Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g02020 | OGI:08001580 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:652657-654279 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAACCTTTCATGTCCTTGCATGCCTCATTGACTGTCCAATTAGTTGTGATTGCATAAAATGCTTGACCAAAATTTCTATTAATAGAGCTGCAAGGCATACACGCAACGCAGTATACGAAGCATTTTTGTCACAGTCCCACCTAATATGACGATCAAATATGAATTTTTATGTTTTGAAAATATGATGATTAAAATTGAACAGAGGGAGTATTTTGTACGGAGGGAGTAGCTTGTACATGCATGGATGCAACTCACGGCGTGGTCACAGCGCCCATGAACTCCTCGTCGGCGACGAGCTTCCCCAGCGCCGCCGGAGCCAGGCAAACCTCCAGCGACATGCTCCCGGCACCGCCCGGCCCCTCGTACACCGTCACCTTGCCGTCGAACTTGTTCGCGCCGCCGCTCCGCACGCTCGCCGGCCTCCCCCACCCGAAGTCGTTGCCGAACACGTCGAACCGCGGCGAGCTCCCCGTGTGGACGGCGGTGCCTCCCGCCGCCTTCGCGAAGTTGGCGAACTCCGGCGCCCGCGGCCACGGCGCGATCGCGCCCCGCATGGCGGCCTCGTCGAGCGACGCCACGAAGCGGTTCAGCTGCCACGCCGTCCACCCGAGCCCTCTCTCCATGACCTCGCCGGCCGTCAGCCTCACCGCGCCGGGCACGACGGCGTTCCCCACGTACCCCGGCGAGATGCCGCTCACGCGCCCCCGGCAACCGATGACCAGTACGTACGCCGTCTCCTGGCGCGGCGTGAGGCCATGAGCTCGCGACACCGAGCGCCAAACATGAGCGAGCAGGGCCTGGAGGGAGGAGATGGTGGCGGCGGCGCCGGCGATCTCGCCGTTCGCCTTCGCCTTGAGCTTCCTTATGCTCTCCGCGGAGAAAGCGAAGAAGCACTCTTGCAATGGAGGTGGTGGGTGGTCGCGTCGCGGGATGATGTGCTCGAGCTTGGCGAACGGCAGAGGGATCGGCACCGGGCAGGTGTCCAGGAACCACCTCTTCACCACCAGAGGTGGCGACGGCGAGATGTCCAGTTTGCTTCTGCTTCGACTGATCTCCGACCATGTGTTCATGAACTCCCAGAAATTGGTGCCGTCGCCGACGACATGGTTGAGCGACATGGCGATGAACACGCCGTCGGAGAGCTCGGTGACCTGCGCGGCAAGAACCGGCAGGGAGTCCGCCGCAGCGACCGCGGGAAGCAGCCCGGTGAGCGGGAAGAAGGACCAGACCACCCGCGGAATGTACAGCGAGGCGGCGATGTCGGCGACGGCGACGTCGGGCGCCGTGGCGTGGACGAACTCAGCGCCTTCGTCGTTGCAGCGCAAGAACACGGAGATGCTGCTCGGAGGCGACGCTCCGTCCTCCACCTCGGCCACGGCGAGGCGGCCGGCGAAGGGGTAGAAGCGGCCGAGTGCGCGAGCGAACGACGACGCCAGGTGTTTGACGAGGTGCTCGCCGCCGGTGGGCGGCTTGGGCAGGAGGACGCCCTTCTGGATGTACTCCGCGGTGAGCAGAGGGAGATCCCACGGCGTCAGGTGCACCGTCGTCTCATGCTCCGGCGGCAACTCCGGCCGGATCACGCGCCGTGACACGACCCGAACGCCGCCGGTGTTGCCTTCCAT
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| CDS seq | ATGGAAGGCAACACCGGCGGCGTTCGGGTCGTGTCACGGCGCGTGATCCGGCCGGAGTTGCCGCCGGAGCATGAGACGACGGTGCACCTGACGCCGTGGGATCTCCCTCTGCTCACCGCGGAGTACATCCAGAAGGGCGTCCTCCTGCCCAAGCCGCCCACCGGCGGCGAGCACCTCGTCAAACACCTGGCGTCGTCGTTCGCTCGCGCACTCGGCCGCTTCTACCCCTTCGCCGGCCGCCTCGCCGTGGCCGAGGTGGAGGACGGAGCGTCGCCTCCGAGCAGCATCTCCGTGTTCTTGCGCTGCAACGACGAAGGCGCTGAGTTCGTCCACGCCACGGCGCCCGACGTCGCCGTCGCCGACATCGCCGCCTCGCTGTACATTCCGCGGGTGGTCTGGTCCTTCTTCCCGCTCACCGGGCTGCTTCCCGCGGTCGCTGCGGCGGACTCCCTGCCGGTTCTTGCCGCGCAGGTCACCGAGCTCTCCGACGGCGTGTTCATCGCCATGTCGCTCAACCATGTCGTCGGCGACGGCACCAATTTCTGGGAGTTCATGAACACATGGTCGGAGATCAGTCGAAGCAGAAGCAAACTGGACATCTCGCCGTCGCCACCTCTGGTGGTGAAGAGGTGGTTCCTGGACACCTGCCCGGTGCCGATCCCTCTGCCGTTCGCCAAGCTCGAGCACATCATCCCGCGACGCGACCACCCACCACCTCCATTGCAAGAGTGCTTCTTCGCTTTCTCCGCGGAGAGCATAAGGAAGCTCAAGGCGAAGGCGAACGGCGAGATCGCCGGCGCCGCCGCCACCATCTCCTCCCTCCAGGCCCTGCTCGCTCATGTTTGGCGCTCGGTGTCGCGAGCTCATGGCCTCACGCCGCGCCAGGAGACGGCGTACGTACTGGTCATCGGTTGCCGGGGGCGCGTGAGCGGCATCTCGCCGGGGTACGTGGGGAACGCCGTCGTGCCCGGCGCGGTGAGGCTGACGGCCGGCGAGGTCATGGAGAGAGGGCTCGGGTGGACGGCGTGGCAGCTGAACCGCTTCGTGGCGTCGCTCGACGAGGCCGCCATGCGGGGCGCGATCGCGCCGTGGCCGCGGGCGCCGGAGTTCGCCAACTTCGCGAAGGCGGCGGGAGGCACCGCCGTCCACACGGGGAGCTCGCCGCGGTTCGACGTGTTCGGCAACGACTTCGGGTGGGGGAGGCCGGCGAGCGTGCGGAGCGGCGGCGCGAACAAGTTCGACGGCAAGGTGACGGTGTACGAGGGGCCGGGCGGTGCCGGGAGCATGTCGCTGGAGGTTTGCCTGGCTCCGGCGGCGCTGGGGAAGCTCGTCGCCGACGAGGAGTTCATGGGCGCTGTGACCACGCCCTCTATTAATAGAAATTTTGGTCAAGCATTTTATGCAATCACAACTAATTGGACAGTCAATGAGGCATGCAAGGACATGAAAGGTTGA
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| Protein seq | MEGNTGGVRVVSRRVIRPELPPEHETTVHLTPWDLPLLTAEYIQKGVLLPKPPTGGEHLVKHLASSFARALGRFYPFAGRLAVAEVEDGASPPSSISVFLRCNDEGAEFVHATAPDVAVADIAASLYIPRVVWSFFPLTGLLPAVAAADSLPVLAAQVTELSDGVFIAMSLNHVVGDGTNFWEFMNTWSEISRSRSKLDISPSPPLVVKRWFLDTCPVPIPLPFAKLEHIIPRRDHPPPPLQECFFAFSAESIRKLKAKANGEIAGAAATISSLQALLAHVWRSVSRAHGLTPRQETAYVLVIGCRGRVSGISPGYVGNAVVPGAVRLTAGEVMERGLGWTAWQLNRFVASLDEAAMRGAIAPWPRAPEFANFAKAAGGTAVHTGSSPRFDVFGNDFGWGRPASVRSGGANKFDGKVTVYEGPGGAGSMSLEVCLAPAALGKLVADEEFMGAVTTPSINRNFGQAFYAITTNWTVNEACKDMKG |
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| Function | Uncharacterized acetyltransferase At3g50280 [UniProtKB/Swiss-Prot:Q9SND9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g02020 | LOC_Os08g02020.1 | Chr08 | 652657 | 654279 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAAGGCAACACCGGCGGCGTTCGGGTCGTGTCACGGCGCGTGATCCGGCCGGAGTTGCCGCCGGAGCATGAGACGACGGTGCACCTGACGCCGTGGGATCTCCCTCTGCTCACCGCGGAGTACATCCAGAAGGGCGTCCTCCTGCCCAAGCCGCCCACCGGCGGCGAGCACCTCGTCAAACACCTGGCGTCGTCGTTCGCTCGCGCACTCGGCCGCTTCTACCCCTTCGCCGGCCGCCTCGCCGTGGCCGAGGTGGAGGACGGAGCGTCGCCTCCGAGCAGCATCTCCGTGTTCTTGCGCTGCAACGACGAAGGCGCTGAGTTCGTCCACGCCACGGCGCCCGACGTCGCCGTCGCCGACATCGCCGCCTCGCTGTACATTCCGCGGGTGGTCTGGTCCTTCTTCCCGCTCACCGGGCTGCTTCCCGCGGTCGCTGCGGCGGACTCCCTGCCGGTTCTTGCCGCGCAGGTCACCGAGCTCTCCGACGGCGTGTTCATCGCCATGTCGCTCAACCATGTCGTCGGCGACGGCACCAATTTCTGGGAGTTCATGAACACATGGTCGGAGATCAGTCGAAGCAGAAGCAAACTGGACATCTCGCCGTCGCCACCTCTGGTGGTGAAGAGGTGGTTCCTGGACACCTGCCCGGTGCCGATCCCTCTGCCGTTCGCCAAGCTCGAGCACATCATCCCGCGACGCGACCACCCACCACCTCCATTGCAAGAGTGCTTCTTCGCTTTCTCCGCGGAGAGCATAAGGAAGCTCAAGGCGAAGGCGAACGGCGAGATCGCCGGCGCCGCCGCCACCATCTCCTCCCTCCAGGCCCTGCTCGCTCATGTTTGGCGCTCGGTGTCGCGAGCTCATGGCCTCACGCCGCGCCAGGAGACGGCGTACGTACTGGTCATCGGTTGCCGGGGGCGCGTGAGCGGCATCTCGCCGGGGTACGTGGGGAACGCCGTCGTGCCCGGCGCGGTGAGGCTGACGGCCGGCGAGGTCATGGAGAGAGGGCTCGGGTGGACGGCGTGGCAGCTGAACCGCTTCGTGGCGTCGCTCGACGAGGCCGCCATGCGGGGCGCGATCGCGCCGTGGCCGCGGGCGCCGGAGTTCGCCAACTTCGCGAAGGCGGCGGGAGGCACCGCCGTCCACACGGGGAGCTCGCCGCGGTTCGACGTGTTCGGCAACGACTTCGGGTGGGGGAGGCCGGCGAGCGTGCGGAGCGGCGGCGCGAACAAGTTCGACGGCAAGGTGACGGTGTACGAGGGGCCGGGCGGTGCCGGGAGCATGTCGCTGGAGGTTTGCCTGGCTCCGGCGGCGCTGGGGAAGCTCGTCGCCGACGAGGAGTTCATGGGCGCTGTGACCACGCCCTCTATTAATAGAAATTTTGGTCAAGCATTTTATGCAATCACAACTAATTGGACAGTCAATGAGGCATGCAAGGACATGAAAGGTTGA
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| Protein seq | MEGNTGGVRVVSRRVIRPELPPEHETTVHLTPWDLPLLTAEYIQKGVLLPKPPTGGEHLVKHLASSFARALGRFYPFAGRLAVAEVEDGASPPSSISVFLRCNDEGAEFVHATAPDVAVADIAASLYIPRVVWSFFPLTGLLPAVAAADSLPVLAAQVTELSDGVFIAMSLNHVVGDGTNFWEFMNTWSEISRSRSKLDISPSPPLVVKRWFLDTCPVPIPLPFAKLEHIIPRRDHPPPPLQECFFAFSAESIRKLKAKANGEIAGAAATISSLQALLAHVWRSVSRAHGLTPRQETAYVLVIGCRGRVSGISPGYVGNAVVPGAVRLTAGEVMERGLGWTAWQLNRFVASLDEAAMRGAIAPWPRAPEFANFAKAAGGTAVHTGSSPRFDVFGNDFGWGRPASVRSGGANKFDGKVTVYEGPGGAGSMSLEVCLAPAALGKLVADEEFMGAVTTPSINRNFGQAFYAITTNWTVNEACKDMKG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0112300 | SBH | 0.849318 | 1.003973 | 0.266946 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g02030 | RBH | 0.566318 | 0.665809 | 0.067756 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0112300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0000870 | SBH | 0.0 | 0.909262 | 2.871330 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0000880 | RBH | 0.0 | 0.654937 | 1.145858 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0000890 | SBH | 0.251580 | 0.0 | 1.976283 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0000880 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0000850 | RBH | 0.0 | 0.000000 | 1.391108 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0010400 | RBH | 2.728351 | 6.668773 | 3.754102 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0000800 | RBH | 0.0 | 0.0 | 0.433899 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0010900 | RBH | 0 | 0.351297 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0000920 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0000830 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0000870 | SBH | 0.0 | 1.911565 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0000850 | RBH | 0.0 | 0.032118 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0000870 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G000900 | SBH | 0.0 | 0.545325 | 0.433683 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0000860 | SBH | 0.0 | 0.0 | 1.345536 |
