Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g11480 | OGI:08019250 | 10/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:6734408-6739686 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTGATGACTTTTTCACTTGAAATCATTTAGTATTTGAAAATATTGTTTGAAGTTGTTATATTTTTAAATTCAAATTCAAACTGTTCAAAAAATGTTATATAGGAAAAAGACCAAAGTAAAAGTTATAAATCTTGATGAGTTATACAACTTTGTTGTTGACAATTTTACCATTTGAAATCATTTACTACTCGAAAAAAATATTTGAATTTCTTATATTTTAAAATATAAATTTTATATAGTTCAATCAAACTCGGATGGAGAAATGACCAAAATAAAAATGGTAGATCTCAATGAGTTCTACAACTTTGTTTTTGATAGCTTTTTCATATGAGTTCATTTAGTATCATAAAATTCAATTCGAAATTTATTTTTTCCTAGAAGTCTGATTTGCCTCCTACTCATGATAATACTTGCTAAATATATATTTGATTCAATTAAATTGGATTTGCTGGTGAAATATGTGATCAAAATGGATGTTATGTGAATGTGGTTGTGTTATGTGAATAAATGTATATGAATAGGGAGGTGTGACATCCTAGCCTAGGGCTTAATAGGATTAATAGAATACTCGTACCAACAAATTACAATTTCTTTCTCGAAAACTAGTCTACGAAGAACTATGAGGTTAAGCGTGCTTGGTCTAGAGCAATTCCCGGATGGGTGACCAACCAGAAAATTTGTCCCGGATGCACACTAGGGAGGGCAAAGGCCTGAGGCTAAAAAAAAGCAAAATTAATTTTTTTTGGGTTATACTCATATGTGACAGGCTATAATCTAGGCCCGTTAGAGATGAGAGTCATCCGTGACGTGCTATAATCTAGGCCCGTTAGAGATGAGAGTCATCCGTGATGGGCTTTTGTGTTGGCCCGATTGAGATGTGTCATCCGTGATGGCCGGATGCCCGATTGAGATATTTTCCCACATCACTGACCTTTGGTTAGTGACGGGGGGCAAAGGCCCGAGGCTAAAAAAAAGCAAAATTAATTTTTTTGTGGGTTATACTCATATGTGACAGGCTATAATCTAGGCCCGTTAGAGATGAGAGTCATCCGTGATGGGCTTTTGTGTTGGCCCGATTGAGATGTGTCATCCGTGACGGCCGGATGCCCGATTGAGATATTTTCCCACATCACTGACCTTTGGTTAGTGACGGGGGCCCTGCCCAAAAGAGATGATGCATTAAGCCCGTTAGAGATAACCAATCCCGTTCCAGTGACACTATTAATGGTCATATTTTTCACACCAAGTCCTATGATGAGGGTAGGTCTGTCCAATGTAGTGGAGTGACTCTAGTTGCTCAAACCTCTTCCAAATCTGCTGGAAATAATAATCCAATGGTGGAAAATAAGACCTATTATGGTGCTATAACTGAAATCCTTGAATTGGACTATAAGCACAAGGGAAATATTGCTCTCTTCAAATGTGAGTGGGTTGACAATCGTGTACAGGACAAGTGGATTAAGGTCGATAAGTTGGGAACCACAAATGTTAATCTCAAGCATTTATTTAATACTGGTAGCAAGCTGTCCGATGAGCCTTTTATTTTGGCCTCTCAAGCAGTCCAAGTATACTATGTTGAAGACCCAAGTGACAATGGTTGGAGTGCTGTTATTGAGACAAAACCAAGAGACTTCTATGATATGGCTAAAGTACAAACTGAAAGTTCTGATCACGAAAGTGAACATGTACAATGTCCTGATTTTGGTGGCAGCAACATTACTCCTGATCAAACATATGTGTCTCCCGTTAGATCAGATATTGATGGAATAATTGTTAATGCAACTGAAAAGAGAAAGTATGTCATTTCACCTTCTTCTCAAATGCTATCGTTTACTTTTCTCATGTTTTACATAATTGCTAGCTTGTTTAATAGACCTGCTATTACTTCACATTGTGAAATAAGATACTAAACTATTGTATTTTTCTACAGGAAAAATAATGGCAAGAGAAAGAGGAAATGAGAATACTACCTACCTTAATGAATATGAAAGAGGGAGAGCAGAAAGAATTAAGAAAAACAATATAGCACTACAAGCTATAATTCAAAAGAGAAGGGAGTTGGCTAAATCAAGCGAGGGAAATCTCGGGTCTGCTTCTACTCATCAGGAAACAAGAAAGAGGAAGGTTAGGAATTCTAACATGTCAATTGCTTGATATCGTATTACATGCTAACTGCTTAGGAAGAAAAATCTATTCATCTTCTTGTAGAGAGTCGATTGCGCTGGAAGTGAACCAGCTAGACATGAATCTGGGTTGCCAAATCTGTCTAGATCAACAAGGAGGGGAACAGGGAGTAGTACAAGTACACACGATGAAGATGAAGAACTTGTTGCTAATACAAATCATCTATTCATGCACGATTGCGAAAGAAATGATGAGCTTGCAGAAAATGGAGGTATATTTATTGCAAAGTTCCATATCTCCGCCTTAGCTTTTAATTACAACGTATCTAATTCTGTTTTATTTTTATATAGTTGATGCTATAAATGATGGACAACAAGTATCTTTTACTTTGCTCTTGTTTTACAGAATTGCTAGCTTTTTTTATTGGGGAAATTGCACAAATGCCACTAGGGTTTACCGTATTTCTCATTCTGCCACTGGTTTTTGGTACAGCTGCAGCTGCAGCAATGTGTACATCCAATTATTTCCATCAATGGCTAAAGCTGCAGCAAGTTGACCTTTATTTTTTCCAACTAAATGTGTACTGTCCATGGCAATATAGGGCCTGCAGCCCAGTAGGAACCCATCAATACAAGGTTTGAGAGCTGTAAATAACCTTCTGAAGCACATCTGACCATTATGCTCTACAGGAAAAAGAATGGCAAATGGAGGAGGAAATGAGAATACAACCTACGTGAATGAATATGAAAGATTGAGAGCAGAAAGAATCAAGAAAAACAATATAGCGCTACAAGCTGTCATTGAAAAGAAAAAGGAGTTGGCTAACTTAAGCGAGGAAAATCTTGGGTCTGCCTCTACTCATCAGGAAACAAGAAAGAGGAAGGTTAGAAATTCTAACATGTCAATTGCATGATATTGTATTACATGTTAACTGCTTAGAAAGAAAAAATATTCATCTTCTTGTAGAAAGCCGCTTGCACTAGTAGTGAGCCAGCCATACTACCGCTTGCACTAGTAATGGCCTTGTATCAGAAGACGCAGAAGCTACCGTTATAAGTATTTTTTTTTAAAAAAAAAGCATTTGGAATCAATTGAGGAACTAGTTAATATATATATACACACACACACACACACACACACACATATACATATATATATATACATACATATATACATATACATATATACATATACATATATATATACATATATATATATATCTGTATATATGTTTAAATTTATAGAAGGCACTTGAGGACGCAGTTGAGGAACATCCGGAGTGGACAGAAAAAAGCATAACTGAAGGGGACCTTATGTCACGTGTATGTGGGCCTGAAAGGAATGGATTTGTTCGCTCAGTGGGGAAGGGACCAACACCTAGAGATTTGGAGATGCCTGGAAAGGAGAAGTATAGATCAACCAAGGTCCAAATGGCTATTGAAGGTCAGAAACAAGCTCAACTGGAGAAAGAAGCTCTAATAGAACATTTTGAAAGAAGGCAGACACAAAGTGATAGAAAAATTGAGTCACTTAGTGAGAAAGTGGAAAGGTTGACTGAATTACTTCTTGCTGATTCTCGAGATGGACGACAAGTGCATGTTAATCCCCAAGTCTTGTCAAATTCTGCAACAAATGAGGTATATAATGCAATGAATAATTTCTATTATAGATTATCAGTGCTTGTTTCTGTTTTCATTATTTTGGGACAACTCATTTTTGTAGGATGAACAAGAGAGTGCAAATGGCGAAGCTCAGCCGAGTGATGAGGAAAACAATTCCTATGGAATGGTATGTACAATAAGCCTACACTGAAAATGAATATTGTCCCTTCTCCATAGTACAGTATATAATGTGATCTATGCACATGCAGATACCTCCAAGACCTGCAGCTCCTTCACCGCAAGAACACATGGTGATAACCTCTGTTATTTTTCTTTTTTCACTTCTGTTTCACACAATTCTTGTGCATCACTACAATGAAACACTCACATGTTGTAGGCTGGAAAAGAAGTTATCTTATACTCGTTTATTAGACCCCCATGATACTCCTGTTGCAAAGGGTACCCTGCTGTCAGCAAATCGGATGACTGTAGTGAGTGGCACTCAATTGGGTCCTGATTGTTGTGAAGTTGTGGTGAATCACGTGCTGAAAAGGGCTGCTCCATTCCTTCGTCCGTATGGTAACATGAACTACATTTCTGATGCTGTTGGAAGGTCTATTGCATGGCCACGACAACATGTAATCATCCATCTGACTGTCTATTGTTTGAAATTCACTTTGATTTTCTTGTCTCAGTTATGTACTTGCATATGTTATAATCTGTAGATAAAGGAACAACAAAAGTCTCTAGCACAACCTGAAGGTAGCCGTGTTCGTGGTAAGTATATGAATTCTGTTAACTATGTGGCTTGCCTCATGCATATTTGGATTGATGTGATGCTGGATATGAGTGGCTTGCATAGAATAATATAGTTTCTGAACCTTACCACAAGGTCACTTAATTTTAGGACTGCAGCCTATGATTGTTTGTCAAATTAACCACATGGACTAGTATAGTTACCTAGAACATTTTATCCAACATGAAACCTTTTGGGAGGTTATGTTGTCATGTGCTACAGAGACAAGGGCAACAGAGACAAGGGCATATGGAGCTAGAACCATTATGTTGTCATTTTGTTTCTTTGATCCTAGCCAGTTTGCATGGTCTTGTCAGTTTGTGATAAGAATGTATTTATATTATGATAGATAGTTCTTTATATTCTACATGCAAGATTGCTCACAGATTCCAAACTATTATTTTTAGGTCAAAATCGGAAGGGCTACTGAAATTGTTCTGCTAAAGGGTTACTTGTCCCAGAAATTGTCCATTGAAGATTTTTTGCTGAAGTTATTTCTGAATGAAGACCTGCTAAAGATATCACTTGTCCCAACAACAAAGACCTACAAAAGACCCATTGTGTATTTATATTAGAATTTGAAAGAGATGTCACTTAAAGTTAATGAATGCTAAGAATTATCTGTACTCATATGCATATGCTCTATGCTCTATGCAGAGGCATGTAAATATTGCTCCTAGGTGCAACATAATTGTTACTCATGAATTTGTTATTGCTGAAACTGTGGTATGGAACCCTACAATGCAATGTTTTCTGC
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| CDS seq | ATGCAACTGAAAAGAGAAAGAAAAATAATGGCAAGAGAAAGAGGAAATGAGAATACTACCTACCTTAATGAATATGAAAGAGGGAGAGCAGAAAGAATTAAGAAAAACAATATAGCACTACAAGCTATAATTCAAAAGAGAAGGGAGTTGGCTAAATCAAGCGAGGGAAATCTCGGGTCTGCTTCTACTCATCAGGAAACAAGAAAGAGGAAGAGAGTCGATTGCGCTGGAAGTGAACCAGCTAGACATGAATCTGGGTTGCCAAATCTGTCTAGATCAACAAGGAGGGGAACAGGGAGTAGTACAAGTACACACGATGAAGATGAAGAACTTGTTGCTAATACAAATCATCTATTCATGCACGATTGCGAAAGAAATGATGAGCTTGCAGAAAATGGAGGAAAAAGAATGGCAAATGGAGGAGGAAATGAGAATACAACCTACGTGAATGAATATGAAAGATTGAGAGCAGAAAGAATCAAGAAAAACAATATAGCGCTACAAGCTGTCATTGAAAAGAAAAAGGAGTTGGCTAACTTAAGCGAGGAAAATCTTGGGTCTGCCTCTACTCATCAGGAAACAAGAAAGAGGAAGTTGAGGAACATCCGGAGTGGACAGAAAAAAGCATAA
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| Protein seq | MQLKRERKIMARERGNENTTYLNEYERGRAERIKKNNIALQAIIQKRRELAKSSEGNLGSASTHQETRKRKRVDCAGSEPARHESGLPNLSRSTRRGTGSSTSTHDEDEELVANTNHLFMHDCERNDELAENGGKRMANGGGNENTTYVNEYERLRAERIKKNNIALQAVIEKKKELANLSEENLGSASTHQETRKRKLRNIRSGQKKA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g11480 | LOC_Os08g11480.1 | Chr08 | 6734408 | 6739686 | + | MSU_osa1r7 | ||
| CDS seq | ATGCAACTGAAAAGAGAAAGAAAAATAATGGCAAGAGAAAGAGGAAATGAGAATACTACCTACCTTAATGAATATGAAAGAGGGAGAGCAGAAAGAATTAAGAAAAACAATATAGCACTACAAGCTATAATTCAAAAGAGAAGGGAGTTGGCTAAATCAAGCGAGGGAAATCTCGGGTCTGCTTCTACTCATCAGGAAACAAGAAAGAGGAAGAGAGTCGATTGCGCTGGAAGTGAACCAGCTAGACATGAATCTGGGTTGCCAAATCTGTCTAGATCAACAAGGAGGGGAACAGGGAGTAGTACAAGTACACACGATGAAGATGAAGAACTTGTTGCTAATACAAATCATCTATTCATGCACGATTGCGAAAGAAATGATGAGCTTGCAGAAAATGGAGGAAAAAGAATGGCAAATGGAGGAGGAAATGAGAATACAACCTACGTGAATGAATATGAAAGATTGAGAGCAGAAAGAATCAAGAAAAACAATATAGCGCTACAAGCTGTCATTGAAAAGAAAAAGGAGTTGGCTAACTTAAGCGAGGAAAATCTTGGGTCTGCCTCTACTCATCAGGAAACAAGAAAGAGGAAGTTGAGGAACATCCGGAGTGGACAGAAAAAAGCATAA
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| Protein seq | MQLKRERKIMARERGNENTTYLNEYERGRAERIKKNNIALQAIIQKRRELAKSSEGNLGSASTHQETRKRKRVDCAGSEPARHESGLPNLSRSTRRGTGSSTSTHDEDEELVANTNHLFMHDCERNDELAENGGKRMANGGGNENTTYVNEYERLRAERIKKNNIALQAVIEKKKELANLSEENLGSASTHQETRKRKLRNIRSGQKKA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.669766 | 2.938215 | 1.106385 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007000 | RBH | 1.588899 | 7.233455 | 6.134221 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0007030 | RBH | 14.961460 | 19.998011 | 49.869961 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0108800 | RBH | 1.2326125 | 1.502744 | 3.356231 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006900 | RBH | 0.183666 | 0.000000 | 1.215345 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0104100 | RBH | 3.3329515 | 9.9625235 | 6.735686 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006680 | RBH | 0.655259 | 0.695744 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
