Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g45950 | OGI:07060300 | 6/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:27421098-27423642 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTAAATGGATGATAGCGTACGTAGTGCTGCTTGTATTGATGCTCCTGCTGACGATCAGCAGGCTCCAGTTCCCAAGTATAATCAAACTACTAAATGGTACTCTTGGCAGCAAACAAGAATTTTGGTGTCAATTTACTCTGAAGTTGTGCATAATTGCTTCGATCATAATGCCTGTGCTTATTGTGCCTGATACAAGCGATCGATATGTTATCATCATACTGGAAGCTCTTGCTTTAGTGTTAGTATTATTTGGCAACTTACAGATTCCAACAGCGACTGTCCGTGTCGCGCTTGCACTGTTGCGCCTTCTACCACACAACTACTACAGTGACGACGAGCCTATTGACGAGAAGAACTTCGGAGATAAGACAAATCTAGTTGCATCTCTGAACATCTTCTATGGGATGGTGCTTGGCCAAGGGATTCTCTACATTACAGCCTGTATCTTTGAGGTCTTCTCATTTATCCCTCGGAGATCGCTAATCCGCCATGGTGGATTTGAAGGTCAGTGGGGGGTGGCATCTATCAATTTGTACTACGCACACGCCTTCGAGAAATACATGGAAGGAGGTGTGCTTGCTCCAAAGAAGATCAGCCTCGTCACCTTTGCAATGGATTCCCTGAACTCAGACTCACCCAAGATGCAGCTCTACAGTGTCCAGATGCTACACATTTTTCTGCAAAGGGAACCGATCAGGGAACGGGTCATAGCAAAGCTCACCACCTCTACCAAGAACATGGCAAGATTAATCAACATGTTGGGATGGACAAGTCCAAGTCATAAAGTAGTCAGATTATATGCTGCGAAGGCCACTGTTGAGCTTGCGAAGAGCCTCCGAGTTGTCACCGTTCCTGGGACAATGCAGCTTGTATCTTCACTTCTAGACATTGATGGCAAACAGAAAAGGGGAAACCCGCTTTTGGATGTAGATGGTGACCACGAGGGAAAGCTAGATCCAACTTACAGTACATCAGAAAGCCAAGAGGAAAGGCATGATGCAATTAGGGATACAGCAGCTGAAGAATGCCAAGTACACGAGCCGCTTCAGGACACTGATAACCTACTTGAGACACATATCCGAACTAACCACATCAACGAACGGAACTCCTCCATACTCAGAAGCTGACAGCGGATTTCAGAGTATTGGTCAATCCCCAAGGAGCAGCCATTGACAGACCATGACCTTCTTCCTGCACTGGGCATGTCGATTCTTGACGATCTTGCTAGTTGTGATCAAAATAACTGTGTAGAAATTGATAGAGTAACTGACCTCATTCCAAAGATCATAGGATTCACAAACTTCAGGATTGTCATAAAAAACAATGGGGCACAACAAATGGTCCTAGCAAAGTCATCACTGAAGGTGCTGCAAAGGCTGACGAGCATTGGAGGGGAAATCGGCGTAGCATTGCGGATTTGCGGTACAAGATATCGAAACATCCCTTCTTGTTAAGAAATCTCGGAGTGATCTTAGGAGACAACAGCAGTGATCAAGAATTAAGTAAGCTTGTGGCAGGAATCCTCAGAAACCTTGCTATTGATCGTGACACAAGGCAGGAGATTGGGCACATGCAGGTGCTTATAACCAGGTTGATGAAGACATTCCTCAATTTAGATAGAACCTCCAGCACAAATGTTGATTGCTTGCTACCAAAGGTTGCCGAGCAAGCACTGGCAATGCTGGCAATGGATAATGTGCATAACTGCTTAGTTATGTTGAATGAACCAGAGTGCACTAATAAACTGAAAAATATGATCCCTAATCCATGATGAGAAGTATACATATGCGGCGGCTAGCCTGCTGTGTAGCATGTGCCAGCACGCCCAAGCCAAGCTCACAGAATCAGACTTGAAGGAACTATGCCACACCTTGCGAGAGGTAAACCCTGCTCCTTCATGCTACAGATGCAATGAATATTTGTTGTGTATAATGTGCTTTGTTGTTTGCATATGTTCTTTTATGCCAGCTGATGAAATTCCACTTACACTTTATTAAATGGGAGCATTTATTTACTAGTGAACTAGAGTTTTTTTTTTTGGCTGAATCATGCTGTTACAACTCATGCTGCATTGTGTTGTTGTTTCCATTACAGGTGTTGGAAAGAATAATGAATGTAGAAGGGGCAGAACTAGAGATCCTCATTGGCCTATGTTCACATATATGCAAAGTCATTCCTAAAGAATTTGTCCAAGAGCTGGAGGGTGGACAGATTAAGAAAAGATTTATGAAGAGACTAGTTGACACACTGAATGCAAATATGAACCCAGGTGGTCATTGTTCTGGAATCAGGAGGGTGATAATTGAGCAATCCATATACATGATGGAGTGCAATTCTCACTATGCCAATTGCTTCAATGAATTACAGATGATGGAAGCACTATCGATGGTAGAAGAGATGCCCTCAAGGGCTGAGAACTATAGGATTTTCTTGGGTGACGTGGGTTTCATGGAATACAGTACACCTCTCATTGCTCTTGTGGACAGAGCAAAAGAACTGATGGGTCAACAGTGTTTGCAAGGAGTTAGTAGTGCCAACTGA
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| CDS seq | ATGGCTAAATGGATGATAGCGTACGTAGTGCTGCTTGTATTGATGCTCCTGCTGACGATCAGCAGGCTCCAGTTCCCAAGTATAATCAAACTACTAAATGGTACTCTTGGCAGCAAACAAGAATTTTGGTGTCAATTTACTCTGAAGTTGTGCATAATTGCTTCGATCATAATGCCTGTGCTTATTGTGCCTGATACAAGCGATCGATATGTTATCATCATACTGGAAGCTCTTGCTTTAGTGTTAGTATTATTTGGCAACTTACAGATTCCAACAGCGACTGTCCGTGTCGCGCTTGCACTGTTGCGCCTTCTACCACACAACTACTACAGTGACGACGAGCCTATTGACGAGAAGAACTTCGGAGATAAGACAAATCTAGTTGCATCTCTGAACATCTTCTATGGGATGGTGCTTGGCCAAGGGATTCTCTACATTACAGCCTGTATCTTTGAGGTCTTCTCATTTATCCCTCGGAGATCGCTAATCCGCCATGGTGGATTTGAAGGTCAGTGGGGGGTGGCATCTATCAATTTGTACTACGCACACGCCTTCGAGAAATACATGGAAGGAGGTGTGCTTGCTCCAAAGAAGATCAGCCTCGTCACCTTTGCAATGGATTCCCTGAACTCAGACTCACCCAAGATGCAGCTCTACAGTGTCCAGATGCTACACATTTTTCTGCAAAGGGAACCGATCAGGGAACGGGTCATAGCAAAGCTCACCACCTCTACCAAGAACATGGCAAGATTAATCAACATGTTGGGATGGACAAGTCCAAGTCATAAAGTAGTCAGATTATATGCTGCGAAGGCCACTGTTGAGCTTGCGAAGAGCCTCCGAGTTGTCACCGTTCCTGGGACAATGCAGCTTGTATCTTCACTTCTAGACATTGATGGCAAACAGAAAAGGGGAAACCCGCTTTTGGATGTAGATGGTGACCACGAGGGAAAGCTAGATCCAACTTACAGTACATCAGAAAGCCAAGAGGAAAGGCATGATGCAATTAGGGATACAGCAGCTGAAGAATGCCAAGATTGTCATAAAAAACAATGGGGCACAACAAATGGTCCTAGCAAAGTCATCACTGAAGGTGCTGCAAAGGCTGACGAGCATTGGAGGGGAAATCGGCGTAGCATTGCGGATTTGCGGTACAAGATATCGAAACATCCCTTCTTGTTAAGAAATCTCGGAGTGATCTTAGGAGACAACAGCAGTGATCAAGAATTAAGTAAGCTTGTGGCAGGAATCCTCAGAAACCTTGCTATTGATCGTGACACAAGGCAGGAGATTGGGCACATGCAGGTGTTGGAAAGAATAATGAATGTAGAAGGGGCAGAACTAGAGATCCTCATTGGCCTATGTTCACATATATGCAAAGTCATTCCTAAAGAATTTGTCCAAGAGCTGGAGGGTGGACAGATTAAGAAAAGATTTATGAAGAGACTAGTTGACACACTGAATGCAAATATGAACCCAGGTGGTCATTGTTCTGGAATCAGGAGGGTGATAATTGAGCAATCCATATACATGATGGAGTGCAATTCTCACTATGCCAATTGCTTCAATGAATTACAGATGATGGAAGCACTATCGATGGTAGAAGAGATGCCCTCAAGGGCTGAGAACTATAGGATTTTCTTGGGTGACGTGGGTTTCATGGAATACAGTACACCTCTCATTGCTCTTGTGGACAGAGCAAAAGAACTGATGGGTCAACAGTGTTTGCAAGGAGTTAGTAGTGCCAACTGA
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| Protein seq | MAKWMIAYVVLLVLMLLLTISRLQFPSIIKLLNGTLGSKQEFWCQFTLKLCIIASIIMPVLIVPDTSDRYVIIILEALALVLVLFGNLQIPTATVRVALALLRLLPHNYYSDDEPIDEKNFGDKTNLVASLNIFYGMVLGQGILYITACIFEVFSFIPRRSLIRHGGFEGQWGVASINLYYAHAFEKYMEGGVLAPKKISLVTFAMDSLNSDSPKMQLYSVQMLHIFLQREPIRERVIAKLTTSTKNMARLINMLGWTSPSHKVVRLYAAKATVELAKSLRVVTVPGTMQLVSSLLDIDGKQKRGNPLLDVDGDHEGKLDPTYSTSESQEERHDAIRDTAAEECQDCHKKQWGTTNGPSKVITEGAAKADEHWRGNRRSIADLRYKISKHPFLLRNLGVILGDNSSDQELSKLVAGILRNLAIDRDTRQEIGHMQVLERIMNVEGAELEILIGLCSHICKVIPKEFVQELEGGQIKKRFMKRLVDTLNANMNPGGHCSGIRRVIIEQSIYMMECNSHYANCFNELQMMEALSMVEEMPSRAENYRIFLGDVGFMEYSTPLIALVDRAKELMGQQCLQGVSSAN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g45950 | LOC_Os07g45950.1 | Chr07 | 27421098 | 27423642 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTAAATGGATGATAGCGTACGTAGTGCTGCTTGTATTGATGCTCCTGCTGACGATCAGCAGGCTCCAGTTCCCAAGTATAATCAAACTACTAAATGGTACTCTTGGCAGCAAACAAGAATTTTGGTGTCAATTTACTCTGAAGTTGTGCATAATTGCTTCGATCATAATGCCTGTGCTTATTGTGCCTGATACAAGCGATCGATATGTTATCATCATACTGGAAGCTCTTGCTTTAGTGTTAGTATTATTTGGCAACTTACAGATTCCAACAGCGACTGTCCGTGTCGCGCTTGCACTGTTGCGCCTTCTACCACACAACTACTACAGTGACGACGAGCCTATTGACGAGAAGAACTTCGGAGATAAGACAAATCTAGTTGCATCTCTGAACATCTTCTATGGGATGGTGCTTGGCCAAGGGATTCTCTACATTACAGCCTGTATCTTTGAGGTCTTCTCATTTATCCCTCGGAGATCGCTAATCCGCCATGGTGGATTTGAAGGTCAGTGGGGGGTGGCATCTATCAATTTGTACTACGCACACGCCTTCGAGAAATACATGGAAGGAGGTGTGCTTGCTCCAAAGAAGATCAGCCTCGTCACCTTTGCAATGGATTCCCTGAACTCAGACTCACCCAAGATGCAGCTCTACAGTGTCCAGATGCTACACATTTTTCTGCAAAGGGAACCGATCAGGGAACGGGTCATAGCAAAGCTCACCACCTCTACCAAGAACATGGCAAGATTAATCAACATGTTGGGATGGACAAGTCCAAGTCATAAAGTAGTCAGATTATATGCTGCGAAGGCCACTGTTGAGCTTGCGAAGAGCCTCCGAGTTGTCACCGTTCCTGGGACAATGCAGCTTGTATCTTCACTTCTAGACATTGATGGCAAACAGAAAAGGGGAAACCCGCTTTTGGATGTAGATGGTGACCACGAGGGAAAGCTAGATCCAACTTACAGTACATCAGAAAGCCAAGAGGAAAGGCATGATGCAATTAGGGATACAGCAGCTGAAGAATGCCAAGATTGTCATAAAAAACAATGGGGCACAACAAATGGTCCTAGCAAAGTCATCACTGAAGGTGCTGCAAAGGCTGACGAGCATTGGAGGGGAAATCGGCGTAGCATTGCGGATTTGCGGTACAAGATATCGAAACATCCCTTCTTGTTAAGAAATCTCGGAGTGATCTTAGGAGACAACAGCAGTGATCAAGAATTAAGTAAGCTTGTGGCAGGAATCCTCAGAAACCTTGCTATTGATCGTGACACAAGGCAGGAGATTGGGCACATGCAGGTGTTGGAAAGAATAATGAATGTAGAAGGGGCAGAACTAGAGATCCTCATTGGCCTATGTTCACATATATGCAAAGTCATTCCTAAAGAATTTGTCCAAGAGCTGGAGGGTGGACAGATTAAGAAAAGATTTATGAAGAGACTAGTTGACACACTGAATGCAAATATGAACCCAGGTGGTCATTGTTCTGGAATCAGGAGGGTGATAATTGAGCAATCCATATACATGATGGAGTGCAATTCTCACTATGCCAATTGCTTCAATGAATTACAGATGATGGAAGCACTATCGATGGTAGAAGAGATGCCCTCAAGGGCTGAGAACTATAGGATTTTCTTGGGTGACGTGGGTTTCATGGAATACAGTACACCTCTCATTGCTCTTGTGGACAGAGCAAAAGAACTGATGGGTCAACAGTGTTTGCAAGGAGTTAGTAGTGCCAACTGA
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| Protein seq | MAKWMIAYVVLLVLMLLLTISRLQFPSIIKLLNGTLGSKQEFWCQFTLKLCIIASIIMPVLIVPDTSDRYVIIILEALALVLVLFGNLQIPTATVRVALALLRLLPHNYYSDDEPIDEKNFGDKTNLVASLNIFYGMVLGQGILYITACIFEVFSFIPRRSLIRHGGFEGQWGVASINLYYAHAFEKYMEGGVLAPKKISLVTFAMDSLNSDSPKMQLYSVQMLHIFLQREPIRERVIAKLTTSTKNMARLINMLGWTSPSHKVVRLYAAKATVELAKSLRVVTVPGTMQLVSSLLDIDGKQKRGNPLLDVDGDHEGKLDPTYSTSESQEERHDAIRDTAAEECQDCHKKQWGTTNGPSKVITEGAAKADEHWRGNRRSIADLRYKISKHPFLLRNLGVILGDNSSDQELSKLVAGILRNLAIDRDTRQEIGHMQVLERIMNVEGAELEILIGLCSHICKVIPKEFVQELEGGQIKKRFMKRLVDTLNANMNPGGHCSGIRRVIIEQSIYMMECNSHYANCFNELQMMEALSMVEEMPSRAENYRIFLGDVGFMEYSTPLIALVDRAKELMGQQCLQGVSSAN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0653000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45540 | SBH | 0.319966 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0653000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025880 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025930 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025760 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025590 | SBH | 0.020997 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0447700 | SBH | 1.501979 | 5.911939 | 2.230384 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0459900 | SBH | 0.161702 | 0.0971685 | 1.213974 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025910 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0025960 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025650 | SBH | 0.043011 | 0.394089 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025560 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
