Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g30260 | OGI:01022060 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:18598676-18601822 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCATGGCACAGGGCCGGTGTCCTGCTGCTAGGGGCTCAGTCCTGCCTACCTGTCCCGGGGGTTCCGGCCGTAGGTGGGGTTGGGTCGGTACTCTTGTCTATGGCTAGGATGGGTTGGAAACTATGTCACGTCTTCTGTCCGTATACCGTGGTGGTATGTGGCACGTGGTTACACGTGAGGAGGATGTGTCTTGTGGGTAAAGATGTACACCTCTGATCAGAGTATAATCTATTCGAATAGCCGCGCCCTCGGTTATGGGCAAGCCGAGCAATGTACCCAAGTTAGTGTTTTAATTCTTAAAACCTGCTTAACAACTAAAATGTGGAATGGTTGGCCTGGGTTGGCTTGGGACGAGCTGGGACCCAGGGTCGGGTTGCCAGTTCGGTCTGAATCATCGTAGGCCTTGGGTTAAGGCAGGTTCGTGTGGGTTCACGGCCTTGATTAATAATATTGTATAGCTCTGGAATCGTGTTTACAAAATAGCTTTGAGCAACTAAGTGTCTTTTAATGCTGTTTACTGCAAACCCTAACCCTTTATATTATAACCCCCTTGTACTCCCTTACATTTATCCTGCACTTGTGGGTGTGTCTTGTTGAGTACGGTGGTTGTACTCTGTCTTGCTCAATTTTTTCCCAAACCCAGAAGAGGAGCCTGCCGTCAAGCGCCTGTGGTCGTCGCCCTAGTCTTCCGCTGTTTCCCGTTTGTCTTTGTGTGTGCTGGGCCTTCGCCGCCCATGTAATAAATTAACTATTTATGCTTCCGCTTGATAAACTCTGAAATGTATCAACTTTTGGTGTACCTTGCCTCCTGGGACAAGAAATAATACACGCACGTAAGGAACGCCCGTTGGGTTAATTCCGGTCGTGACACATTATTACAAATTTACTATGTTATCTATTCTTTAATGACTACATTTGCTTGCAAAATAACCCTTGTTTTTACTAGTTAAGTACTATGTCAAGACGCCATCGACATTATCCGGATCCTGAAGTTGAAGACCATTTTGAGGATTCAACACAAGATGAACCTTCAGATTCTTTGGTTACTTCAACAAAAGAAAGTAAGGGTGGTCGTGGTCCAAATGTTTTGATGGCACCAGTTCCAGAGAAAGATAGGGCAGTGATAACTCCACTCAATAAAGAGTAAGTTGACACTCTAAATTTCTGCTTATATTAAAACACACACTGTCTATCACACACACAAACACACACTCCATATAATATGTATATCATTGTTGTTAATAATTGAAAATCTTGTTGTAAACTCCATGTTAAATTTTAAGAAATACAGATGCATAGTTCCTATAAATCCAATATTATGATGGCTGAACATATTTTTTTGTCACTTTCATTGTTTTACACTAATATTACCTAACTTGGTAAATGGTATGTTGTTTCTAGTGCTTGGATTACGAATCCTATGAAGAAGAATGTTTCATCTACCATCACATGTCTTATAAAAGCTCACTACCCTGGCACATATAGACCTTTGGATAAACATGGCAAACAGGTGCCTGAGGATGAAGCAGTTGTCATTGCTCATTATCACAACTTTCCTGCTCATACAAGGATAACTATTCTGAAGGAATTTTTGGTGAGTTACAGTGTTAGCATTCACATAGAATATTTAGGTTCTTTTAATGGATTGACGTCCTACCTTATCCTTTTACAGCTGCGTTTTAAGTTTGCTGATGGTAGAGAAGTGGATTGTGCTAGATTATTTTATCGCAAAGCTGTTGAACGTTTTAGCCAAGCTTTGTCACATGAGAAATCTGAAGCAAAACGTTCTTTGGAAAAGCATATCGAAAATATGCGTGCGACTGAGTTACAACAGGATGGAGATGCCCCTTCTCATGATGATTTTGATGTTGATGATCCTCAACTTTGGAAGGCATTCCCTCCTTATTGGATTGAGCAAAAGTGGTGGGATATGTTGTGTGACTTGTGGTCTGATGAAAATGTAAAGAAAGTGTCAGCTCAAAACAGCAAAAATCGGATGGAAGGAGGTGGTGTTCATCATACTTGTGGTTCACGAAGTGTTGCTATGCATAAACAAGCCATGGTACCAAAGTTAAATGATTTTCCTATTATGATTTATACTACTTTGACTTCTCACTATGATATGTACTTTTGGATAGATAATTGAGAATGCAGGGACGGATGTTGATGATATTGATGTCTTTGAACGCACACATCGACATGCAAAGGGCAAGGGACAGTATGCCAACAAGAAAGCTGAACAGTTAGCGGTATGTGTTCTGCTTATTCTAGTTTCTAGTTTCAAGTTTGGCAATCAAAAAAAGTGAAATCATCTAAAACCATGCAATGGTGCCACTACATATCTTAATTAGGTGGTGTATAATGATCGTGTCAAGGAAGGAGAAAACAATCAAGTCGACAAACAACATGTTTGGGTGCAGCTCACTAAAGGTAGAAAACGTGGAAGGTATTATGGTCTTCCAGGAATTATAGATAGAAACCATGTTGGTAATTCAGCAAGTGCACCATCTGGTAGCATGGAGACACAGCCACTATATACACAGCAGCAAGTGCAAGACATTGTTCAGCAGGCAGTCACTAATGCTGTGAACAATGCTCATCAATAACTAGCATCAAGGATAGAAAGGCTAGAGCAGACAGTGGATAAGGATAAGGCAGAAACTCATTCCCATGTAAGTATAAATTAAAGCTATTTTTGTTACCTAGAAAGAACATACTAACTGGTATTATTTTTCAAATCACAGGATGCAAATGGACCATCTTCTTCTGTTGTCCCTGAGTTCCTTCATGCACTTCTCATGGTATATACTGACTTCAATCTTTTTACTACTGTACATCCTTATTATTTATTCTCTTGAACAAACATTATGAAAAATTTGGTTCTTGGACAACAATAGATCAATTTAAAAATGTTCTGCCAATGGTATGGCTTTAGTTGCGATACTAGTTAGTGAGTTCAATTTAGAAATGGACTGCTATGTATCATTCATAAGTTCAAACTTAGACCTACCCTTATAGTTTTTCAGTAACTTTGTAGCTTATTCTGTAATTTTATTTCAGAATGGGATGAACACTACTGAAGAGGCGCCACAAGCTGGTCATTGTGGAAGAACTTGTGAGAATGATGACCTCTGGCGTTTCTAG
More
|
||||||||||
| CDS seq | ATGTCATGGCACAGGGCCGGTGTCCTGCTGCTAGGGGCTCAGTCCTGCCTACCTGTCCCGGGGGTTCCGGCCGTAGGTGGGGTTGGGTCGGTACTCTTGTCTATGGCTAGGATGGGTTGGAAACTATGTCACGTCTTCTGTCCGTATACCGTGGTGTTAAGTACTATGTCAAGACGCCATCGACATTATCCGGATCCTGAAGTTGAAGACCATTTTGAGGATTCAACACAAGATGAACCTTCAGATTCTTTGGTTACTTCAACAAAAGAAAGTAAGGGTGGTCGTGGTCCAAATGTTTTGATGGCACCAGTTCCAGAGAAAGATAGGGCAGTGATAACTCCACTCAATAAAGATGCTTGGATTACGAATCCTATGAAGAAGAATGTTTCATCTACCATCACATGTCTTATAAAAGCTCACTACCCTGGCACATATAGACCTTTGGATAAACATGGCAAACAGGTGCCTGAGGATGAAGCAGTTGTCATTGCTCATTATCACAACTTTCCTGCTCATACAAGGATAACTATTCTGAAGGAATTTTTGCTGCGTTTTAAGTTTGCTGATGGTAGAGAAGTGGATTGTGCTAGATTATTTTATCGCAAAGCTGTTGAACGTTTTAGCCAAGCTTTGTCACATGAGAAATCTGAAGCAAAACGTTCTTTGGAAAAGCATATCGAAAATATGCGTGCGACTGAGTTACAACAGGATGGAGATGCCCCTTCTCATGATGATTTTGATGTTGATGATCCTCAACTTTGGAAGGCATTCCCTCCTTATTGGATTGAGCAAAAGTGGTGGGATATGTTGTGTGACTTGTGGTCTGATGAAAATGTAAAGAAAGTGTCAGCTCAAAACAGCAAAAATCGGATGGAAGGAGGTGGTGTTCATCATACTTGTGGTTCACGAAGTGTTGCTATGCATAAACAAGCCATGATAATTGAGAATGCAGGGACGGATGTTGATGATATTGATGTCTTTGAACGCACACATCGACATGCAAAGGGCAAGGGACAGTATGCCAACAAGAAAGCTGAACAGTTAGCGGTGGTGTATAATGATCGTGTCAAGGAAGGAGAAAACAATCAAGTCGACAAACAACATGTTTGGGTGCAGCTCACTAAAGCATCAAGGATAGAAAGGCTAGAGCAGACAGTGGATAAGGATAAGGCAGAAACTCATTCCCATGATGCAAATGGACCATCTTCTTCTGTTGTCCCTGAGTTCCTTCATGCACTTCTCATGAATGGGATGAACACTACTGAAGAGGCGCCACAAGCTGGTCATTGTGGAAGAACTTGTGAGAATGATGACCTCTGGCGTTTCTAG
More
|
||||||||||
| Protein seq | MSWHRAGVLLLGAQSCLPVPGVPAVGGVGSVLLSMARMGWKLCHVFCPYTVVLSTMSRRHRHYPDPEVEDHFEDSTQDEPSDSLVTSTKESKGGRGPNVLMAPVPEKDRAVITPLNKDAWITNPMKKNVSSTITCLIKAHYPGTYRPLDKHGKQVPEDEAVVIAHYHNFPAHTRITILKEFLLRFKFADGREVDCARLFYRKAVERFSQALSHEKSEAKRSLEKHIENMRATELQQDGDAPSHDDFDVDDPQLWKAFPPYWIEQKWWDMLCDLWSDENVKKVSAQNSKNRMEGGGVHHTCGSRSVAMHKQAMIIENAGTDVDDIDVFERTHRHAKGKGQYANKKAEQLAVVYNDRVKEGENNQVDKQHVWVQLTKASRIERLEQTVDKDKAETHSHDANGPSSSVVPEFLHALLMNGMNTTEEAPQAGHCGRTCENDDLWRF |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g30260 | LOC_Os08g30260.1 | Chr08 | 18598676 | 18601822 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCATGGCACAGGGCCGGTGTCCTGCTGCTAGGGGCTCAGTCCTGCCTACCTGTCCCGGGGGTTCCGGCCGTAGGTGGGGTTGGGTCGGTACTCTTGTCTATGGCTAGGATGGGTTGGAAACTATGTCACGTCTTCTGTCCGTATACCGTGGTGTTAAGTACTATGTCAAGACGCCATCGACATTATCCGGATCCTGAAGTTGAAGACCATTTTGAGGATTCAACACAAGATGAACCTTCAGATTCTTTGGTTACTTCAACAAAAGAAAGTAAGGGTGGTCGTGGTCCAAATGTTTTGATGGCACCAGTTCCAGAGAAAGATAGGGCAGTGATAACTCCACTCAATAAAGATGCTTGGATTACGAATCCTATGAAGAAGAATGTTTCATCTACCATCACATGTCTTATAAAAGCTCACTACCCTGGCACATATAGACCTTTGGATAAACATGGCAAACAGGTGCCTGAGGATGAAGCAGTTGTCATTGCTCATTATCACAACTTTCCTGCTCATACAAGGATAACTATTCTGAAGGAATTTTTGCTGCGTTTTAAGTTTGCTGATGGTAGAGAAGTGGATTGTGCTAGATTATTTTATCGCAAAGCTGTTGAACGTTTTAGCCAAGCTTTGTCACATGAGAAATCTGAAGCAAAACGTTCTTTGGAAAAGCATATCGAAAATATGCGTGCGACTGAGTTACAACAGGATGGAGATGCCCCTTCTCATGATGATTTTGATGTTGATGATCCTCAACTTTGGAAGGCATTCCCTCCTTATTGGATTGAGCAAAAGTGGTGGGATATGTTGTGTGACTTGTGGTCTGATGAAAATGTAAAGAAAGTGTCAGCTCAAAACAGCAAAAATCGGATGGAAGGAGGTGGTGTTCATCATACTTGTGGTTCACGAAGTGTTGCTATGCATAAACAAGCCATGATAATTGAGAATGCAGGGACGGATGTTGATGATATTGATGTCTTTGAACGCACACATCGACATGCAAAGGGCAAGGGACAGTATGCCAACAAGAAAGCTGAACAGTTAGCGGTGGTGTATAATGATCGTGTCAAGGAAGGAGAAAACAATCAAGTCGACAAACAACATGTTTGGGTGCAGCTCACTAAAGCATCAAGGATAGAAAGGCTAGAGCAGACAGTGGATAAGGATAAGGCAGAAACTCATTCCCATGATGCAAATGGACCATCTTCTTCTGTTGTCCCTGAGTTCCTTCATGCACTTCTCATGAATGGGATGAACACTACTGAAGAGGCGCCACAAGCTGGTCATTGTGGAAGAACTTGTGAGAATGATGACCTCTGGCGTTTCTAG
More
|
|||||||
| Protein seq | MSWHRAGVLLLGAQSCLPVPGVPAVGGVGSVLLSMARMGWKLCHVFCPYTVVLSTMSRRHRHYPDPEVEDHFEDSTQDEPSDSLVTSTKESKGGRGPNVLMAPVPEKDRAVITPLNKDAWITNPMKKNVSSTITCLIKAHYPGTYRPLDKHGKQVPEDEAVVIAHYHNFPAHTRITILKEFLLRFKFADGREVDCARLFYRKAVERFSQALSHEKSEAKRSLEKHIENMRATELQQDGDAPSHDDFDVDDPQLWKAFPPYWIEQKWWDMLCDLWSDENVKKVSAQNSKNRMEGGGVHHTCGSRSVAMHKQAMIIENAGTDVDDIDVFERTHRHAKGKGQYANKKAEQLAVVYNDRVKEGENNQVDKQHVWVQLTKASRIERLEQTVDKDKAETHSHDANGPSSSVVPEFLHALLMNGMNTTEEAPQAGHCGRTCENDDLWRF
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0392500 | RBH | 0.000000 | 0.0 | 0.324302 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g09320 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0392500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0014750 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0007140 | SBH | 0.0 | 0.0 | 0.905333 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0006790 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0010690 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0402200 | SBH | 0.271272 | 3.2516455 | 0.3263845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0010900 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0317400 | RBH | 0 | 0 | 0.298007 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0013440 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0032080 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0013320 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0031860 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G014530 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0014650 | RBH | 0.0 | 0.0 | 0.0 |
