Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g45450 | OGI:07006270 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:27110363-27111637 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGGGCACAGAGACAGAATCAAATGAAGACTATGGGATGTTATTCAGGTTATCACAGGAGGGAGGCATCACCTATACAAAATTAATCCAGCAAGTCTCTGTCTCATCTAATGCAATTCTTCCTGGTGCTCAGGTGGCAGTGAGTAGAAATAAAACACATATTAAATGAAAATATTTAAACTAAAACTTTATGTGCACAGTCATAACCCCCACTGTATTTTTTTTTTTTGCAAAACAGGGTGGTCTTCCTTTGCTCCAAAACAGTTGTGGCAGTTTCATGCAGCTATTGCAAGCTCCTATTGAATCAGAGGTGTGTTCCCTCTTGTTTATTTGATTTGTGCTGTGCCATCCCATTATTTGATTAAAAACATATTCATGATTGATGTGGATATAGCTAATATGGATAAAAGTTCAAATCAAAATAGAATTATAAAAAGGTCTCTTTATTAGAATTTTTTTTCTTACCATTGCAGACTGCTCTATATTTGACATCCAATAGATTTGAGTATGACAACACCTTTTGGGGTTTCGATCCTCACAATGGTTATCAACAAAATGACCTGCAAAATGCACAAACAGACACCTCTCAGATTTGCAACTCTTTGCCACAAAGTGTAGATGTGCATCCTCCTGTGGCATCACTGGACATGCTATATGATGAAATGCAGAAATCAAGTGCTGATGTTGATAATCAAGCTGAGATGTGCAGGTCAACAGTACAATTGAAAGCATCATCTGTAGAAGTGATTTATAATGAAATGCAGACTCAAAACATTGAGGCTGATGCCTGTTTTGACCAGCACTTTGAGCAAGCAACAGAAGAGGATTTATTGTCTGATCATGCAATAGTTACATTTCAGCAAGTTGAGGAAATAGAACAAGATAAAAGTGCAGAAAATCCAAATCAAAATTTTAGTGAGGAAGATATAAACATATTTCTGGAGAATGAAAGTGTAACAGCTGTTCAGAGAGGTGGTCAGGAAGCTAACAGTGCACATGTGCCGTCAATCAACAAAGTTTTTGCTGATGAGAATGAAGCTTTTGACTTCTACAATGGCTATGCTTATATGGTTGGTTTCTCTACATGCAAAGCTAGCAATTATCATAGCAGGAAAACCGTCGACGGGGACACGGCGGCGGGGTCGACGTCGGAGCACGGCGCGGCGACGAGGCACAGCGCGGCGGCGGGGCGCGTCGGCTCAGCAGCGGCGGCGGCTTCCAAAGAGGCGGCGACGCCGGGGACGGGAAAGAGAGGGGAAAGGGAGGGGAGGTGGTGA
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| CDS seq | ATGTTATTCAGGTTATCACAGGAGGGAGGCATCACCTATACAAAATTAATCCAGCAAGTCTCTGTCTCATCTAATGCAATTCTTCCTGGTGCTCAGGTGGCAGGTGGTCTTCCTTTGCTCCAAAACAGTTGTGGCAGTTTCATGCAGCTATTGCAAGCTCCTATTGAATCAGAGACTGCTCTATATTTGACATCCAATAGATTTGAGTATGACAACACCTTTTGGGGTTTCGATCCTCACAATGGTTATCAACAAAATGACCTGCAAAATGCACAAACAGACACCTCTCAGATTTGCAACTCTTTGCCACAAAGTGTAGATGTGCATCCTCCTGTGGCATCACTGGACATGCTATATGATGAAATGCAGAAATCAAGTGCTGATGTTGATAATCAAGCTGAGATGTGCAGGTCAACAGTACAATTGAAAGCATCATCTGTAGAAGTGATTTATAATGAAATGCAGACTCAAAACATTGAGGCTGATGCCTGTTTTGACCAGCACTTTGAGCAAGCAACAGAAGAGGATTTATTGTCTGATCATGCAATAGTTACATTTCAGCAAGTTGAGGAAATAGAACAAGATAAAAGTGCAGAAAATCCAAATCAAAATTTTAGTGAGGAAGATATAAACATATTTCTGGAGAATGAAAGTGTAACAGCTGTTCAGAGAGGTGGTCAGGAAGCTAACAGTGCACATGTGCCGTCAATCAACAAAGTTTTTGCTGATGAGAATGAAGCTTTTGACTTCTACAATGGCTATGCTTATATGGTTGGTTTCTCTACATGCAAAGCTAGCAATTATCATAGCAGGAAAACCGTCGACGGGGACACGGCGGCGGGGTCGACGTCGGAGCACGGCGCGGCGACGAGGCACAGCGCGGCGGCGGGGCGCGTCGGCTCAGCAGCGGCGGCGGCTTCCAAAGAGGCGGCGACGCCGGGGACGGGAAAGAGAGGGGAAAGGGAGGGGAGGTGGTGA
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| Protein seq | MLFRLSQEGGITYTKLIQQVSVSSNAILPGAQVAGGLPLLQNSCGSFMQLLQAPIESETALYLTSNRFEYDNTFWGFDPHNGYQQNDLQNAQTDTSQICNSLPQSVDVHPPVASLDMLYDEMQKSSADVDNQAEMCRSTVQLKASSVEVIYNEMQTQNIEADACFDQHFEQATEEDLLSDHAIVTFQQVEEIEQDKSAENPNQNFSEEDINIFLENESVTAVQRGGQEANSAHVPSINKVFADENEAFDFYNGYAYMVGFSTCKASNYHSRKTVDGDTAAGSTSEHGAATRHSAAAGRVGSAAAAASKEAATPGTGKRGEREGRW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g45450 | LOC_Os07g45450.1 | Chr07 | 27110363 | 27111637 | + | MSU_osa1r7 | ||
| CDS seq | ATGTTATTCAGGTTATCACAGGAGGGAGGCATCACCTATACAAAATTAATCCAGCAAGTCTCTGTCTCATCTAATGCAATTCTTCCTGGTGCTCAGGTGGCAGGTGGTCTTCCTTTGCTCCAAAACAGTTGTGGCAGTTTCATGCAGCTATTGCAAGCTCCTATTGAATCAGAGACTGCTCTATATTTGACATCCAATAGATTTGAGTATGACAACACCTTTTGGGGTTTCGATCCTCACAATGGTTATCAACAAAATGACCTGCAAAATGCACAAACAGACACCTCTCAGATTTGCAACTCTTTGCCACAAAGTGTAGATGTGCATCCTCCTGTGGCATCACTGGACATGCTATATGATGAAATGCAGAAATCAAGTGCTGATGTTGATAATCAAGCTGAGATGTGCAGGTCAACAGTACAATTGAAAGCATCATCTGTAGAAGTGATTTATAATGAAATGCAGACTCAAAACATTGAGGCTGATGCCTGTTTTGACCAGCACTTTGAGCAAGCAACAGAAGAGGATTTATTGTCTGATCATGCAATAGTTACATTTCAGCAAGTTGAGGAAATAGAACAAGATAAAAGTGCAGAAAATCCAAATCAAAATTTTAGTGAGGAAGATATAAACATATTTCTGGAGAATGAAAGTGTAACAGCTGTTCAGAGAGGTGGTCAGGAAGCTAACAGTGCACATGTGCCGTCAATCAACAAAGTTTTTGCTGATGAGAATGAAGCTTTTGACTTCTACAATGGCTATGCTTATATGGTTGGTTTCTCTACATGCAAAGCTAGCAATTATCATAGCAGGAAAACCGTCGACGGGGACACGGCGGCGGGGTCGACGTCGGAGCACGGCGCGGCGACGAGGCACAGCGCGGCGGCGGGGCGCGTCGGCTCAGCAGCGGCGGCGGCTTCCAAAGAGGCGGCGACGCCGGGGACGGGAAAGAGAGGGGAAAGGGAGGGGAGGTGGTGA
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| Protein seq | MLFRLSQEGGITYTKLIQQVSVSSNAILPGAQVAGGLPLLQNSCGSFMQLLQAPIESETALYLTSNRFEYDNTFWGFDPHNGYQQNDLQNAQTDTSQICNSLPQSVDVHPPVASLDMLYDEMQKSSADVDNQAEMCRSTVQLKASSVEVIYNEMQTQNIEADACFDQHFEQATEEDLLSDHAIVTFQQVEEIEQDKSAENPNQNFSEEDINIFLENESVTAVQRGGQEANSAHVPSINKVFADENEAFDFYNGYAYMVGFSTCKASNYHSRKTVDGDTAAGSTSEHGAATRHSAAAGRVGSAAAAASKEAATPGTGKRGEREGRW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g08460 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025650 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025700 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025550 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0022030 | RBH | 0.0 | 0.250771 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0022180 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0075400 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0002650 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0077800 | SBH | 0 | 0 | 0.018537 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0021900 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0002710 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0022000 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0002620 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0021910 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G021820 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0021860 | SBH | 0.0 | 0.0 | 0.0 |
