Protein seq | MADFSPHHSLLLKATAAGAAIATTNDPNISSFFLYNHSHGSQAPQPANAAAAAIVEDASLESSVSAVLDTSPSVDRKRKAAEDSAHSKDSCKDGKSRRGKKASKEVEEKSTTEDEPPKGYIHVRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASMSPVLYGFGMDSDGLHDQKIGGMFQEALAMPNPVLNQSSPAPSQAIMDTTSTTSYSLQSQHGAISFSQDNGSYLMQAVGEPRQQEMLNQLVFNNMCSFQ |
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Function | Transcription factor bHLH137 [UniProtKB/Swiss-Prot:Q93W88] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
LOC_Os08g42470 | LOC_Os08g42470.1 | Chr08 | 26841064 | 26843299 | - | MSU_osa1r7 | ||
CDS seq | ATGGCAGACTTCTCACCACACCACTCTCTCCTCCTCAAGGCTACTGCTGCTGGAGCAGCCATCGCCACCACCAATGACCCCAACATCTCAAGCTTCTTCCTCTACAACCACAGCCATGGCTCCCAAGCTCCACAACCTGCCAATGCAGCAGCAGCAGCCATTGTGGAGGATGCCTCATTGGAGAGCTCAGTGTCTGCAGTTCTTGACACCTCTCCATCTGTGGACAGGAAGAGGAAGGCAGCAGAAGACAGTGCACACTCCAAGGATAGCTGCAAGGATGGCAAGAGCAGGAGAGGGAAGAAGGCCAGCAAAGAAGTGGAGGAGAAGAGCACCACTGAAGATGAGCCTCCAAAAGGGTACATCCATGTGAGGGCAAGGAGAGGACAGGCAACTGATAGCCACAGCCTTGCAGAGAGGGTGAGGAGGGAGAGGATCAGTGAGAGGATGAGGATGCTGCAAGCACTGGTCCCTGGTTGTGACAAGGTTACTGGAAAGGCTCTCATTTTGGATGAGATCATCAACTATGTACAGTCGTTGCAGAACCAAGTTGAGTTCCTATCCATGAGGATTGCTTCAATGAGCCCAGTGTTGTATGGCTTTGGAATGGACAGCGATGGCCTCCATGACCAAAAGATTGGAGGCATGTTCCAAGAAGCCCTTGCAATGCCTAATCCAGTACTGAACCAATCAAGCCCAGCTCCATCTCAAGCTATCATGGACACAACCTCAACCACATCCTACTCACTGCAAAGCCAGCATGGAGCCATCTCTTTCTCTCAGGACAATGGCAGTTACCTGATGCAAGCAGTGGGGGAGCCAAGGCAGCAGGAGATGCTCAATCAATTGGTGTTCAACAACATGTGCTCTTTCCAGTAG
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Protein seq | MADFSPHHSLLLKATAAGAAIATTNDPNISSFFLYNHSHGSQAPQPANAAAAAIVEDASLESSVSAVLDTSPSVDRKRKAAEDSAHSKDSCKDGKSRRGKKASKEVEEKSTTEDEPPKGYIHVRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASMSPVLYGFGMDSDGLHDQKIGGMFQEALAMPNPVLNQSSPAPSQAIMDTTSTTSYSLQSQHGAISFSQDNGSYLMQAVGEPRQQEMLNQLVFNNMCSFQ
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0536800 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g33580 | RBH | 0.0 | 0.0 | 0.420431 |
Nipponbare | IRGSP 1.0 | RAP-db | Os08g0536800 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0023610 | RBH | 0.0 | 0.000000 | 0.921774 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0023460 | RBH | 0.0 | 0.0 | 0.000000 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0023400 | RBH | 0.0 | 0.0 | 0.000000 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0023750 | RBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0023330 | RBH | 0.0 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0425800 | RBH | 8.0191195 | 0.3027285 | 38.1408815 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0023220 | RBH | 0.0 | 0.0 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0445800 | RBH | 6.4304365 | 0.411206 | 72.4759525 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0022600 | RBH | 0.0 | 0.000000 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0022910 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0022730 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0023560 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0022890 | RBH | 0.000000 | 0.000000 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G023090 | RBH | 0.0 | 0.0 | 1.634263 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0023220 | RBH | 0.0 | 0.0 | 0.0 |