Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g42626 | OGI:07070790 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:25516453-25523184 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CATTGCTCACGCATTTCTCAGCACTTGCACAAACCAGTATTAACCTAAGCTGCCCACATTTGCATTAAATTGAATGTATAACCACCCCCAGCTTCAGAACTGACAGTTCTTAAGGGAAAAAAAAACAGTTTCTTGTCTGTTCTTCAGTAATCATCCTTTTGTCATTCAGAATTTCCCCATTTTTCTTGTTAGAAAACATGAGCCATCCTAGCTATCTACTAGAAGATTTGCTCTAACAACTCCAGAAAAACAATGTTGTGACTTTGTTAGTCTCTTCAAGGGACAAGGGTTTATGGGTGGGTGAACAGGTGAGCAGCCAGGTTGATCTCCACTTCTTTAATACCCTCTACTCCTTCCTCCCCCCTGAATCTCTCTGATTCTTTCTTGCTGACAAACACAATCCATCAAAGAAAAAACAAACATTTCATCAGAGAGAGAGAATCTACTAGCCTACTACTATACAAAGTTGGGGGGAAAGGGAGAGATTTTTGTTCATAGTTTGGGAACAAAGTTTAGTTCTTTTCTTGGGGGAGTCTCCAGGCGAATGTTGCAGCGGCCAAGGTAGGAATGAAGAGGAGGATGAGAGGAGGAGGAGGTGCAGCCATGGCCGTGGCCACTGGAGCTGTGATGCTGTTCTTGGCAGCTACTCTCTCTGGGGTTAGTGCCAACACAGACTCAGATGATGGTAAGTGATCCTTACTTGTTGTAAGTTGTAGCTAATGTATGTATGTTATATCTTGATTGGTGTGTTTTTTTGCTTGAGAAAATTTATCAAGAAACAGTGCAATGTTCTTGGTGGTTTGGTTTGTTTTGATTGTTTGATTGGCAAGAGGCTGGGAAATGGTTCTTGATTCTTCAGTTTGTTTTTGGTCAGTTCACTGCAGTGCTGCTCTAGGTGTACACATTTTTTTTTCAGATTTCTTGCTGTTTGGGGGGGGGGGGGGTGATAAAATGCCAGAGATTTGAACAAATTCAATTTTAGAATAAGTATAACACAAAGAACTGTGTGCAAATGAAAATTTGACAAGAAGCTGAAGATCATACAAGATACAGCCCCCCTTGAAATTTGATCGAAAGACTTACTACCATTAGTAAAGTTCAAAAGTTCCAGCGTCCATCCCTATGACAAACTGTCACACACAAATAAAATCAATCAGAGGAAGTATCAACCATCAAAGGCTTTGATTTGATGAACTGAACATAAGACAAATAAATTCGGGCAGAGGTTGGAAGCTAAGGGTGTGTTTAGTTCACGTCAAAAATGGAAGTTTGATTGAAATTGGAACGATGTGATGGAAATGTTGGAAGTTTATGTATGTAGAAAAGTTTTGATGTGATGGAAAAGTTGGAAGTTTGAAGAAAAAATTGGAAACTAAACCAGGCCTAAAAGCTACTCGCTCCGTTTCAAAATGTTTAACACCGTTGACTTTTTAGTACGTGTTTGACCATTCGTCTTATTAAAAAAATTAAGTAACTATTTATTCTTCTCATATTATTTGATTCATTGTTAAATATACTTTCATGTACACATATAGTTTTACATATTTTACAAAATTTTTTGAATAAGACAAACGGTCAAACATGTGCTAAAGAGTCAACGGTGTCAAACATTTTGAAACGGAGGGAGTATTAAATAGGGCTAGTATGAGAAAACTGTGTTTAAATAGGGACTACAGTGAAAATAAACCAGCACGCGTAGGCTCTGTAGCGATCAGAAACAGGGGCTTATCTGCATAATATTTTATCCATAGGGACCTATTTGCAAATTTCCTTCACTTCCATCTCCGGCGTCGCCGCGGCCGCGCCGCCGTCGGCCGAGCCTAACCTCGCCGTCGCCATCCACGCACCTTGCGCTCGCCTTTCCACCTAGTCAGCAAGTAGCTCCACGCCTCCACCCACCCACCACATGGGCACCGCCGCCGAATCCCGCACCACCGGCATCGTCGAACCCCACCTCCGTCAAGATCTCCGGTCAGCTCCTCCCCCAATCAAGTGGGATGCAGAGCAGCAGATGCATTGCATTTTTTATACATAATCTTGAGCTCCAACCATAGCATTTTAGCTATCCAAATTCCTCTTGGAACTGGAGATTTCGTGGGGAAAGTTTTCTAACACCAAAGTAGGAACAAACTATTGTTATGGTCAATTACCTGCAATTTTTGTTTCATCCAACATTGCTGATAATCCAAATCCTTTTTGTTTTTCATCTATACAGTGAATGCTCTCAATGTCTTGTACACAAGCATGAATTCTCCATCCCAGCTGACGAATTGGGTGTCACAAAATGGAGACCCCTGTGGACAGTCCTGGCTTGGGATCACTTGCTCGGGTTCCAGGGTGACAGCAATGTGAGTTTGAGCCTCTAAAAGGGGTCCTTTGTGGGTGACAAACTACTTAAACTTATTATCTGACATTGTTCCTGAATCCTCTGCAGAAAATTATCCGGCATGGGGATCAACGGGACTTTGGGCTACAACATGAATCTACTGACTTCACTAGTTGAACTGTTAGTGTGATCTCTTGGACAATATAGTCTCAATTCCTTGATAGTTACACAGTCTACATTTTGAGAGTGGTTTTGATCTATTTTTAGCTTTCTGCAGTGATACGAGCAAGAATAATCTTGGAGGCAGTGACATTCCTTATAACCTTCCTCCAAATCTTGAGAGATTGTGAGTTTCATGTCCACGCAACTCAAGTTCCTGCTGTTTTCATGTAAAATTATATTAAGTTCTCACAAAGAATTTTATGTGCAGAAACCTTGCAGAAAACAACTTCACCGGAAGCATACCATACTCTATATCGCAAATGATTGCACTTAGAATTTTGTAAGTTGGAGTTATTGTGCTCATTTCCTCAGTTTTTTTTTTGGGTAGACTCTGACAAAATTTTGTAACTATACTTTTCTGTTGTATGCAGAAATCTTGGACATAATCATCTTGCAACCACCAATGATATGTTCAACCAGCTAACTAACCTAACAACATTGTGAGTGGTTTTCCTGTATTTTTGACTGCCCATACTTGCCTCGTTACCATATGGTTTGTTGTCTTATGTTCAGTAATCTGGCAAGCTAGTGGAAAAACTAAACCAGCTGTCCATTTCTCTCAGGGACCTTTCATACAATACACTTTCGGGTAATATTCCACAAAGCTTCAATTCCTTGACAAATTTGAGAAAACTGTGAGTACGGATGTGTTAATAGATTTTTCAGTTTTTCCGTTGACAAGAACAAAATTAATTTCATAATTTGTTTATAAAGGCAATATTTGCTCCTGTCAGTAATCTGCAGAACAACGGATTCAATGGCACAATAGATGTCCTTGCTGATCTTCCGCTTACTGACTTGTGAGTTGGCATGCATCTGCTAACCAACCTATTCTGATTTATAGTCGAATTCTAATAACACATTTGATTCTACTTCAGAAATGTTGCAAATAACCAATTCACCGGATGGATACCTGATAAGCTAAAGAAAATAAAGAATCTCCAGTAAGTACTTCTGTTACCAATATACTCACGATCTTGCAATTATAGACTTATTGGATGGATACCAACAATATTCTCCTCCTTTTGTAGGACAAATGGAAACTCGTTTGGAAGTGGTCCTTCACCACCACCTCCACCATATCAATCTCCACCTTATAAATCTCCTCCATACAAATCTCCACAATCTCGACAACCTGCTCCTCCAACTACTACTGTTAACAATAATCCGTCTGATGATGGTCGCAAACACTCTAAACTAAGTGGTGGTGCCATAGCCGGAATTGTAGTATGTTTGGTAGTTGTGGGTGCAATAGTTGCCTTCTTTGTGATCAAGAAGAAATATTGGTCATTGCCACGAGGAGGAGATCCTGAACAGAAGGAACCTCTCAGCCCTATTGTTTCAGGATTTAAAGACAGTCTTAAACGTAAGTTTCATGCTAATTGTCAGCTTTGGAATGATTTGCAAACAGTTGTGCAGCACTGCATTTATTTTTTCTATGCTTATCATTTCTCTTTTGCATAGAGGTAAGTAATATGCTGTATTCCCATATCAAAACTACTCTTTTCAGAGATGAAGTCAATCAAGATCATCTCAACAATTGGCAAGGAAGAATTACAGAAAACTGTTTCAATGAATTTAAAACCTCCAACAAGAATTGACTTGCACAAGTCCATTGATGAAAATGATGTCACCAGCAAGTCTTTCACAAGGAAAATAAGTTTTAGTTCCATCAGAACACCTGCATACACTGTGGCAGACCTACAGGTGGCAACAGGCAGCTTCTGTGCTGACAATTTAATTGGAGAGGGGTTATTCGGTCGTGTTTACAAGGCGAAATTCAATGACCACAAGGTGCTTCCACAATTACCTCTTATCCTTACTTTTGAATCTTTTCCTTGCACCAAAAAACCACTGTATTGTTTTTTTACTACCATAGAATCTGCAATTAAGTGGATGTGCTAAACTTGACATGCTAAATCTATATTGTCCTAGACAATAGGCTAAGATGATATGCATCAGTTGATCTATACCTGCTTGGAAATTTTTAGCTGTGGTAGCACGAAAGTGTTCCGTTTACATGATTATCTATGTCTACACACAATTTATGCTTGCATTACTACTGCCAGTCTTTCTTTCCTTCAATAAATAGAGAAAAAAAAATCATTCTATCATATACAAGTACTCAATATTCTTAGTATATGGAATCATGACAAGTATTTACTGTCATCACAGGAGCATTGATTATATGTAATATAAGATGTGGCACTCTCATTTTCTTTACAAGTACCAACCTTTCCAAAAAAAAAAGGACTTATTTTTTCTGTTTGTTAAGATTATATAAAATTCAAGAAACAATTCACACCTTTGGTACTTTCAAATCATCATCCTGGCTACTGCATATTTCAGTCATCACCATTTCTTGTTACTTTCAGGTCCTGGCTGTGAAGAAAATCAATTTCTCTGCATTCCCGGGCCATCCTTCAGATTTGTTCATTGAGTTAGTTGCAAATATTTCAAGGTTAAATCATCCAAGCCTTTCTGAGTTAGTTGGCTACTGTTCAGAGCATGGGCAGTGCTTACTGGCATATGAGTTCTACCGAAATGGTTCTCTTAAAGACTTGCTTCATCTAGTGGATGATCAAAGCCAACCGTTGTCTTGGAATAGCCGTGTGAAGATTGCCCTTGGATCTGCGAGGGCATTAGAGTAAGTGAAACTGTGAAAGAAACGTGCAATTCTTCCCTCCTGTTTTAGAGCTGAAAATTCATGTCAATCATGTGAAACTTTCAGATATCTACATGAAACTTGTTCACCTTCCGTGATACACAAGAATTTCAAGTCATCCAATATTTTTCTGGATAACGAGCTAAATCCCCATCTTTCAGATTCTGGGTTTGCTGACCTTATTCCTAACCGGGAATCTCAGGTAACATATTAGGCATATATCCTCCAACTGTCTTACCGCTGTTTTACATGAATTTAAATCATGATTGATTGCCCGCAGAAATGCTTTACACTTTTTTTTGTTCATTGAAGTATCTAAAGCTCACTTTAGCATAATACTTCATGTGGTATATTGAGAAGATCAAAAAATGATTATTGAATAACATGATAAAATTTCAGGATCGACATACTCTGTACTAGTCCATGGTTACCTAGTATGTTATGACTGTATTTTGCAAATTTTGTTACTGAAAATGCTTATAAAAAAATTGGGGTCCCAAAATTTCTATCCAAACATACTTACATAACGACAATTTCAGGTGTCAGATGAGGACTCAGGATACAGGGCCCCTGAGGTGACCATGTCTGGCCAGTACTCCGTGAAGAGTGACGTGTACAGCTTCGGTGTTGTCATGCTAGAGCTCCTGACTGGCCGGAAACCTTTTGACAGGTGAACACACAGACACTGCACCATCACCATTTCTCCTCAATTTTTCTCAAGTTCTCAAACCTTGCACTGTTGCACAATCCTCTGAACTGAACTGAACTGAACTGTATTGCCCCTTGCTGTCTGAACATTTGCAGATCCCGGCCACGGTCGGAGCAGTCACTGGTCGGGTGGGCAACTCCCCAGCTGCACGACATCGACGCTTTGGACCAGATGGTCGACCCTGCACTCCAGGGGCTGTACCCTTCGAAATCGCTCTCCCGCTTCGCTGACGCGATCGCGCTCTGCGTTCAGGTCAGACCACCATGATCAGTGATCAGCCGATCACCTCCACATCAGCTTCTCCTTTGCTCCCCAAATGCTCCAGTTTTCTTTTTTTTCCATCTTTTGCACACTTCTGATCCTGCTTGCTCCTCAACCTTTTGTCGACAGTCCGAACCGGAGTTCAGGCCGCCGATGTCGGAGGTCGTCCAGTTGCTGGTCCGCCTTGTGCAGAGAGCCAACATGACGAGGATGTGCGGCGCCGACGGTCACTCATGGCGGCGCGACGGCGAATCCCGGGACCAAGAACCATGGTAAAGGGGAAGAAGATAAAATGCTGTATATAGGCGCGAGAGTGATGTGCTGTTCAAAGATGTTTCTTTGCTAGGTGAGTAGTTTAAAAAAAAAAGTTTGAAGTTTGATGATTTGGGCGTGAGCTTAGCAGCGCCCTGTGGCCTGTCACCTGTATGTGCACCAGTGCCAAACCAAGAAACGGATGCTGATTGTTCATGTGCTCGTCACACCTCATTGTCGACGAGCACAACAAATCTTTTCACTCGAGAAAAAAATAATACTCACTCCGTTCTCGAA
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| CDS seq | ATGAAGAGGAGGATGAGAGGAGGAGGAGGTGCAGCCATGGCCGTGGCCACTGGAGCTGTGATGCTGTTCTTGGCAGCTACTCTCTCTGGGGTTAGTGCCAACACAGACTCAGATGATGTGAATGCTCTCAATGTCTTGTACACAAGCATGAATTCTCCATCCCAGCTGACGAATTGGGTGTCACAAAATGGAGACCCCTGTGGACAGTCCTGGCTTGGGATCACTTGCTCGGGTTCCAGGGTGACAGCAATAAAATTATCCGGCATGGGGATCAACGGGACTTTGGGCTACAACATGAATCTACTGACTTCACTAGTTGAACTTGATACGAGCAAGAATAATCTTGGAGGCAGTGACATTCCTTATAACCTTCCTCCAAATCTTGAGAGATTAAACCTTGCAGAAAACAACTTCACCGGAAGCATACCATACTCTATATCGCAAATGATTGCACTTAGAATTTTAAATCTTGGACATAATCATCTTGCAACCACCAATGATATGTTCAACCAGCTAACTAACCTAACAACATTGGACCTTTCATACAATACACTTTCGGGTAATATTCCACAAAGCTTCAATTCCTTGACAAATTTGAGAAAACTTAATCTGCAGAACAACGGATTCAATGGCACAATAGATGTCCTTGCTGATCTTCCGCTTACTGACTTAAATGTTGCAAATAACCAATTCACCGGATGGATACCTGATAAGCTAAAGAAAATAAAGAATCTCCAGACAAATGGAAACTCGTTTGGAAGTGGTCCTTCACCACCACCTCCACCATATCAATCTCCACCTTATAAATCTCCTCCATACAAATCTCCACAATCTCGACAACCTGCTCCTCCAACTACTACTGTTAACAATAATCCGTCTGATGATGGTCGCAAACACTCTAAACTAAGTGGTGGTGCCATAGCCGGAATTGTAGTATGTTTGGTAGTTGTGGGTGCAATAGTTGCCTTCTTTGTGATCAAGAAGAAATATTGGTCATTGCCACGAGGAGGAGATCCTGAACAGAAGGAACCTCTCAGCCCTATTGTTTCAGGATTTAAAGACAGTCTTAAACAGATGAAGTCAATCAAGATCATCTCAACAATTGGCAAGGAAGAATTACAGAAAACTGTTTCAATGAATTTAAAACCTCCAACAAGAATTGACTTGCACAAGTCCATTGATGAAAATGATGTCACCAGCAAGTCTTTCACAAGGAAAATAAGTTTTAGTTCCATCAGAACACCTGCATACACTGTGGCAGACCTACAGGTGGCAACAGGCAGCTTCTGTGCTGACAATTTAATTGGAGAGGGGTTATTCGGTCGTGTTTACAAGGCGAAATTCAATGACCACAAGGTCCTGGCTGTGAAGAAAATCAATTTCTCTGCATTCCCGGGCCATCCTTCAGATTTGTTCATTGAGTTAGTTGCAAATATTTCAAGGTTAAATCATCCAAGCCTTTCTGAGTTAGTTGGCTACTGTTCAGAGCATGGGCAGTGCTTACTGGCATATGAGTTCTACCGAAATGGTTCTCTTAAAGACTTGCTTCATCTAGTGGATGATCAAAGCCAACCGTTGTCTTGGAATAGCCGTGTGAAGATTGCCCTTGGATCTGCGAGGGCATTAGAATATCTACATGAAACTTGTTCACCTTCCGTGATACACAAGAATTTCAAGTCATCCAATATTTTTCTGGATAACGAGCTAAATCCCCATCTTTCAGATTCTGGGTTTGCTGACCTTATTCCTAACCGGGAATCTCAGGTGTCAGATGAGGACTCAGGATACAGGGCCCCTGAGGTGACCATGTCTGGCCAGTACTCCGTGAAGAGTGACGTGTACAGCTTCGGTGTTGTCATGCTAGAGCTCCTGACTGGCCGGAAACCTTTTGACAGATCCCGGCCACGGTCGGAGCAGTCACTGGTCGGGTGGGCAACTCCCCAGCTGCACGACATCGACGCTTTGGACCAGATGGTCGACCCTGCACTCCAGGGGCTGTACCCTTCGAAATCGCTCTCCCGCTTCGCTGACGCGATCGCGCTCTGCGTTCAGTCCGAACCGGAGTTCAGGCCGCCGATGTCGGAGGTCGTCCAGTTGCTGGTCCGCCTTGTGCAGAGAGCCAACATGACGAGGATGTGCGGCGCCGACGGTCACTCATGGCGGCGCGACGGCGAATCCCGGGACCAAGAACCATGGTAA
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| Protein seq | MKRRMRGGGGAAMAVATGAVMLFLAATLSGVSANTDSDDVNALNVLYTSMNSPSQLTNWVSQNGDPCGQSWLGITCSGSRVTAIKLSGMGINGTLGYNMNLLTSLVELDTSKNNLGGSDIPYNLPPNLERLNLAENNFTGSIPYSISQMIALRILNLGHNHLATTNDMFNQLTNLTTLDLSYNTLSGNIPQSFNSLTNLRKLNLQNNGFNGTIDVLADLPLTDLNVANNQFTGWIPDKLKKIKNLQTNGNSFGSGPSPPPPPYQSPPYKSPPYKSPQSRQPAPPTTTVNNNPSDDGRKHSKLSGGAIAGIVVCLVVVGAIVAFFVIKKKYWSLPRGGDPEQKEPLSPIVSGFKDSLKQMKSIKIISTIGKEELQKTVSMNLKPPTRIDLHKSIDENDVTSKSFTRKISFSSIRTPAYTVADLQVATGSFCADNLIGEGLFGRVYKAKFNDHKVLAVKKINFSAFPGHPSDLFIELVANISRLNHPSLSELVGYCSEHGQCLLAYEFYRNGSLKDLLHLVDDQSQPLSWNSRVKIALGSARALEYLHETCSPSVIHKNFKSSNIFLDNELNPHLSDSGFADLIPNRESQVSDEDSGYRAPEVTMSGQYSVKSDVYSFGVVMLELLTGRKPFDRSRPRSEQSLVGWATPQLHDIDALDQMVDPALQGLYPSKSLSRFADAIALCVQSEPEFRPPMSEVVQLLVRLVQRANMTRMCGADGHSWRRDGESRDQEPW |
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| Function | Protein STRUBBELIG-RECEPTOR FAMILY 7 [UniProtKB/Swiss-Prot:Q9LUL4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g42626 | LOC_Os07g42626.1 | Chr07 | 25516453 | 25523184 | + | MSU_osa1r7 | ||
| CDS seq | ATGAAGAGGAGGATGAGAGGAGGAGGAGGTGCAGCCATGGCCGTGGCCACTGGAGCTGTGATGCTGTTCTTGGCAGCTACTCTCTCTGGGGTTAGTGCCAACACAGACTCAGATGATGTGAATGCTCTCAATGTCTTGTACACAAGCATGAATTCTCCATCCCAGCTGACGAATTGGGTGTCACAAAATGGAGACCCCTGTGGACAGTCCTGGCTTGGGATCACTTGCTCGGGTTCCAGGGTGACAGCAATAAAATTATCCGGCATGGGGATCAACGGGACTTTGGGCTACAACATGAATCTACTGACTTCACTAGTTGAACTTGATACGAGCAAGAATAATCTTGGAGGCAGTGACATTCCTTATAACCTTCCTCCAAATCTTGAGAGATTAAACCTTGCAGAAAACAACTTCACCGGAAGCATACCATACTCTATATCGCAAATGATTGCACTTAGAATTTTAAATCTTGGACATAATCATCTTGCAACCACCAATGATATGTTCAACCAGCTAACTAACCTAACAACATTGGACCTTTCATACAATACACTTTCGGGTAATATTCCACAAAGCTTCAATTCCTTGACAAATTTGAGAAAACTTAATCTGCAGAACAACGGATTCAATGGCACAATAGATGTCCTTGCTGATCTTCCGCTTACTGACTTAAATGTTGCAAATAACCAATTCACCGGATGGATACCTGATAAGCTAAAGAAAATAAAGAATCTCCAGACAAATGGAAACTCGTTTGGAAGTGGTCCTTCACCACCACCTCCACCATATCAATCTCCACCTTATAAATCTCCTCCATACAAATCTCCACAATCTCGACAACCTGCTCCTCCAACTACTACTGTTAACAATAATCCGTCTGATGATGGTCGCAAACACTCTAAACTAAGTGGTGGTGCCATAGCCGGAATTGTAGTATGTTTGGTAGTTGTGGGTGCAATAGTTGCCTTCTTTGTGATCAAGAAGAAATATTGGTCATTGCCACGAGGAGGAGATCCTGAACAGAAGGAACCTCTCAGCCCTATTGTTTCAGGATTTAAAGACAGTCTTAAACAGATGAAGTCAATCAAGATCATCTCAACAATTGGCAAGGAAGAATTACAGAAAACTGTTTCAATGAATTTAAAACCTCCAACAAGAATTGACTTGCACAAGTCCATTGATGAAAATGATGTCACCAGCAAGTCTTTCACAAGGAAAATAAGTTTTAGTTCCATCAGAACACCTGCATACACTGTGGCAGACCTACAGGTGGCAACAGGCAGCTTCTGTGCTGACAATTTAATTGGAGAGGGGTTATTCGGTCGTGTTTACAAGGCGAAATTCAATGACCACAAGGTCCTGGCTGTGAAGAAAATCAATTTCTCTGCATTCCCGGGCCATCCTTCAGATTTGTTCATTGAGTTAGTTGCAAATATTTCAAGGTTAAATCATCCAAGCCTTTCTGAGTTAGTTGGCTACTGTTCAGAGCATGGGCAGTGCTTACTGGCATATGAGTTCTACCGAAATGGTTCTCTTAAAGACTTGCTTCATCTAGTGGATGATCAAAGCCAACCGTTGTCTTGGAATAGCCGTGTGAAGATTGCCCTTGGATCTGCGAGGGCATTAGAATATCTACATGAAACTTGTTCACCTTCCGTGATACACAAGAATTTCAAGTCATCCAATATTTTTCTGGATAACGAGCTAAATCCCCATCTTTCAGATTCTGGGTTTGCTGACCTTATTCCTAACCGGGAATCTCAGGTGTCAGATGAGGACTCAGGATACAGGGCCCCTGAGGTGACCATGTCTGGCCAGTACTCCGTGAAGAGTGACGTGTACAGCTTCGGTGTTGTCATGCTAGAGCTCCTGACTGGCCGGAAACCTTTTGACAGATCCCGGCCACGGTCGGAGCAGTCACTGGTCGGGTGGGCAACTCCCCAGCTGCACGACATCGACGCTTTGGACCAGATGGTCGACCCTGCACTCCAGGGGCTGTACCCTTCGAAATCGCTCTCCCGCTTCGCTGACGCGATCGCGCTCTGCGTTCAGTCCGAACCGGAGTTCAGGCCGCCGATGTCGGAGGTCGTCCAGTTGCTGGTCCGCCTTGTGCAGAGAGCCAACATGACGAGGATGTGCGGCGCCGACGGTCACTCATGGCGGCGCGACGGCGAATCCCGGGACCAAGAACCATGGTAA
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| Protein seq | MKRRMRGGGGAAMAVATGAVMLFLAATLSGVSANTDSDDVNALNVLYTSMNSPSQLTNWVSQNGDPCGQSWLGITCSGSRVTAIKLSGMGINGTLGYNMNLLTSLVELDTSKNNLGGSDIPYNLPPNLERLNLAENNFTGSIPYSISQMIALRILNLGHNHLATTNDMFNQLTNLTTLDLSYNTLSGNIPQSFNSLTNLRKLNLQNNGFNGTIDVLADLPLTDLNVANNQFTGWIPDKLKKIKNLQTNGNSFGSGPSPPPPPYQSPPYKSPPYKSPQSRQPAPPTTTVNNNPSDDGRKHSKLSGGAIAGIVVCLVVVGAIVAFFVIKKKYWSLPRGGDPEQKEPLSPIVSGFKDSLKQMKSIKIISTIGKEELQKTVSMNLKPPTRIDLHKSIDENDVTSKSFTRKISFSSIRTPAYTVADLQVATGSFCADNLIGEGLFGRVYKAKFNDHKVLAVKKINFSAFPGHPSDLFIELVANISRLNHPSLSELVGYCSEHGQCLLAYEFYRNGSLKDLLHLVDDQSQPLSWNSRVKIALGSARALEYLHETCSPSVIHKNFKSSNIFLDNELNPHLSDSGFADLIPNRESQVSDEDSGYRAPEVTMSGQYSVKSDVYSFGVVMLELLTGRKPFDRSRPRSEQSLVGWATPQLHDIDALDQMVDPALQGLYPSKSLSRFADAIALCVQSEPEFRPPMSEVVQLLVRLVQRANMTRMCGADGHSWRRDGESRDQEPW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g42626 | LOC_Os07g42626.2 | Chr07 | 25518224 | 25523184 | + | MSU_osa1r7 | ||
| CDS seq | ATGAATGCTCTCAATGTCTTGTACACAAGCATGAATTCTCCATCCCAGCTGACGAATTGGGTGTCACAAAATGGAGACCCCTGTGGACAGTCCTGGCTTGGGATCACTTGCTCGGGTTCCAGGGTGACAGCAATAAAATTATCCGGCATGGGGATCAACGGGACTTTGGGCTACAACATGAATCTACTGACTTCACTAGTTGAACTTGATACGAGCAAGAATAATCTTGGAGGCAGTGACATTCCTTATAACCTTCCTCCAAATCTTGAGAGATTAAACCTTGCAGAAAACAACTTCACCGGAAGCATACCATACTCTATATCGCAAATGATTGCACTTAGAATTTTAAATCTTGGACATAATCATCTTGCAACCACCAATGATATGTTCAACCAGCTAACTAACCTAACAACATTGGACCTTTCATACAATACACTTTCGGGTAATATTCCACAAAGCTTCAATTCCTTGACAAATTTGAGAAAACTTAATCTGCAGAACAACGGATTCAATGGCACAATAGATGTCCTTGCTGATCTTCCGCTTACTGACTTAAATGTTGCAAATAACCAATTCACCGGATGGATACCTGATAAGCTAAAGAAAATAAAGAATCTCCAGACAAATGGAAACTCGTTTGGAAGTGGTCCTTCACCACCACCTCCACCATATCAATCTCCACCTTATAAATCTCCTCCATACAAATCTCCACAATCTCGACAACCTGCTCCTCCAACTACTACTGTTAACAATAATCCGTCTGATGATGGTCGCAAACACTCTAAACTAAGTGGTGGTGCCATAGCCGGAATTGTAGTATGTTTGGTAGTTGTGGGTGCAATAGTTGCCTTCTTTGTGATCAAGAAGAAATATTGGTCATTGCCACGAGGAGGAGATCCTGAACAGAAGGAACCTCTCAGCCCTATTGTTTCAGGATTTAAAGACAGTCTTAAACAGATGAAGTCAATCAAGATCATCTCAACAATTGGCAAGGAAGAATTACAGAAAACTGTTTCAATGAATTTAAAACCTCCAACAAGAATTGACTTGCACAAGTCCATTGATGAAAATGATGTCACCAGCAAGTCTTTCACAAGGAAAATAAGTTTTAGTTCCATCAGAACACCTGCATACACTGTGGCAGACCTACAGGTGGCAACAGGCAGCTTCTGTGCTGACAATTTAATTGGAGAGGGGTTATTCGGTCGTGTTTACAAGGCGAAATTCAATGACCACAAGGTCCTGGCTGTGAAGAAAATCAATTTCTCTGCATTCCCGGGCCATCCTTCAGATTTGTTCATTGAGTTAGTTGCAAATATTTCAAGGTTAAATCATCCAAGCCTTTCTGAGTTAGTTGGCTACTGTTCAGAGCATGGGCAGTGCTTACTGGCATATGAGTTCTACCGAAATGGTTCTCTTAAAGACTTGCTTCATCTAGTGGATGATCAAAGCCAACCGTTGTCTTGGAATAGCCGTGTGAAGATTGCCCTTGGATCTGCGAGGGCATTAGAATATCTACATGAAACTTGTTCACCTTCCGTGATACACAAGAATTTCAAGTCATCCAATATTTTTCTGGATAACGAGCTAAATCCCCATCTTTCAGATTCTGGGTTTGCTGACCTTATTCCTAACCGGGAATCTCAGGTGTCAGATGAGGACTCAGGATACAGGGCCCCTGAGGTGACCATGTCTGGCCAGTACTCCGTGAAGAGTGACGTGTACAGCTTCGGTGTTGTCATGCTAGAGCTCCTGACTGGCCGGAAACCTTTTGACAGATCCCGGCCACGGTCGGAGCAGTCACTGGTCGGGTGGGCAACTCCCCAGCTGCACGACATCGACGCTTTGGACCAGATGGTCGACCCTGCACTCCAGGGGCTGTACCCTTCGAAATCGCTCTCCCGCTTCGCTGACGCGATCGCGCTCTGCGTTCAGTCCGAACCGGAGTTCAGGCCGCCGATGTCGGAGGTCGTCCAGTTGCTGGTCCGCCTTGTGCAGAGAGCCAACATGACGAGGATGTGCGGCGCCGACGGTCACTCATGGCGGCGCGACGGCGAATCCCGGGACCAAGAACCATGGTAA
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| Protein seq | MNALNVLYTSMNSPSQLTNWVSQNGDPCGQSWLGITCSGSRVTAIKLSGMGINGTLGYNMNLLTSLVELDTSKNNLGGSDIPYNLPPNLERLNLAENNFTGSIPYSISQMIALRILNLGHNHLATTNDMFNQLTNLTTLDLSYNTLSGNIPQSFNSLTNLRKLNLQNNGFNGTIDVLADLPLTDLNVANNQFTGWIPDKLKKIKNLQTNGNSFGSGPSPPPPPYQSPPYKSPPYKSPQSRQPAPPTTTVNNNPSDDGRKHSKLSGGAIAGIVVCLVVVGAIVAFFVIKKKYWSLPRGGDPEQKEPLSPIVSGFKDSLKQMKSIKIISTIGKEELQKTVSMNLKPPTRIDLHKSIDENDVTSKSFTRKISFSSIRTPAYTVADLQVATGSFCADNLIGEGLFGRVYKAKFNDHKVLAVKKINFSAFPGHPSDLFIELVANISRLNHPSLSELVGYCSEHGQCLLAYEFYRNGSLKDLLHLVDDQSQPLSWNSRVKIALGSARALEYLHETCSPSVIHKNFKSSNIFLDNELNPHLSDSGFADLIPNRESQVSDEDSGYRAPEVTMSGQYSVKSDVYSFGVVMLELLTGRKPFDRSRPRSEQSLVGWATPQLHDIDALDQMVDPALQGLYPSKSLSRFADAIALCVQSEPEFRPPMSEVVQLLVRLVQRANMTRMCGADGHSWRRDGESRDQEPW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g42626 | LOC_Os07g42626.3 | Chr07 | 25518210 | 25523184 | + | MSU_osa1r7 | ||
| CDS seq | ATGAATTCTCCATCCCAGCTGACGAATTGGGTGTCACAAAATGGAGACCCCTGTGGACAGTCCTGGCTTGGGATCACTTGCTCGGGTTCCAGGGTGACAGCAATAAAATTATCCGGCATGGGGATCAACGGGACTTTGGGCTACAACATGAATCTACTGACTTCACTAGTTGAACTTGATACGAGCAAGAATAATCTTGGAGGCAGTGACATTCCTTATAACCTTCCTCCAAATCTTGAGAGATTAAACCTTGCAGAAAACAACTTCACCGGAAGCATACCATACTCTATATCGCAAATGATTGCACTTAGAATTTTAAATCTTGGACATAATCATCTTGCAACCACCAATGATATGTTCAACCAGCTAACTAACCTAACAACATTGGACCTTTCATACAATACACTTTCGGGTAATATTCCACAAAGCTTCAATTCCTTGACAAATTTGAGAAAACTTAATCTGCAGAACAACGGATTCAATGGCACAATAGATGTCCTTGCTGATCTTCCGCTTACTGACTTAAATGTTGCAAATAACCAATTCACCGGATGGATACCTGATAAGCTAAAGAAAATAAAGAATCTCCAGACAAATGGAAACTCGTTTGGAAGTGGTCCTTCACCACCACCTCCACCATATCAATCTCCACCTTATAAATCTCCTCCATACAAATCTCCACAATCTCGACAACCTGCTCCTCCAACTACTACTGTTAACAATAATCCGTCTGATGATGGTCGCAAACACTCTAAACTAAGTGGTGGTGCCATAGCCGGAATTGTAGTATGTTTGGTAGTTGTGGGTGCAATAGTTGCCTTCTTTGTGATCAAGAAGAAATATTGGTCATTGCCACGAGGAGGAGATCCTGAACAGAAGGAACCTCTCAGCCCTATTGTTTCAGGATTTAAAGACAGTCTTAAACAGATGAAGTCAATCAAGATCATCTCAACAATTGGCAAGGAAGAATTACAGAAAACTGTTTCAATGAATTTAAAACCTCCAACAAGAATTGACTTGCACAAGTCCATTGATGAAAATGATGTCACCAGCAAGTCTTTCACAAGGAAAATAAGTTTTAGTTCCATCAGAACACCTGCATACACTGTGGCAGACCTACAGGTGGCAACAGGCAGCTTCTGTGCTGACAATTTAATTGGAGAGGGGTTATTCGGTCGTGTTTACAAGGCGAAATTCAATGACCACAAGGTCCTGGCTGTGAAGAAAATCAATTTCTCTGCATTCCCGGGCCATCCTTCAGATTTGTTCATTGAGTTAGTTGCAAATATTTCAAGGTTAAATCATCCAAGCCTTTCTGAGTTAGTTGGCTACTGTTCAGAGCATGGGCAGTGCTTACTGGCATATGAGTTCTACCGAAATGGTTCTCTTAAAGACTTGCTTCATCTAGTGGATGATCAAAGCCAACCGTTGTCTTGGAATAGCCGTGTGAAGATTGCCCTTGGATCTGCGAGGGCATTAGAATATCTACATGAAACTTGTTCACCTTCCGTGATACACAAGAATTTCAAGTCATCCAATATTTTTCTGGATAACGAGCTAAATCCCCATCTTTCAGATTCTGGGTTTGCTGACCTTATTCCTAACCGGGAATCTCAGGTGTCAGATGAGGACTCAGGATACAGGGCCCCTGAGGTGACCATGTCTGGCCAGTACTCCGTGAAGAGTGACGTGTACAGCTTCGGTGTTGTCATGCTAGAGCTCCTGACTGGCCGGAAACCTTTTGACAGATCCCGGCCACGGTCGGAGCAGTCACTGGTCGGGTGGGCAACTCCCCAGCTGCACGACATCGACGCTTTGGACCAGATGGTCGACCCTGCACTCCAGGGGCTGTACCCTTCGAAATCGCTCTCCCGCTTCGCTGACGCGATCGCGCTCTGCGTTCAGTCCGAACCGGAGTTCAGGCCGCCGATGTCGGAGGTCGTCCAGTTGCTGGTCCGCCTTGTGCAGAGAGCCAACATGACGAGGATGTGCGGCGCCGACGGTCACTCATGGCGGCGCGACGGCGAATCCCGGGACCAAGAACCATGGTAA
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| Protein seq | MNSPSQLTNWVSQNGDPCGQSWLGITCSGSRVTAIKLSGMGINGTLGYNMNLLTSLVELDTSKNNLGGSDIPYNLPPNLERLNLAENNFTGSIPYSISQMIALRILNLGHNHLATTNDMFNQLTNLTTLDLSYNTLSGNIPQSFNSLTNLRKLNLQNNGFNGTIDVLADLPLTDLNVANNQFTGWIPDKLKKIKNLQTNGNSFGSGPSPPPPPYQSPPYKSPPYKSPQSRQPAPPTTTVNNNPSDDGRKHSKLSGGAIAGIVVCLVVVGAIVAFFVIKKKYWSLPRGGDPEQKEPLSPIVSGFKDSLKQMKSIKIISTIGKEELQKTVSMNLKPPTRIDLHKSIDENDVTSKSFTRKISFSSIRTPAYTVADLQVATGSFCADNLIGEGLFGRVYKAKFNDHKVLAVKKINFSAFPGHPSDLFIELVANISRLNHPSLSELVGYCSEHGQCLLAYEFYRNGSLKDLLHLVDDQSQPLSWNSRVKIALGSARALEYLHETCSPSVIHKNFKSSNIFLDNELNPHLSDSGFADLIPNRESQVSDEDSGYRAPEVTMSGQYSVKSDVYSFGVVMLELLTGRKPFDRSRPRSEQSLVGWATPQLHDIDALDQMVDPALQGLYPSKSLSRFADAIALCVQSEPEFRPPMSEVVQLLVRLVQRANMTRMCGADGHSWRRDGESRDQEPW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.323769 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0618400 | RBH | 0.0 | 0.0 | 0.945336 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g27990 | RBH | 1.825642 | 0.908518 | 2.191742 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0618400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0023440 | RBH | 0.062574 | 9.610022 | 2.310321 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023500 | RBH | 0.025766 | 0.000000 | 0.359718 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0023360 | RBH | 0.0 | 4.753766 | 1.237726 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0023290 | RBH | 0.000000 | 0.058158 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0023390 | RBH | 4.591543 | 2.779434 | 1.105016 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0418100 | RBH | 1.697858 | 3.8116715 | 1.7867355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0023910 | RBH | 0.000000 | 0.184851 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0428600 | RBH | 1.399532 | 1.310599 | 3.7817865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023170 | RBH | 0.045929 | 0.078455 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0023320 | RBH | 0.0 | 1.187018 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023210 | RBH | 1.551350 | 11.241179 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0023420 | RBH | 0.121386 | 0.459814 | 0.163367 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0023170 | RBH | 0.037987 | 4.032367 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023130 | RBH | 0.103112 | 0.0 | 0.347024 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023130 | RBH | 0.000000 | 3.901871 | 0.526639 |
