Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_08g0004850 | OGI:08011550 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr08:4217332-4220988 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggcactgcaaaCaacatagcccgtgttattttctcctttcaattcataaattgaacaggcaacagaaatagctgcagtatccctttgtattttgttatactgccaatctcaatctgtacctcgttacacggatctactcgctgcatcacctcatattggctcaaaaatagttaacagttctgtagtattgctactgggaacgagcataattgctagcctccagttctaatcattcatccctacgccattacacagaaatttagagactatctcctcccactgaaattaccatgtcagcattgcagttcaagctagcaaacatgctggctaactgtaaacttggtgaaacttgccccacattcgagtcgttgggtctgaccatctgaatcaactggaaatagaatgttgccacatagcttcactccgataaaagttggtgcaatgcacaaattactctcgatcgcaatcactaggtcataggaagttcgcctgctcttgaacttcgccaactgtagaaaggaagatatcaggtgcaacactaagtcactgtaacagcatgcaaagtgaattctgaaagcaatttctcaccaggaagttcaacggctaagttagcttgagcatcagcatccgtgttaaattcctacataataataagcaaacgtgagtggtacagtgattgaagttctcgcttccagtagtttggagtgatttttaaaaattttaatagtacatgaagaagtgtgatgattgcccattggagaggcagtttcagaggggcaaataagggagttgccaatttccaatggaaaataaagagttaattcaatataatgtaatgtggtgccaaaattcatatgccataccggaatgatagctgatataaaataaaatacagcaagcgtgaaagacagcaaatatatggaacacctacccttaaaacatggttgatttgaaatgtatgaaatcttcccttaatttccttaacccttttgcacaagtcagccatagtatcatgcctagcacgccatacatctgagacctgctccagaaagtcaacatgttacttatgttaagaaacgttaaaattgatagagctgccacctgctagaaaagctcttcaacgagctgtagtgattagttccaacagagtttgttatccattgaggcattgataatcaaggccttgattcaaaatatgtactgatgcctcaacttgcacttatgttgatggatgcagcacagataatttgataaaaaaattctttggtgaggaaaactgaagaacatgacagatcaagtaaagcgcagattaaaaattttgcttttaaaaaattctatttgttggaaatttaatgtttgaatagaatgatagactgtgcatagtcacaacaaactgcagtacaacattcagttatctcctgatgattataggctaaagcatgaaaaatagaagtagtgaaggttcaaccaaaacacaaacctggttacaaacaagcttagaatctccttgagcacgtatatacttgaatcccttcttggcagcatatgttagccctaggatcaatgcacggtattcagcagcattgttggttgcaatacccaaaccctcccgtagttgagcaatctccagtcaaacagtaaaaacacatcaccagttagtcatgataattgaagattaagaaagcaccccagtatagtactgtaggtgtactgtgtacataccacagttccatctagtcgccttattactgctccagcacctgctttcccaggatttcctttagaagcaccatcaaattcaagaagacaagagagctgtataagatgaagtccactggtgagaacaagtcagcatttcgttgtagtgaagacaagtccccaagtacaaatgttagtactgaatatctaggacaaataaccaagcaagaaggcagaagcatttatagctagcacattccattgttcatactcacagaactattaggtaatggttcttgttcggagactttgggctgtttctttgacggtccagtttccttcagcaaatgattgttggtgagagaatgtgatatgtaggcaacacattttctacagcgggcactttttaacacaaacacatcttaacacttagcttgaaaatgatcgatactcaccatctctagtggcctttttaaagtagaagtcccagttccatcaggttgctgaaacaaaaagcggcacacagtatgttatgggcaaacacagaatcaaatagtaacgcaacaaccttggtggatataacttaatgatcaactcaacattcaaggtatgagaaactacatgtgagaaaaactaagaccctgagaattgggggcagttcggcattcagtatttaagtatactatattaatcatgccattatactcTGAtgatgatcatatatgtctttctaatataaggtgtagcatgattgaagttcaaacagataatgaaatggagtgaaatggtaataaggtcaaacaaatatatagaaaatgcgaacataattaaggaagtggtgcttggtaactggaaaggtaagatccattataaatgtctaggctgaaaatgctgtacatcaacaaattagcattgcacaatacactatgggggcacagagaatgatcctttaataggaaacacgttaacatatctatgcaacattggcaagtgcagaggcatatttctgaaaaaaagctgaaatcacaaacatacatcgtctttacctggaaagggcatggaactaggtcatcaaataattcatctcttgcatctgctgcattaatggagtaaagaggatttcttaaaccgcgcgcagcgaggtattcttctgtctctttacgcaaagaatagcctttgtacaccgtcacagaaggatcacatacctagtaagatatacttcacataagaaatggctcttgactacaggtacccgttaatgtcgttgtgttaccagcaagagaaggttaaattttgcatcaatgacactcatcactcttatctcctaatctttacttctctacccactaccacaacaataagtttagtatcctgcgaaatgcatgaacaaagctgcataatgcgtactataaagcagtagcccatcttttcgttcaaggaatacagctgagctacaatgaagtgcaaatgtctgcttatggtgtgacattcatagcaaatgaaatgcgacaggagagcaagtgtttgattcctgtacttctgtatttgtgaggagagatggtgaatgcacataaacataatgctagaatgagcagtcaaagaggacggcgtcgcctttaccgagttgctgacttgagcctggcaatcgctgaggctcttgtagatgccgatgacgtcacccttgcggacgacatagaacggctcacctccgtccatcgacggcggcggcggtggctggctgctctgcttcgcggcggcggcggatctcttggcggagcgccgggatgaagcggagaagaagcgctcgagggcaaggccaatgggcggcggcgcgggtggcctgagcaccaggtgacgctgctggtggtggtggtgctggctcagagctcctccggccaccgcgtgcctcctccaagccactctagaaattccacagagagaagaagcgcaactcctcat
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| CDS seq | atgaggagttgcgcttcttctctctgtggaatttctagagtggcttggaggaggcacgcggtggccggaggagctctgagccagcaccaccaccaccagcagcgtcacctggtgctcaggccacccgcgccgccgcccattggccttgccctcgagcgcttcttctccgcttcatcccggcgctccgccaagagatccgccgccgccgcgaagcagagcagccagccaccgccgccgccgtcgatggacggaggtgagccgttctatgtcgtccgcaagggtgacgtcatcggcatctacaagagcctcagcgattgccaggctcaagtcagcaactcggtatgtgatccttctgtgacggtgtacaaaggctattctttgcgtaaagagacagaagaatacctcgctgcgcgcggtttaagaaatcctctttactccattaatgcagcagatgcaagagatgaattatttgatgacctagttccatgccctttccagcaacctgatggaactgggacttctactttaaaaaggccactagagatggaaactggaccgtcaaagaaacagcccaaagtctccgaacaagaaccattacctaatagttctctctcttgtcttcttgaatttgatggtgcttctaaaggaaatcctgggaaagcaggtgctggagcagtaataaggcgactagatggaactgtgattgctcaactacgggagggtttgggtattgcaaccaacaatgctgctgaataccgtgcattgatcctagggctaacatatgctgccaagaagggattcaagtatatacgtgctcaaggagattctaagcttgtttgtaaccaggtctcagatgtatggcgtgctaggcatgatactatggctgacttgtgcaaaagggttaaggaaattaagggaagatttcatacatttcaaatcaaccatgttttaagggaatttaacacggatgctgatgctcaagctaacttagccgttgaacttcctgttggcgaagttcaagagcaggcgaacttcctatga
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| Protein seq | MRSCASSLCGISRVAWRRHAVAGGALSQHHHHQQRHLVLRPPAPPPIGLALERFFSASSRRSAKRSAAAAKQSSQPPPPPSMDGGEPFYVVRKGDVIGIYKSLSDCQAQVSNSVCDPSVTVYKGYSLRKETEEYLAARGLRNPLYSINAADARDELFDDLVPCPFQQPDGTGTSTLKRPLEMETGPSKKQPKVSEQEPLPNSSLSCLLEFDGASKGNPGKAGAGAVIRRLDGTVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRAQGDSKLVCNQVSDVWRARHDTMADLCKRVKEIKGRFHTFQINHVLREFNTDADAQANLAVELPVGEVQEQANFL |
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| Function | Uncharacterized protein Mb2253c [UniProtKB/Swiss-Prot:P64956] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_08g0004850 | OsGoSa_08g0004850.01 | Chr08 | 4217332 | 4220988 | - | NAM | ||
| CDS seq | atgaggagttgcgcttcttctctctgtggaatttctagagtggcttggaggaggcacgcggtggccggaggagctctgagccagcaccaccaccaccagcagcgtcacctggtgctcaggccacccgcgccgccgcccattggccttgccctcgagcgcttcttctccgcttcatcccggcgctccgccaagagatccgccgccgccgcgaagcagagcagccagccaccgccgccgccgtcgatggacggaggtgagccgttctatgtcgtccgcaagggtgacgtcatcggcatctacaagagcctcagcgattgccaggctcaagtcagcaactcggtatgtgatccttctgtgacggtgtacaaaggctattctttgcgtaaagagacagaagaatacctcgctgcgcgcggtttaagaaatcctctttactccattaatgcagcagatgcaagagatgaattatttgatgacctagttccatgccctttccagcaacctgatggaactgggacttctactttaaaaaggccactagagatggaaactggaccgtcaaagaaacagcccaaagtctccgaacaagaaccattacctaatagttctctctcttgtcttcttgaatttgatggtgcttctaaaggaaatcctgggaaagcaggtgctggagcagtaataaggcgactagatggaactgtgattgctcaactacgggagggtttgggtattgcaaccaacaatgctgctgaataccgtgcattgatcctagggctaacatatgctgccaagaagggattcaagtatatacgtgctcaaggagattctaagcttgtttgtaaccaggtctcagatgtatggcgtgctaggcatgatactatggctgacttgtgcaaaagggttaaggaaattaagggaagatttcatacatttcaaatcaaccatgttttaagggaatttaacacggatgctgatgctcaagctaacttagccgttgaacttcctgttggcgaagttcaagagcaggcgaacttcctatga
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| Protein seq | MRSCASSLCGISRVAWRRHAVAGGALSQHHHHQQRHLVLRPPAPPPIGLALERFFSASSRRSAKRSAAAAKQSSQPPPPPSMDGGEPFYVVRKGDVIGIYKSLSDCQAQVSNSVCDPSVTVYKGYSLRKETEEYLAARGLRNPLYSINAADARDELFDDLVPCPFQQPDGTGTSTLKRPLEMETGPSKKQPKVSEQEPLPNSSLSCLLEFDGASKGNPGKAGAGAVIRRLDGTVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRAQGDSKLVCNQVSDVWRARHDTMADLCKRVKEIKGRFHTFQINHVLREFNTDADAQANLAVELPVGEVQEQANFL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0177800 | RBH | 1.455993 | 1.318956 | 1.613797 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g08050 | RBH | 0.984618 | 0.887108 | 0.415423 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0177800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0005290 | RBH | 0.793385 | 5.205525 | 4.885180 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0005310 | RBH | 0.336700 | 0.676014 | 1.094957 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0005350 | RBH | 0.600266 | 0.000000 | 5.005242 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005330 | RBH | 0.147439 | 0.165950 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0005030 | RBH | 4.744100 | 4.531651 | 3.476120 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0067800 | RBH | 2.5369075 | 3.883986 | 3.1414035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0004870 | RBH | 0.297755 | 0.637010 | 0.466896 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0073800 | RBH | 3.5801015 | 5.091816 | 16.9786425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0004990 | RBH | 0.163867 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0005060 | RBH | 0.177923 | 4.728515 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0005130 | RBH | 0.399444 | 0.622998 | 0.251579 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0005040 | RBH | 0.203199 | 2.808403 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004980 | RBH | 0.348771 | 1.590630 | 1.490409 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004950 | RBH | 1.571585 | 0.0 | 1.152029 |
