Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g35720 | OGI:09005370 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:22537611-22541313 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGAGGTGTTCCAATCACAGCCAATATATTTTGAAGAGTGACAATTATAAAGGGCACATCAGGAAATTTACCTACCGCACTGTTCGTGCCAGATGTGATCTTAGCCGCTTATACCTAATCGAACGGTGAGCCTATCCTCCTCTCCCACCTCCCCAAAACCTCGACAAATCGTGGCTCCGGCCGCCGGCGGCCGTACCCGCCTCCTCGAGAGGAAACACCCCCGACCCACATCCTTCGCTGCACAGAGCATGCAGCATCTGACGCGCCATCCCAACCATGGCCGCAGGCGACCAGGGCCATGTCCATCTCCGGCGGTTCAATTCTTCGAGTACTAACCATCTCCTTCGGGCACGGCGACTAAGGGCCTGTTTGGTTGCTACCCTGAGCAAATAAGCCTGGCCTAAGGTCATGCCTGTAACTCGCCTGGCATCTGTTTGGTTGCTACCCTGAGGATTCTAGCCTGATAAATCTTGCCTGAGTGTACTCGCCTGAGTCAGGCGTACAAAATGGGTGGCCTGAGCATTTCGCTCCACCTGCCTGAGTAAAATCACCGCTCTTCTATACAGTAGTGAAAACGAGACCACTTCTTCCTCCTCCTCACTGCTAGCCTAGGGTTCTTGCGGAGACCAGTTCCCATCGATTCTTCCATGGCTCCAGCAGCGGTGACCAAGGAACTTGCAGATCTGGTGGCCAGTTGTTTCTTTTTCCAGTAAAAGTCCTGCATTTGGTGATCTGTTAGAGCATAGCTCTGACCGTGAGAGCTAGCAGGTAAGTAGAAAAAGAAGAGTACTTTGTCCAGATCTGAAGGGAATCAAAATTTCTAACTCTCTCCTTTCCTCTGTGCGCGTCAGATTGCCAAGCCCCCACAATCTTTGCCACGATTTTCTGCAGCAAGGTGAGAACACAATCGCAGTTTTTTTTTTACTTTTCCCCTCTCTTGCTGCTTTGTTATTCAAGGATCCGTAGAGAGTATGCCTATTAGAAGTAAAACTATGTCAAAATGTGTGCTTTTTTTCACTAGTTTCTTTTTTTTTCCTTTGTCGTGTGATGCTCAGATGGATCTAGATTCTACTCATCAGTATATTGTCCATCAACGAACTAGAACTTTGGGTGTTTTAGCTGTTGTGTTGGCAATTATTCACTGGCGATGTCGTATAAGAAATAGACGACATCCAAGGAAGTATGGTCCATTGGTGGATAGAGATTTGGTCAGGAAAACAAGATTAGATGATTTGTACAATGGGAGTGATACAACTTGCATCAGTCAGCTTCGGATGAGGAAAGAAGTGTTCTGGAAACTTGCCTCCAAATTACGTGATAATGGCCTACTATGTGACACAATCCATGTCTCAGTGGAAGAACAATTAGCTATGTTCCTGCACACAGTTGGCCACAATTTAAGAAATCGTGTGATTGGATTCTATGTCATAAGATCCAGTGAGACAGTGAGCCGGTACTTCAATGAGGTGTTGAAAGCTTTATGTTGTCTTGCTAAAGATATGATACAAATTAGGTCAATAGAGACCCATTCAAAGATAGTTAGTAATCCTGGTAGATTCTACCCATATTTTGAGGTATCTCACGTGAAATATACTTATTCAACATTCTAATTAATGTAACCACTTTATGTTTGTATAGTAATAATTTCTTCTAACTTAGGATTGCATCGGGGCATTGGATGGCACACACATCCCTGCATTTGTCCCAGAGAATATAGTTAACAGGTTTAGAGGTCGCAAGTCCTATCCAACTCAGAATGTTCTTGCTGCGGTTGACTTTGATTTGAGGTTTACCTATGTTCTTGTTGGATGGGAGGGTTCCGCACATGACTCAGTGGTTCTCAAGGCTGCTCTTAGAAGATCAAGTGGAATTCAAATACCTGAAGGTGTGCATGAAGCTTTAGTATTTTCAGGTGCACAATATTTTGTGACAAGGCAATAAAACCATTCATCTTCTGTTGTAGGCAAATACTATTTAGCTGATGCAGGGTATGCAGCAAGACCTGGTATACTACCACCATTTAGGGGTGTTCGATACCACCTGAAAGAGTACGAAGGCGGGAAATCACCAGAAACACCTCAAGAATTATTCAATCTTCGACATTCCTCCCTTCGCACATCTGTTGAGAGAGCATTTGGAACCTTAAAAAACCGTTTCAAAGTTCTTGCTAGCAAGCCTTTCTTTCCATATAAAGTCCAAGTGAAGATAGTAATAGCGTGTTGTGTACTGCATAATTGGATCCTTGATAATGGTCCTGATAACATCATATATGATGAAGCTCGTTGGTATAGTAAGCTACCTAGATCAGCTAGAGTAGCGACAGATTATGGCGAGGAGCACCAACAGTGGATAGAATTTCGAGAAAATCTAGCTAATATTATGTGGGAGGAACATTAACAGTGGTGTTGTATGGCATGGATATTGTTCTATGACTGTTAGCTATTTCTAATGAATTCTTCTTTCAGCTCTTCATATTATAGCATTTTCTACTTTATGTTTTTTTGTTGGATGCCATTATTACCTACTGTGCATTGCTTTGTAGTTCATAACATGGATATAGGAGGAAGCAACAAACATGGCAAGGGAAAAAGTAAGGCACGCAAAGGAGTTGGGGGATCAGGTGTGAGGTCAAAACCCATAAATTGGCCACCAGCATTCTCTGAATTTCTTCTTGACTGTTACATTGAAAAGAAGTTAGAGTTGCCACCAAAGGGAGTGATCAAGAAGATGCATCACACTGCTTGCACATCAGCTATTAATGCAAAGTATGGCAGTACTTACAATGTTGATCAGGTTCAACGACACTATAGGCACCATAAAGAGACTTGGGCACTTGTAGCTCGCCATCTAAATGAGAGTAGTGGTGGCTGGGATGAGACAAACAAAATGTTGTCTCTCTCCCAATCTACCTTGGATAGCCTATCGGTAATCTCTTGTTGTTTTGAATACATGATATATTTGTTAAATAGATTTTCTATTATTGATGACTTTTTCTTGGCAGATTAATGACCGTGGAATTCTTTCAAAGCCTATTCAGTTCTTCGATAAGCTGCAAGAGTTGTTTAGTGGTTCCTCGGCTGATGGAGCGTTTATGGAAGATCCTTCAAGTGTTGCTGATTTTGATGATGAAGCTGATGAACTTGATACTTTCAATGATATGTCAACCTATGCTGAAACAAAATATCCACAAGGGGAAGACTCGGACAAATTAGAGGCAGACAGTGATGATTGCAAGGAGGTGGCAGCCCTTAATGCAGCAACTGCAGCCCTTAATGCAGCAACTAGTCAAGTTTCATCTTCTCATACCAGTGGTCTGAAGCCAAACAAGAAGAGTTTCAAAAAGTGTGGGAAGCCAAAGACCTTGCCTCAATCACATAATGATAAGGGTAAGCTTAAGGCAAAGTCATCATCTGGATTGCATGATGATGATGATATTGATGTGCTGATCACTAGTACCTTGGTTGGAATCAAAGATAACCTTGCCAAACCAATACAGACTGCAGCCCCTCAAGATCCAAATGCCCCTCTATGGGACATGCTCAAGAAGATTGCCTTAGAACCTGAAGATAAGATGAGAGTTGGACTACACCTTTGCAAGCCAGAATTTCAAGCTCATCGCAGTTTTCTTATTAGCATGGGTCAAGAATATCTTGAACGTTGGGTTTACAAGTTCTTATCTGGTGATGATACAGGCCTCTAG
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| CDS seq | ATGGAGAGGTGTTCCAATCACAGCCAATATATTTTGAAGAGTGACAATTATAAAGGGCACATCAGGAAATTTACCTACCGCACTGTTCGTGCCAGATGTGATCTTAGCCGCTTATACCTAATCGAACGTAAAAGTCCTGCATTTGGTGATCTGTTAGAGCATAGCTCTGACCATTGCCAAGCCCCCACAATCTTTGCCACGATTTTCTGCAGCAAGATGGATCTAGATTCTACTCATCAGTATATTGTCCATCAACGAACTAGAACTTTGGGTGTTTTAGCTGTTGTGTTGGCAATTATTCACTGGCGATGTCGTATAAGAAATAGACGACATCCAAGGAAGTATGGTCCATTGGTGGATAGAGATTTGGTCAGGAAAACAAGATTAGATGATTTGTACAATGGGAGTGATACAACTTGCATCAGTCAGCTTCGGATGAGGAAAGAAGTGTTCTGGAAACTTGCCTCCAAATTACGTGATAATGGCCTACTATGTGACACAATCCATGTCTCAGTGGAAGAACAATTAGCTATGTTCCTGCACACAGTTGGCCACAATTTAAGAAATCGTGTGATTGGATTCTATGTCATAAGATCCAGTGAGACAGTGAGCCGGTACTTCAATGAGGTGTTGAAAGCTTTATGTTGTCTTGCTAAAGATATGATACAAATTAGGTCAATAGAGACCCATTCAAAGATAGTTAGTAATCCTGGTAGATTCTACCCATATTTTGAGGATTGCATCGGGGCATTGGATGGCACACACATCCCTGCATTTGTCCCAGAGAATATAGTTAACAGGTTTAGAGGTCGCAAGTCCTATCCAACTCAGAATGTTCTTGCTGCGGTTGACTTTGATTTGAGGTTTACCTATGTTCTTGTTGGATGGGAGGGTTCCGCACATGACTCAGTGGTTCTCAAGGCTGCTCTTAGAAGATCAAGTGGAATTCAAATACCTGAAGGCAAATACTATTTAGCTGATGCAGGGTATGCAGCAAGACCTGGTATACTACCACCATTTAGGGGTGTTCGATACCACCTGAAAGAGTACGAAGGCGGGAAATCACCAGAAACACCTCAAGAATTATTCAATCTTCGACATTCCTCCCTTCGCACATCTGTTGAGAGAGCATTTGGAACCTTAAAAAACCGTTTCAAAGTTCTTGCTAGCAAGCCTTTCTTTCCATATAAAGTCCAAGTGAAGATAGTAATAGCGTGTTGTGTACTGCATAATTGGATCCTTGATAATGGTCCTGATAACATCATATATGATGAAGCTCGTTGGTATATTCATAACATGGATATAGGAGGAAGCAACAAACATGGCAAGGGAAAAAGTAAGGCACGCAAAGGAGTTGGGGGATCAGGTGTGAGGTCAAAACCCATAAATTGGCCACCAGCATTCTCTGAATTTCTTCTTGACTGTTACATTGAAAAGAAGTTAGAGTTGCCACCAAAGGGAGTGATCAAGAAGATGCATCACACTGCTTGCACATCAGCTATTAATGCAAAGTATGGCAGTACTTACAATGTTGATCAGATTAATGACCGTGGAATTCTTTCAAAGCCTATTCAGTTCTTCGATAAGCTGCAAGAGTTGTTTAGTGGTTCCTCGGCTGATGGAGCGTTTATGGAAGATCCTTCAAGTGTTGCTGATTTTGATGATGAAGCTGATGAACTTGATACTTTCAATGATATGTCAACCTATGCTGAAACAAAATATCCACAAGGGGAAGACTCGGACAAATTAGAGGCAGACAGTGATGATTGCAAGGAGGTGGCAGCCCTTAATGCAGCAACTGCAGCCCTTAATGCAGCAACTAGTCAAGTTTCATCTTCTCATACCAGTGGTCTGAAGCCAAACAAGAAGAGTTTCAAAAAGTGTGGGAAGCCAAAGACCTTGCCTCAATCACATAATGATAAGGGTAAGCTTAAGGCAAAGTCATCATCTGGATTGCATGATGATGATGATATTGATGTGCTGATCACTAGTACCTTGGTTGGAATCAAAGATAACCTTGCCAAACCAATACAGACTGCAGCCCCTCAAGATCCAAATGCCCCTCTATGGGACATGCTCAAGAAGATTGCCTTAGAACCTGAAGATAAGATGAGAGTTGGACTACACCTTTGCAAGCCAGAATTTCAAGCTCATCGCAGTTTTCTTATTAGCATGGGTCAAGAATATCTTGAACGTTGGGTTTACAAGTTCTTATCTGGTGATGATACAGGCCTCTAG
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| Protein seq | MERCSNHSQYILKSDNYKGHIRKFTYRTVRARCDLSRLYLIERKSPAFGDLLEHSSDHCQAPTIFATIFCSKMDLDSTHQYIVHQRTRTLGVLAVVLAIIHWRCRIRNRRHPRKYGPLVDRDLVRKTRLDDLYNGSDTTCISQLRMRKEVFWKLASKLRDNGLLCDTIHVSVEEQLAMFLHTVGHNLRNRVIGFYVIRSSETVSRYFNEVLKALCCLAKDMIQIRSIETHSKIVSNPGRFYPYFEDCIGALDGTHIPAFVPENIVNRFRGRKSYPTQNVLAAVDFDLRFTYVLVGWEGSAHDSVVLKAALRRSSGIQIPEGKYYLADAGYAARPGILPPFRGVRYHLKEYEGGKSPETPQELFNLRHSSLRTSVERAFGTLKNRFKVLASKPFFPYKVQVKIVIACCVLHNWILDNGPDNIIYDEARWYIHNMDIGGSNKHGKGKSKARKGVGGSGVRSKPINWPPAFSEFLLDCYIEKKLELPPKGVIKKMHHTACTSAINAKYGSTYNVDQINDRGILSKPIQFFDKLQELFSGSSADGAFMEDPSSVADFDDEADELDTFNDMSTYAETKYPQGEDSDKLEADSDDCKEVAALNAATAALNAATSQVSSSHTSGLKPNKKSFKKCGKPKTLPQSHNDKGKLKAKSSSGLHDDDDIDVLITSTLVGIKDNLAKPIQTAAPQDPNAPLWDMLKKIALEPEDKMRVGLHLCKPEFQAHRSFLISMGQEYLERWVYKFLSGDDTGL |
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| Function | Protein ALP1-like [UniProtKB/Swiss-Prot:Q9M2U3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g35720 | LOC_Os08g35720.1 | Chr08 | 22537611 | 22541313 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGAGGTGTTCCAATCACAGCCAATATATTTTGAAGAGTGACAATTATAAAGGGCACATCAGGAAATTTACCTACCGCACTGTTCGTGCCAGATGTGATCTTAGCCGCTTATACCTAATCGAACGTAAAAGTCCTGCATTTGGTGATCTGTTAGAGCATAGCTCTGACCATTGCCAAGCCCCCACAATCTTTGCCACGATTTTCTGCAGCAAGATGGATCTAGATTCTACTCATCAGTATATTGTCCATCAACGAACTAGAACTTTGGGTGTTTTAGCTGTTGTGTTGGCAATTATTCACTGGCGATGTCGTATAAGAAATAGACGACATCCAAGGAAGTATGGTCCATTGGTGGATAGAGATTTGGTCAGGAAAACAAGATTAGATGATTTGTACAATGGGAGTGATACAACTTGCATCAGTCAGCTTCGGATGAGGAAAGAAGTGTTCTGGAAACTTGCCTCCAAATTACGTGATAATGGCCTACTATGTGACACAATCCATGTCTCAGTGGAAGAACAATTAGCTATGTTCCTGCACACAGTTGGCCACAATTTAAGAAATCGTGTGATTGGATTCTATGTCATAAGATCCAGTGAGACAGTGAGCCGGTACTTCAATGAGGTGTTGAAAGCTTTATGTTGTCTTGCTAAAGATATGATACAAATTAGGTCAATAGAGACCCATTCAAAGATAGTTAGTAATCCTGGTAGATTCTACCCATATTTTGAGGATTGCATCGGGGCATTGGATGGCACACACATCCCTGCATTTGTCCCAGAGAATATAGTTAACAGGTTTAGAGGTCGCAAGTCCTATCCAACTCAGAATGTTCTTGCTGCGGTTGACTTTGATTTGAGGTTTACCTATGTTCTTGTTGGATGGGAGGGTTCCGCACATGACTCAGTGGTTCTCAAGGCTGCTCTTAGAAGATCAAGTGGAATTCAAATACCTGAAGGCAAATACTATTTAGCTGATGCAGGGTATGCAGCAAGACCTGGTATACTACCACCATTTAGGGGTGTTCGATACCACCTGAAAGAGTACGAAGGCGGGAAATCACCAGAAACACCTCAAGAATTATTCAATCTTCGACATTCCTCCCTTCGCACATCTGTTGAGAGAGCATTTGGAACCTTAAAAAACCGTTTCAAAGTTCTTGCTAGCAAGCCTTTCTTTCCATATAAAGTCCAAGTGAAGATAGTAATAGCGTGTTGTGTACTGCATAATTGGATCCTTGATAATGGTCCTGATAACATCATATATGATGAAGCTCGTTGGTATATTCATAACATGGATATAGGAGGAAGCAACAAACATGGCAAGGGAAAAAGTAAGGCACGCAAAGGAGTTGGGGGATCAGGTGTGAGGTCAAAACCCATAAATTGGCCACCAGCATTCTCTGAATTTCTTCTTGACTGTTACATTGAAAAGAAGTTAGAGTTGCCACCAAAGGGAGTGATCAAGAAGATGCATCACACTGCTTGCACATCAGCTATTAATGCAAAGTATGGCAGTACTTACAATGTTGATCAGATTAATGACCGTGGAATTCTTTCAAAGCCTATTCAGTTCTTCGATAAGCTGCAAGAGTTGTTTAGTGGTTCCTCGGCTGATGGAGCGTTTATGGAAGATCCTTCAAGTGTTGCTGATTTTGATGATGAAGCTGATGAACTTGATACTTTCAATGATATGTCAACCTATGCTGAAACAAAATATCCACAAGGGGAAGACTCGGACAAATTAGAGGCAGACAGTGATGATTGCAAGGAGGTGGCAGCCCTTAATGCAGCAACTGCAGCCCTTAATGCAGCAACTAGTCAAGTTTCATCTTCTCATACCAGTGGTCTGAAGCCAAACAAGAAGAGTTTCAAAAAGTGTGGGAAGCCAAAGACCTTGCCTCAATCACATAATGATAAGGGTAAGCTTAAGGCAAAGTCATCATCTGGATTGCATGATGATGATGATATTGATGTGCTGATCACTAGTACCTTGGTTGGAATCAAAGATAACCTTGCCAAACCAATACAGACTGCAGCCCCTCAAGATCCAAATGCCCCTCTATGGGACATGCTCAAGAAGATTGCCTTAGAACCTGAAGATAAGATGAGAGTTGGACTACACCTTTGCAAGCCAGAATTTCAAGCTCATCGCAGTTTTCTTATTAGCATGGGTCAAGAATATCTTGAACGTTGGGTTTACAAGTTCTTATCTGGTGATGATACAGGCCTCTAG
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| Protein seq | MERCSNHSQYILKSDNYKGHIRKFTYRTVRARCDLSRLYLIERKSPAFGDLLEHSSDHCQAPTIFATIFCSKMDLDSTHQYIVHQRTRTLGVLAVVLAIIHWRCRIRNRRHPRKYGPLVDRDLVRKTRLDDLYNGSDTTCISQLRMRKEVFWKLASKLRDNGLLCDTIHVSVEEQLAMFLHTVGHNLRNRVIGFYVIRSSETVSRYFNEVLKALCCLAKDMIQIRSIETHSKIVSNPGRFYPYFEDCIGALDGTHIPAFVPENIVNRFRGRKSYPTQNVLAAVDFDLRFTYVLVGWEGSAHDSVVLKAALRRSSGIQIPEGKYYLADAGYAARPGILPPFRGVRYHLKEYEGGKSPETPQELFNLRHSSLRTSVERAFGTLKNRFKVLASKPFFPYKVQVKIVIACCVLHNWILDNGPDNIIYDEARWYIHNMDIGGSNKHGKGKSKARKGVGGSGVRSKPINWPPAFSEFLLDCYIEKKLELPPKGVIKKMHHTACTSAINAKYGSTYNVDQINDRGILSKPIQFFDKLQELFSGSSADGAFMEDPSSVADFDDEADELDTFNDMSTYAETKYPQGEDSDKLEADSDDCKEVAALNAATAALNAATSQVSSSHTSGLKPNKKSFKKCGKPKTLPQSHNDKGKLKAKSSSGLHDDDDIDVLITSTLVGIKDNLAKPIQTAAPQDPNAPLWDMLKKIALEPEDKMRVGLHLCKPEFQAHRSFLISMGQEYLERWVYKFLSGDDTGL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0248900 | SBH | 0.0 | 0.0 | 0.193475 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g07440 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0248900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0018530 | RBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0018420 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0018350 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0011810 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0010750 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0395600 | SBH | 0 | 0.0757095 | 0.0137425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0010780 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0415600 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0003920 | SBH | 0.059174 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0013560 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0010360 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0046350 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011390 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011570 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0007400 | SBH | 0.0 | 0.0 | 0.0 |
