Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g05220 | OGI:08007130 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:2714548-2718049 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAGCGACTCGTTCCTTATCCTTAGTAACTTTTGCAAGGGCTCGCATCCGTGATTGAACCAAATCCTCCCTTTCATCGACCATGAGATTATAATACTCATCGGCTGTCAAATCATCTTGTAATTCCGTTCTCCTTGAGCCGATTCTAACTTTCCATGGCAAAACAGCCTCATGTCCATAAACAAGCTTATAAGGAGGGACTTGGATCGACCCATGACAAGCCATCCGATAAGACCATAATGCTTCGGCTAAACGAATATGCTATTGCCGAGGATAATCAGAAATCTTCCTCTTAATCAATTTGATCAAGCACTTGTAGATGCCTCGGCCTGCCCATTAGCTTGTGCATAATGCGGTGAAGAATTCAATAATTTGATACCCATGCTATCGGAAAACTGAACAAACTCATCAGACACGAAAATTGAACCTTGATCGGTTGTAATGGTTTGAGGAGTACCAAATCGATAGATTATATGCTCTTGAATAAATTGTATAGCATCCCCAGAATCAACCTTCTTCAAAGGAATCGCTTTTACCCACTTGGTAAAATAATCGGTTCCACCAATATAAACTTGTGTCATTTACTTGATGGTGGATTAATCATGCCGATCATATCAATTCCCCAACCTCTAAATGGCCATGGTTTTATGATAGGATTCATAGCCGATGCCGGTGCTCTCTGGTTCGCCCCAAATTTCTGACAATCCTGACATCCCTTGTAATATTTGAAACAATCCTCTAGCATCGTCGGCCAAAAATATCCTGCACGTCGAAGCAGCCACTTCATCTTATGAGCCGATTGATGAGTGCCACAAATTCCCTCATGAACTTCTCCGATTGCAAACTTAGCCTGATCGGCACTCAAACATTTAAGCAAGACCCCATCAATCGTGCGATAATAGAGCTCATCATCCAATAAAGTATACTTCAACGCTTTATACCTTAATTTCCGAGAAGCCGATTGAGACGGATTTTGTAAATACTGATGTACATCATATCTCCAATCGTCGGCTGTCAGGGCAGCAACTTCAATCTTAACATCTTTGATCATCTGCTTATACCCCGATGCCCCTTGAGCTAAATCATTAGCTTCAATATTCTGCTCTCGAGATACATGCTTCAAAGTTACTAGCTGAAATTCCTTCATCAGCTCCTGGCATTTCTCATTATAAACTATTATCGTATCATTCTTGCACTCATATTCTCCTACCAATTGATTGATCACTAGTAAAGAATCTCCAATAATTTCGATAGCATCGGCTTCAACTTCTTTGAGTAACTGCAACCCTTTGAGAACTGCCTCATATTCAGCTTGATTATTAGTCGCATAAGGTTTAATGGTATAAGCCAACTCAAAACATGCCTCCCGAGGGGAAGTTATCATTAAGCCGATACCACAACCATGAGTACATACTGATCCGTCGAAGAATAAAATCGATGGCCCGATCTCAACTGAGCTGATTGAATCATCACGATGATCAACAATGAAATCGGCTATAGCCTGTCCTTTGACCGCCTTTGGTGATTCATACCGAAGATCAAACTCAGTTAAGGAAAATATCCACTTTCCAACCCTTCCTTTCAAAATTGGAGCCGATAACATGTACTTGACAACATCAGCCTTGCATATGACAGTGCATTCATTGGACAATAGATAATGCCTCACCCTTTTACATGAAAAATATAGGCACAAGCATAACTTCTCCACAGAAGAATATCTAGTCTCTGCATCCAAAAGCCGTCGACTCAGATAAAACACAGCTCTTTCCTTTCCTTCAAGCTCCTGAATCAAGACCGAGCTGATCGACTTCTCGCCGGCCAACAGATATAATCGAAAAGGTATCCCTTTCTGTGGAGGAATCAAAACTGGAGGAGAACTCAGATATTCCTTAATATCATCCAAAGCTTTCTGCTGCTCTGCCCCCCAAGTAAACTGTTGATCGGCCTTCAATCTCAATAATGGTATAAAAGTGTCACATCCTGATTTTCGTTTCAGGATTTATAAATTATTTAATAAATCATTAATAGAATTTATATTAAATGTTCTTTAATTTACAAGTGAAGTTAAATGTGGGAAATAAAATTTCCTAAATATAAAGCATGGATGGATTTAATTTTTGTTAAATTCTCCATGGTTAAGTCAACTCTCTGAAATTTTCTCGGATTTTTCGGAGCTCAATTCCTAATTTTAATCATACAAAGAACATTTCAGTAATAATCCACATATTAAATTAATCATTAAATGGTCTGGTTTTAATATTGTTAAATACTTTGAGTGTCCAAGTATTTTCATGATTTTTCTTGAAATTATTTGAGCATTGGAAGTATTTTTAACAATTCAAAGATCATTTAAGTGATTATTTTAATTGGGAAAGTAATAAAATCCTCCTCCTCCGCTTGGGCCATTTTCGGCCCAACATCTTCTCTCTCCCGCGCGGCCGAGCCGGCCCAAACGGCCCAGCCGACGCCTCCCGCCTCTCCTTCCTCGGGTCACTGACATGTGGGGCCCACATGTCAGGCCTTTCCCCTACCTCCGGCCGGCTGCCCTAGCCGAGCCCGAGTCGGCCGCCGCGCCAACTTGCCGCGCCGATCCCGCACCCAATCCGGCCTCTTCTCTTCCGATTAGTTGAGGGGAAATATTCCTCTTATTCTCCTCTTCCTTTTCCCCAAGAAATCCCCAAAATTTTTTATGGAAATCCTTTCCAATTTCGCGGATCAAATCCTTTCCTTTTTCCGGCGAAGATAAACTTTCCCGAGTTTTTCCCGTCGTTTTGGGCCCGGACCCGAGCTTCCAAGGCTTTAAATAGGACCCCCTAGTCCTCCTCTTTCGTTTGCCCCCTCTCCCGAGCTCTCTAGTGCCCCGTAGCCTCGTCGCCGCGCGCGTTAAGTTCGTCGCCGCCACCGGCCGAGTGCAGCCGCGCCGCCGCGCCGCTTCTGCCGTCGCCGCCGCTTGCCGCCGTCGCCAAGAGGTGCGCCAAGGGGTGGAGAAGCCCGGCCGCCCGTCCTTCTTCACCGCCGGCCGCCGTAGCTCGCCGTCGTCGGTGAGGTCCAAGCCGCCGCCGCCTCCTCTCGTCGCCGGCCGTCGTCGGACGTCGATTGTCGTTGTGGTGAGTACCGTTGGGTTCGCCTCGTCGTCCTCTACGTGTGCATGCCCTCCAAATCCGCAGCCGGCCGCTCTATCTCCGGCGAGGTCGTATCGTGGTTCGCCGGCGCCGCTCCAGCAGCCCCGCGCCGTCGCTGTGGTCGTCGCCTTCGGTCGCCGCTGCCGCCGTTGGGTTCGCGAGGAGGAGAAGAAGACCGGCCTCCACTTCCCCGTCGTCGAAGACCCCGGGAAGCCCGTCGTCATCGTGAAGGCCGAACCGTTGCCATGTTTTGATCTCCGGCGAAGCCCTGCTGCTCCTCCCGTCATCGCCCTCTGTCGCCATCGACTCCATTGGATTCGCAGCTGCGAAGTGAAGCCCGGCCACCCCTCTGTTGTCGCCGCACATCGCCGGAAAGTCAT
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| CDS seq | ATGACTTTCCGGCGATGTGCGGCGACAACAGAGGGGTGGCCGGGCTTCACTTCGCAGCTGCGAATCCAATGGAGTCGATGGCGACAGAGGGCGATGACGGGAGGAGCAGCAGGGCTTCGCCGGAGATCAAAACATGGCAACGGTTCGGCCTTCACGATGACGACGGGCTTCCCGGGGTCTTCGACGACGGGGAAGTGGAGGCCGGTCTTCTTCTCCTCCTCGCGAACCCAACGGCGGCAGCGGCGACCGAAGGCGACGACCACAGCGACGGCGCGGGGCTGCTGGAGCGGCGCCGGCGAACCACGATACGACCTCGCCGGAGATAGAGCGGCCGGCTGCGGATTTGGAGGGCATGCACACGTAGAGGACGACGAGGCGAACCCAACGGTACTCACCACAACGACAATCGACGTCCGACGACGGCCGGCGACGAGAGGAGGCGGCGGCGGCTTGGACCTCACCGACGACGGCGAGCTACGGCGGCCGGCGGTGAAGAAGGACGGGCGGCCGGGCTTCTCCACCCCTTGGCGCACCTCTTGGCGACGGCGGCAAGCGGCGGCGACGGCAGAAGCGGCGCGGCGGCGCGGCTGCACTCGGCCGGTGGCGGCGACGAACTTAACGCGCGCGGCGACGAGGCTACGGGGCACTAGAGAGCTCGGGAGAGGGGGCAAACGAAAGAGGAGGACTAGGGGGTCCTATTTAAAGCCTTGGAAGCTCGGGTCCGGGCCCAAAACGACGGGAAAAACTCGGGAAAGTTTATCTTCGCCGGAAAAAGGAAAGGATTTGATCCGCGAAATTGGAAAGGATTTCCATAAAAAATTTTGGGGATTTCTTGGGGAAAAGGAAGAGGAGAATAAGAGGAATATTTCCCCTCAACTAATCGGAAGAGAAGAGGCCGGATTGGGTGCGGGATCGGCGCGGCAAGTTGGCGCGGCGGCCGACTCGGGCTCGGCTAGGGCAGCCGGCCGGAGGGTGAGGCATTATCTATTGTCCAATGAATGCACTGTCATATGCAAGGCTGATGTTGTCAAGTACATGTTATCGGCTCCAATTTTGAAAGGAAGGGTTGGAAAGTGGATATTTTCCTTAACTGAGTTTGATCTTCGGTATGAATCACCAAAGGCGGTCAAAGGACAGGCTATAGCCGATTTCATTGTTGATCATCGTGATGATTCAATCAGCTCAGTTGAGATCGGGCCATCGATTTTATTCTTCGACGGATCAGTATGTACTCATGGTTGTGGTATCGGCTTAATGATAACTTCCCCTCGGGAGGCATGTTTTGAGTTGGCTTATACCATTAAACCTTATGCGACTAATAATCAAGCTGAATATGAGGCAGTTCTCAAAGGGTTGCAGTTACTCAAAGAAGTTGAAGCCGATGCTATCGAAATTATTGGAGATTCTTTACTAGTGATCAATCAATTGGTAGGAGAATATGAGTGCAAGAATGATACGATAATAGTTTATAATGAGAAATGCCAGGAGCTGATGAAGGAATTTCAGCTAGTAACTTTGAAGCATGTATCTCGAGAGCAGAATATTGAAGCTAATGATTTAGCTCAAGGGGCATCGGGGTATAAGCAGATGATCAAAGATGTTAAGATTGAAGTTGCTGCCCTGACAGCCGACGATTGGAGATATGATGTACATCAGTATTTACAAAATCCGTCTCAATCGGCTTCTCGGAAATTAAGGTATAAAGCGTTGAAGTATACTTTATTGGATGATGAGCTCTATTATCGCACGATTGATGGGGTCTTGCTTAAATGTTTGAGTGCCGATCAGGCTAAGTTTGCAATCGGAGAAGTTCATGAGGGAATTTGTGGCACTCATCAATCGGCTCATAAGATGAAGTGGCTGCTTCGACGTGCAGGATATTTTTGGCCGACGATGCTAGAGGATTGTTTCAAATATTACAAGGGATGTCAGGATTGTCAGAAATTTGGGGCGAACCAGAGAGCACCGGCATCGGCTATGAATCCTATCATAAAACCATGGCCATTTAGAGGTTGGGGAATTGATATGATCGGCATGATTAATCCACCATCAACCGAAGCATTATGGTCTTATCGGATGGCTTGTCATGGGTCGATCCAAGTCCCTCCTTATAAGCTTGTTTATGGACATGAGGCTGTTTTGCCATGGAAAGTTAGAATCGGCTCAAGGAGAACGGAATTACAAGATGATTTGACAGCCGATGAGTATTATAATCTCATGGTCGATGAAAGGGAGGATTTGGTTCAATCACGGATGCGAGCCCTTGCAAAAGTTACTAAGGATAAGGAACGAGTCGCTTGA
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| Protein seq | MTFRRCAATTEGWPGFTSQLRIQWSRWRQRAMTGGAAGLRRRSKHGNGSAFTMTTGFPGSSTTGKWRPVFFSSSRTQRRQRRPKATTTATARGCWSGAGEPRYDLAGDRAAGCGFGGHAHVEDDEANPTVLTTTTIDVRRRPATRGGGGGLDLTDDGELRRPAVKKDGRPGFSTPWRTSWRRRQAAATAEAARRRGCTRPVAATNLTRAATRLRGTRELGRGGKRKRRTRGSYLKPWKLGSGPKTTGKTRESLSSPEKGKDLIREIGKDFHKKFWGFLGEKEEENKRNISPQLIGREEAGLGAGSARQVGAAADSGSARAAGRRVRHYLLSNECTVICKADVVKYMLSAPILKGRVGKWIFSLTEFDLRYESPKAVKGQAIADFIVDHRDDSISSVEIGPSILFFDGSVCTHGCGIGLMITSPREACFELAYTIKPYATNNQAEYEAVLKGLQLLKEVEADAIEIIGDSLLVINQLVGEYECKNDTIIVYNEKCQELMKEFQLVTLKHVSREQNIEANDLAQGASGYKQMIKDVKIEVAALTADDWRYDVHQYLQNPSQSASRKLRYKALKYTLLDDELYYRTIDGVLLKCLSADQAKFAIGEVHEGICGTHQSAHKMKWLLRRAGYFWPTMLEDCFKYYKGCQDCQKFGANQRAPASAMNPIIKPWPFRGWGIDMIGMINPPSTEALWSYRMACHGSIQVPPYKLVYGHEAVLPWKVRIGSRRTELQDDLTADEYYNLMVDEREDLVQSRMRALAKVTKDKERVA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g05220 | LOC_Os08g05220.1 | Chr08 | 2714548 | 2718049 | - | MSU_osa1r7 | ||
| CDS seq | ATGACTTTCCGGCGATGTGCGGCGACAACAGAGGGGTGGCCGGGCTTCACTTCGCAGCTGCGAATCCAATGGAGTCGATGGCGACAGAGGGCGATGACGGGAGGAGCAGCAGGGCTTCGCCGGAGATCAAAACATGGCAACGGTTCGGCCTTCACGATGACGACGGGCTTCCCGGGGTCTTCGACGACGGGGAAGTGGAGGCCGGTCTTCTTCTCCTCCTCGCGAACCCAACGGCGGCAGCGGCGACCGAAGGCGACGACCACAGCGACGGCGCGGGGCTGCTGGAGCGGCGCCGGCGAACCACGATACGACCTCGCCGGAGATAGAGCGGCCGGCTGCGGATTTGGAGGGCATGCACACGTAGAGGACGACGAGGCGAACCCAACGGTACTCACCACAACGACAATCGACGTCCGACGACGGCCGGCGACGAGAGGAGGCGGCGGCGGCTTGGACCTCACCGACGACGGCGAGCTACGGCGGCCGGCGGTGAAGAAGGACGGGCGGCCGGGCTTCTCCACCCCTTGGCGCACCTCTTGGCGACGGCGGCAAGCGGCGGCGACGGCAGAAGCGGCGCGGCGGCGCGGCTGCACTCGGCCGGTGGCGGCGACGAACTTAACGCGCGCGGCGACGAGGCTACGGGGCACTAGAGAGCTCGGGAGAGGGGGCAAACGAAAGAGGAGGACTAGGGGGTCCTATTTAAAGCCTTGGAAGCTCGGGTCCGGGCCCAAAACGACGGGAAAAACTCGGGAAAGTTTATCTTCGCCGGAAAAAGGAAAGGATTTGATCCGCGAAATTGGAAAGGATTTCCATAAAAAATTTTGGGGATTTCTTGGGGAAAAGGAAGAGGAGAATAAGAGGAATATTTCCCCTCAACTAATCGGAAGAGAAGAGGCCGGATTGGGTGCGGGATCGGCGCGGCAAGTTGGCGCGGCGGCCGACTCGGGCTCGGCTAGGGCAGCCGGCCGGAGGGTGAGGCATTATCTATTGTCCAATGAATGCACTGTCATATGCAAGGCTGATGTTGTCAAGTACATGTTATCGGCTCCAATTTTGAAAGGAAGGGTTGGAAAGTGGATATTTTCCTTAACTGAGTTTGATCTTCGGTATGAATCACCAAAGGCGGTCAAAGGACAGGCTATAGCCGATTTCATTGTTGATCATCGTGATGATTCAATCAGCTCAGTTGAGATCGGGCCATCGATTTTATTCTTCGACGGATCAGTATGTACTCATGGTTGTGGTATCGGCTTAATGATAACTTCCCCTCGGGAGGCATGTTTTGAGTTGGCTTATACCATTAAACCTTATGCGACTAATAATCAAGCTGAATATGAGGCAGTTCTCAAAGGGTTGCAGTTACTCAAAGAAGTTGAAGCCGATGCTATCGAAATTATTGGAGATTCTTTACTAGTGATCAATCAATTGGTAGGAGAATATGAGTGCAAGAATGATACGATAATAGTTTATAATGAGAAATGCCAGGAGCTGATGAAGGAATTTCAGCTAGTAACTTTGAAGCATGTATCTCGAGAGCAGAATATTGAAGCTAATGATTTAGCTCAAGGGGCATCGGGGTATAAGCAGATGATCAAAGATGTTAAGATTGAAGTTGCTGCCCTGACAGCCGACGATTGGAGATATGATGTACATCAGTATTTACAAAATCCGTCTCAATCGGCTTCTCGGAAATTAAGGTATAAAGCGTTGAAGTATACTTTATTGGATGATGAGCTCTATTATCGCACGATTGATGGGGTCTTGCTTAAATGTTTGAGTGCCGATCAGGCTAAGTTTGCAATCGGAGAAGTTCATGAGGGAATTTGTGGCACTCATCAATCGGCTCATAAGATGAAGTGGCTGCTTCGACGTGCAGGATATTTTTGGCCGACGATGCTAGAGGATTGTTTCAAATATTACAAGGGATGTCAGGATTGTCAGAAATTTGGGGCGAACCAGAGAGCACCGGCATCGGCTATGAATCCTATCATAAAACCATGGCCATTTAGAGGTTGGGGAATTGATATGATCGGCATGATTAATCCACCATCAACCGAAGCATTATGGTCTTATCGGATGGCTTGTCATGGGTCGATCCAAGTCCCTCCTTATAAGCTTGTTTATGGACATGAGGCTGTTTTGCCATGGAAAGTTAGAATCGGCTCAAGGAGAACGGAATTACAAGATGATTTGACAGCCGATGAGTATTATAATCTCATGGTCGATGAAAGGGAGGATTTGGTTCAATCACGGATGCGAGCCCTTGCAAAAGTTACTAAGGATAAGGAACGAGTCGCTTGA
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| Protein seq | MTFRRCAATTEGWPGFTSQLRIQWSRWRQRAMTGGAAGLRRRSKHGNGSAFTMTTGFPGSSTTGKWRPVFFSSSRTQRRQRRPKATTTATARGCWSGAGEPRYDLAGDRAAGCGFGGHAHVEDDEANPTVLTTTTIDVRRRPATRGGGGGLDLTDDGELRRPAVKKDGRPGFSTPWRTSWRRRQAAATAEAARRRGCTRPVAATNLTRAATRLRGTRELGRGGKRKRRTRGSYLKPWKLGSGPKTTGKTRESLSSPEKGKDLIREIGKDFHKKFWGFLGEKEEENKRNISPQLIGREEAGLGAGSARQVGAAADSGSARAAGRRVRHYLLSNECTVICKADVVKYMLSAPILKGRVGKWIFSLTEFDLRYESPKAVKGQAIADFIVDHRDDSISSVEIGPSILFFDGSVCTHGCGIGLMITSPREACFELAYTIKPYATNNQAEYEAVLKGLQLLKEVEADAIEIIGDSLLVINQLVGEYECKNDTIIVYNEKCQELMKEFQLVTLKHVSREQNIEANDLAQGASGYKQMIKDVKIEVAALTADDWRYDVHQYLQNPSQSASRKLRYKALKYTLLDDELYYRTIDGVLLKCLSADQAKFAIGEVHEGICGTHQSAHKMKWLLRRAGYFWPTMLEDCFKYYKGCQDCQKFGANQRAPASAMNPIIKPWPFRGWGIDMIGMINPPSTEALWSYRMACHGSIQVPPYKLVYGHEAVLPWKVRIGSRRTELQDDLTADEYYNLMVDEREDLVQSRMRALAKVTKDKERVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g29070 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0005290 | SBH | 0.793385 | 5.205525 | 4.885180 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0005310 | SBH | 0.336700 | 0.676014 | 1.094957 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0005350 | SBH | 0.600266 | 0.000000 | 5.005242 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005330 | SBH | 0.147439 | 0.165950 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0041300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0004870 | SBH | 0.297755 | 0.637010 | 0.466896 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0046200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0004850 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0005040 | SBH | 0.203199 | 2.808403 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004950 | SBH | 1.571585 | 0.0 | 1.152029 |
