Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g28430 | OGI:08050810 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:17351604-17352078 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACCTAATTTCTACGATTATCAGAGCGAACTGGGCAAAGAAGACAAATTCAAGCCCCTGAAAGAGAGTAGGAGAAAGAACGTATACTTATAATAATTATACACACATATATATGTACCTCGGTGGGACGCAAAGATTGGTGACTGAATGTGAAGGTGGAGTCCACAAACGCATCCAGCAATAGACTGGAAGCCATGGTTACTGCCGCAGATGCCTCCCCAAGTTTGGTGGTAAGCTGCTGCTGAAACTCCTTGAAATGTGGCTGCAAGTATATATATCGACAACGCAATTAAAATAGGATCAACATTAGAGGAGGGGAGGTCGTTCTTACATTGGATGTGATACATTTGGTGAAATGATCAGTCGCATTAGGCCTTGTGATTGATGGTCTTGGTGTTCCAGTAGTGCTGCTCCTTCTGCACAACCATGGTTGGAGAGTGCCGCCATACATGGATGGAGATGCTGCGGCCACCAT
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| CDS seq | ATGGTGGCCGCAGCATCTCCATCCATGTATGGCGGCACTCTCCAACCATGGTTGTGCAGAAGGAGCAGCACTACTGGAACACCAAGACCATCAATCACAAGGCCTAATGCGACTGATCATTTCACCAAATGTATCACATCCAATCCACATTTCAAGGAGTTTCAGCAGCAGCTTACCACCAAACTTGGGGAGGCATCTGCGGCAGTAACCATGGCTTCCAGTCTATTGCTGGATGCGTTTGTGGACTCCACCTTCACATTCAGTCACCAATCTTTGCGTCCCACCGAGGGGCTTGAATTTGTCTTCTTTGCCCAGTTCGCTCTGATAATCGTAGAAATTAGGTGA |
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| Protein seq | MVAAASPSMYGGTLQPWLCRRSSTTGTPRPSITRPNATDHFTKCITSNPHFKEFQQQLTTKLGEASAAVTMASSLLLDAFVDSTFTFSHQSLRPTEGLEFVFFAQFALIIVEIR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g28430 | LOC_Os08g28430.1 | Chr08 | 17351604 | 17352078 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTGGCCGCAGCATCTCCATCCATGTATGGCGGCACTCTCCAACCATGGTTGTGCAGAAGGAGCAGCACTACTGGAACACCAAGACCATCAATCACAAGGCCTAATGCGACTGATCATTTCACCAAATGTATCACATCCAATCCACATTTCAAGGAGTTTCAGCAGCAGCTTACCACCAAACTTGGGGAGGCATCTGCGGCAGTAACCATGGCTTCCAGTCTATTGCTGGATGCGTTTGTGGACTCCACCTTCACATTCAGTCACCAATCTTTGCGTCCCACCGAGGGGCTTGAATTTGTCTTCTTTGCCCAGTTCGCTCTGATAATCGTAGAAATTAGGTGA
More
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| Protein seq | MVAAASPSMYGGTLQPWLCRRSSTTGTPRPSITRPNATDHFTKCITSNPHFKEFQQQLTTKLGEASAAVTMASSLLLDAFVDSTFTFSHQSLRPTEGLEFVFFAQFALIIVEIR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0371608 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g28400 | SBH | 0.577604 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0371608 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013940 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0013840 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013810 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0014110 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0013800 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0272000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0013850 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0296200 | SBH | 1.559098 | 0.1948505 | 0.071804 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0013350 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0013410 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0013360 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0014150 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0013470 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G013540 | SBH | 0.000000 | 0.0 | 8.223528 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0013630 | SBH | 0.0 | 0.0 | 0.0 |
