Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g12970 | OGI:08022100 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:7698287-7699299 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATTGAGGTGTTTGTCTAGGAAAAATCAGGTGTGTAGTTGTGACGTGCACGTTTGCCAAAGCCAATGTAGTTGCCACATTGTCCACATGAAGACTCTTGCCAAGGATGTGTTGGCAAATCAACTTGAGCCTGTCCATGGCATATCTATCCGCAGCCACAAGTAAATGCCGGATCATCTCAATCTTATCACCTCCCTGAAGGTTCACACACATGTGATTCTTTGATAACCAGAAGTAGACATTTTTTTTTTGAGAAACACAGTACGTACGCAGGCGCTTACAACGTGCGCACACTCACCCCTATGAACGCACACACGCACACTCTACCCCTATGAGCACCTCCGAAAGACTGAGCCGGCATGTCTTGAGATTGACGAAGTCACCACAGGCGCCTCGCTGTCAACGGGTACGTCGCCTACCACTGAAAGAATAATTAGCCGTAAATGCGAGCACCCGTGTCAAATCTAGGATTTGAACCCGGGTGGGCTGGTTCCACCACAAGGAACCTAACCAGTTGAGCTATGCTCACTTCGCAACCAGAAGTAGACATTTAATTGTGAGGCGATTGTCCTTGATGAAGCCTGATTCTGGCAGCTCAAGATCGCTTCTTAGCTTGAAATAGGCATGTGAAATGACAGTTCCAAACCGATTTTTACCCCTAGAGCTGAACACTACTGGCTGTTTGTTCAGGGTCAATTCCCAGTTGGACAAGCCAGGTACCTGATTAACCAATCTGAGGGAATACAATGCCCGGACCTCAGCATTGTCACTCATAAGCTCAAGATAGACTGAGATGTACTCTTTGTAAGCCTCACAAACTCCATCAGGATAGAAGCTGCCCAGTCGAAGCCACCGACAGTGAAGATGTTCGACCGGACAAACTTGCCAACACCGATGCCCTTCTGGAATCTGTACCCGTTGATCTCAAATATGTGCCCACCCACCTCTGACCCTGTGGTGCATCTTGATGCCGTCGTCTTGGCTTTGGTGATTGGCGTTAACCCTGAAAGCAT
More
|
||||||||||
| CDS seq | ATGCTTTCAGGGTTAACGCCAATCACCAAAGCCAAGACGACGGCATCAAGATGCACCACAGGGTCAGAGGTGGGTGGGCACATATTTGAGATCAACGGGTACAGATTCCAGAAGGGCATCGGTGTTGGCAAGTTTGTCCGGTCGAACATCTTCACTGTCGGTGGCTTCGACTGGGCAGCTTCTATCCTGATGGAGTTTGGAGGTGATAAGATTGAGATGATCCGGCATTTACTTGTGGCTGCGGATAGATATGCCATGGACAGGCTCAAGTTGATTTGCCAACACATCCTTGGCAAGAGTCTTCATGTGGACAATGTGGCAACTACATTGGCTTTGGCAAACGTGCACGTCACAACTACACACCTGATTTTTCCTAGACAAACACCTCAATAG |
||||||||||
| Protein seq | MLSGLTPITKAKTTASRCTTGSEVGGHIFEINGYRFQKGIGVGKFVRSNIFTVGGFDWAASILMEFGGDKIEMIRHLLVAADRYAMDRLKLICQHILGKSLHVDNVATTLALANVHVTTTHLIFPRQTPQ |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g12970 | LOC_Os08g12970.1 | Chr08 | 7698287 | 7699299 | - | MSU_osa1r7 | ||
| CDS seq | ATGCTTTCAGGGTTAACGCCAATCACCAAAGCCAAGACGACGGCATCAAGATGCACCACAGGGTCAGAGGTGGGTGGGCACATATTTGAGATCAACGGGTACAGATTCCAGAAGGGCATCGGTGTTGGCAAGTTTGTCCGGTCGAACATCTTCACTGTCGGTGGCTTCGACTGGGCAGCTTCTATCCTGATGGAGTTTGGAGGTGATAAGATTGAGATGATCCGGCATTTACTTGTGGCTGCGGATAGATATGCCATGGACAGGCTCAAGTTGATTTGCCAACACATCCTTGGCAAGAGTCTTCATGTGGACAATGTGGCAACTACATTGGCTTTGGCAAACGTGCACGTCACAACTACACACCTGATTTTTCCTAGACAAACACCTCAATAG
More
|
|||||||
| Protein seq | MLSGLTPITKAKTTASRCTTGSEVGGHIFEINGYRFQKGIGVGKFVRSNIFTVGGFDWAASILMEFGGDKIEMIRHLLVAADRYAMDRLKLICQHILGKSLHVDNVATTLALANVHVTTTHLIFPRQTPQ |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0226100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0226100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0007430 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007500 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0007610 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0007620 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0007440 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0126200 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007400 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0117000 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0007040 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0007120 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0007010 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0007620 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0007090 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G007390 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0007210 | RBH | 0.0 | 0.0 | 1.359160 |
