Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g13850 | OGI:04041240 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:8269508-8269849 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTCGCCAACCTGCATGGCTGCGTGTGCGGTTCGGCGGCGGTGGCGTCGCCAGGGAGGAGGCGGGGCTCAAGATCCTGGCGTTCGAGGTGGCGGCGGCCATGTCGCGGCTCGTGTCGCTCTACTGCTCGTTGTCTGACGTGGAGATCAGGAGGCTCCGCGTGGACACGCTGCGCGCCGAGGGCGTTGCGCGCATCACGTCTACGGACCAGTCGCTCCTGCTCTGGCTCGCGTGTGGCGAGGTCGTGGCGGACCTCGACCGCGCCGCCGGCAGCGCTGCGCGGTTCGGGACGCGGTGCTGCACGGCGCGCCGTTCCTGCACGATTTTCGACCGTGTCTAG |
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| CDS seq | ATGGCTCGCCAACCTGCATGGCTGCGTGTGCGGTTCGGCGGCGGTGGCGTCGCCAGGGAGGAGGCGGGGCTCAAGATCCTGGCGTTCGAGGTGGCGGCGGCCATGTCGCGGCTCGTGTCGCTCTACTGCTCGTTGTCTGACGTGGAGATCAGGAGGCTCCGCGTGGACACGCTGCGCGCCGAGGGCGTTGCGCGCATCACGTCTACGGACCAGTCGCTCCTGCTCTGGCTCGCGTGTGGCGAGGTCGTGGCGGACCTCGACCGCGCCGCCGGCAGCGCTGCGCGGTTCGGGACGCGGTGCTGCACGGCGCGCCGTTCCTGCACGATTTTCGACCGTGTCTAG |
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| Protein seq | MARQPAWLRVRFGGGGVAREEAGLKILAFEVAAAMSRLVSLYCSLSDVEIRRLRVDTLRAEGVARITSTDQSLLLWLACGEVVADLDRAAGSAARFGTRCCTARRSCTIFDRV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g13850 | LOC_Os08g13850.1 | Chr08 | 8269508 | 8269849 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTCGCCAACCTGCATGGCTGCGTGTGCGGTTCGGCGGCGGTGGCGTCGCCAGGGAGGAGGCGGGGCTCAAGATCCTGGCGTTCGAGGTGGCGGCGGCCATGTCGCGGCTCGTGTCGCTCTACTGCTCGTTGTCTGACGTGGAGATCAGGAGGCTCCGCGTGGACACGCTGCGCGCCGAGGGCGTTGCGCGCATCACGTCTACGGACCAGTCGCTCCTGCTCTGGCTCGCGTGTGGCGAGGTCGTGGCGGACCTCGACCGCGCCGCCGGCAGCGCTGCGCGGTTCGGGACGCGGTGCTGCACGGCGCGCCGTTCCTGCACGATTTTCGACCGTGTCTAG
More
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| Protein seq | MARQPAWLRVRFGGGGVAREEAGLKILAFEVAAAMSRLVSLYCSLSDVEIRRLRVDTLRAEGVARITSTDQSLLLWLACGEVVADLDRAAGSAARFGTRCCTARRSCTIFDRV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g23840 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0007910 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007980 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0008060 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0008070 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0009040 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0329500 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0020390 | SBH | 0.144266 | 0.0 | 0.178989 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0341800 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0006520 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0008810 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0006830 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0013990 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0033730 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G013420 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0033840 | SBH | 0.0 | 0.0 | 0.0 |
