Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g31530 | OGI:07053150 | 13/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:18713933-18716913 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATGTATGGCGCAAAATCTGAATGGCATCTATATTTTCCTTTACTAAGAAAGCTACTTGGGTGGCACTTAGTTGCTTTTGATGGAAAATTCTTCGATTGCGCTCAAGCCACACCTGCCACCAAGTTATAAAAAGTGCCCCTATCAGTTTTCTTCTTCTCCTTCCATAAGTTGAATGTATGATTGAGGTCCACCATTCTAAAATGTTTGCATCCTGTAGTTGATTTGGGGTCTGCATGATGTCCAGCCAGCTACAAACTTGGGACCAAACCGTGTTAGTGAAACTGCACTCCTTTGCCAAATGGTTTGCGTCCTCAAAAGCATCTGTACATAAGCTGCAAATCCAATCGCATGGCCAATGTCTTAAAAGGAGGTTTTCAGCTGTGAGAGTTCTTTGATGTAAAATTAACCAGCCAAAGAACCGATGCTTAGGTTCCGCTTCAGCTTTCCAAAGTGGCATAAAATTTGTGTTGGCAACTGATCCTACAAACTGCATTTCATAAGCGCTTTTTGCAGAGTATTCACCATGATTAGTCCACTTCCACGTGATACTATCCAAAGAATTGGGGTGTAATCTGATCTCATGCAGCTTACTGCCTAGGTGCACCAGCTCATTGATCTCATTTATTGAAGTGATTGTTCTTAAGGAAGTGATCCAGTGATTGTTGTGCAGCTCAAAGGCTACGCAGTTTGTTTTCCTCTTTGCTAATTTGAATAATGTCGGCGCTATGTCTTTAGGAGCGTATCCTTGCAGCCAATTGTCTGACCAAAACTTGCATTTCTTTCCGTTTCCTAGGGAAATTTGTGTACTTGCTCTGAAGAGATTTCTGTCCATCTCATCACATGGAATTTCCATATTGATCCAGGGTTTATTTTCCTCTTTCCATTCGTACCAGAGCCATCGAAGTCTTAAAGCCCGAGCGAATTTCTCTAAATTGAGAATTCCAAGCCCGCCCAAAGGTTTGGGCTTGCAGACGGCTGTCCAATTCAAAAGACAACTGCCCCCGCTAACGTTTTCAGGATCGCCGCCTTTCCAAAGGAAAGCTCGCCTAAGGCGATCGATCCTTTTGTAAAGCCATTTATTTTGCTGGAGAATTGTTAGGTGATAAATTGGGGTAGAGGAAAGAGTGTTTCTCTACCTGCCGAAGTGAAGAAGCGACCTTTCCAACCAGGAATTCTCGATCCCACTTTGTCCACCAGAGGTTGAAGCTCTAATTTCCCCAATTTTCTTGTGTGCAAAGGCAGGCCCAAGTATTTACATGGGAAGTTTGAAATTCTACCTGGGAAGATGGAAAGGCAGTCATCTAGGTTGACTCCGTTACAGCTTATCGGGAAGATCTCTGTTTTTTCCATGTTTGTGTGAAGTCCACTGGCATCTGCAAAGACAGAAAGAATTCCACGAAGGACTAGCATTTCTTCTCGAATGGGCTTTATAAAAAGACCAACATCATCTGCGTAGAGAGAACATCTGAAGCGCCGCTGTCTTTGCAGACTAGAGAGAAGGCCAAGATCCTCTGCTTTCTTGAATAATTTGTGCCGGGGTTCCATTGCAAGGATGAAAAGCATGGGGGAAAGGGGATCGCCCTGCTGAAGACCTCTAGCATGGTCTATTTCCTGACCTGGGATACCATTAAGAAGAACCGCAGAAGAGAAAGTACCCAGTAGGTTGGAAATCCAGTTGCACCATTTATGTCCAAAGCCAAAGATTTGAAGGACCTCTAGCAAGTATGCCCAATTAACTGTGTCGAAAGCCTTCGATATGTCAACTTTGAGGAAAAGAGTAGGCTTTTTTTTCCTGTGAAACGATTTGATCATGTTCTGCACAAACAGGACATTGTCATGCATTGCTCTTTTCCTAATGAATGCACTTTGACTTTGAGAAACTAGCTCATCTAATTTTGGTGTAAGTCTGTTTGCTAGTAATTTAGCTACTATTTTTGCAAAACTATGCATTAGACTTATTGGCCGGAAATCCTCCGCTTTTGTTGCATCCGCCTTTTTAGGGATGAGGCAGATATGTGCCGAATTGAGTTCTTGCAGTCTTGCACATCCCATATCTCCAAAGAAGGAAATAGCTTGAATGAGATCTGTTTTTATTATGTCCCATGCTTGTTTGAAAAAGGCTCCAATAAATCCATCTGGTCCAGGAGATTTTTCCAAAGGCAAGTCAGAGATTGTATTTTTGAGTTCTTCTTCAGTGAAGTTATCATCGAGATCTGAGAGATCAAGCGTAGGGAGATTGAGAGCAGCCAAGTTTAATCTCTGATTTCTGAGAGCAAAGGCTCCTAATTTTTGTGTGAAGTAACGCTTCAATTCTTCCTCCTTTTGATCTTTAGTTACAGCAAAGCCATCTGGAGTTTGAAGGATCTGTATGTGATTTTTTCTCTTTCTACCATTTGCTTTGATTTGGAAGAATTTAGAGTTAACGTCTCCATGCTTTAACCAAGTGATCCTGGCTCTTTGCCTTAGTCGTATTCTCAAGCTTAAAATTATAAGAAGCAGTTGATTAGTAGCCAGCTTCTGAGAATTTGGAAAAGCTTGGTTTCCTAGCTTTTGGCTTCTAGTTCATTTTCTGGATTCTACAACTTCTCAGAATCTGGACCAAAAGCTGAACTGTTTGGAGGAGCTTCTAATTCTGGAAGAAACTGCAGCAGCTAAAAGCTCCCCTGAACATATGCCCTTAAACTTGCTCTACAACACCTGGTGCCCACTCCAATGCATCCCCAACAGTTTACAGTTCTAAAGTAGCTAAGCATCCGCGTTGGCCCATGAGGCAACATGGGTTTGTTGACACGCGGTGTAAACGTTACGGGCTACGATCGTTACAGAGCTGGGCTGTTTGTTGGCGATCGTACTCTTTGCCCATCACGAAACTCACTATACTCCCGTAACCAGGCCCTTTTGCTCGCTGTAGTGCAATGTCTGTGGCATCGCCCCACTTATCTCATGAGCAGAGTTTTGTGTGCTCATTTCACTGCCCAT
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| CDS seq | ATGGGCAGTGAAATGAGCACACAAAACTCTGCTCATGAGATAAGTGGGGCGATGCCACAGACATTGCACTACAGCGAGCAAAAGGGCCTGGTTACGGGAGTATACTTGAGAATACGACTAAGGCAAAGAGCCAGGATCACTTGGTTAAAGCATGGAGACGTTAACTCTAAATTCTTCCAAATCAAAGCAAATGGTAGAAAGAGAAAAAATCACATACAGATCCTTCAAACTCCAGATGGCTTTGCTGTAACTAAAGATCAAAAGGAGGAAGAATTGAAGCGTTACTTCACACAAAAATTAGGAGCCTTTGCTCTCAGAAATCAGAGATTAAACTTGGCTGCTCTCAATCTCCCTACGCTTGATCTCTCAGATCTCGATGATAACTTCACTGAAGAAGAACTCAAAAATACAATCTCTGACTTGCCTTTGGAAAAATCTCCTGGACCAGATGGATTTATTGGAGCCTTTTTCAAACAAGCATGGGACATAATAAAAACAGATCTCATTCAAGCTATTTCCTTCTTTGGAGATATGGGATGTGCAAGACTGCAAGAACTCAATTCGGCACATATCTGCCTCATCCCTAAAAAGGCGGATGCAACAAAAGCGGAGGATTTCCGGCCAATAAGTCTAATGCATAGTTTTGCAAAAATAGTAGCTAAATTACTAGCAAACAGACTTACACCAAAATTAGATGAGCTAGTTTCTCAAAGTCAAAGTGCATTCATTAGGAAAAGAGCAATGCATGACAATGTCCTGTTTGTGCAGAACATGATCAAATCGTTTCACAGGAAAAAAAAGCCTACTCTTTTCCTCAAAGTTGACATATCGAAGGCTTTCGACACAGTTAATTGGGCATACTTGCTAGAGGTCCTTCAAATCTTTGGCTTTGGACATAAATGGTGCAACTGGATTTCCAACCTACTGGGTACTTTCTCTTCTGCGGTTCTTCTTAATGGTATCCCAGATGCCAGTGGACTTCACACAAACATGGAAAAAACAGAGATCTTCCCGATAAGCTGTAACGGAGTCAACCTAGATGACTGCCTTTCCATCTTCCCAGCCGTCTGCAAGCCCAAACCTTTGGGCGGGCTTGGAATTCTCAATTTAGAGAAATTCGCTCGGGCTTTAAGACTTCGATGGCTCTGGTACGAATGGAAAGAGGAAAATAAACCCTGGATCAATATGGAAATTCCATGTGATGAGATGGACAGAAATCTCTTCAGAGCAAGTACACAAATTTCCCTAGGAAACGGAAAGAAATGCAAGTTTTGGTCAGACAATTGGCTGCAAGGATACGCTCCTAAAGACATAGCGCCGACATTATTCAAATTAGCAAAGAGGAAAACAAACTGCGTAGCCTTTGAGCTGCACAACAATCACTGGATCACTTCCTTAAGAACAATCACTTCAATAAATGAGATCAATGAGCTGGTGCACCTAGGCAGTAAGCTGCATGAGATCAGATTACACCCCAATTCTTTGGATAGTATCACGTGGAAGTGGACTAATCATGGTGAATACTCTGCAAAAAGCGCTTATGAAATGCAGTTTGTAGGATCAGTTGCCAACACAAATTTTATGCCACTTTGGAAAGCTGAAGCGGAACCTAAGCATCGGTTCTTTGGCTGGTTAATTTTACATCAAAGAACTCTCACAGCTGAAAACCTCCTTTTAAGACATTGGCCATGCGATTGGATTTGCAGCTTATGTACAGATGCTTTTGAGGACGCAAACCATTTGGCAAAGGAGTGCAGTTTCACTAACACGGTTTGGTCCCAAGTTTGTAGCTGGCTGGACATCATGCAGACCCCAAATCAACTACAGGATGCAAACATTTTAGAATGGTGGACCTCAATCATACATTCAACTTATGGAAGGAGAAGAAGAAAACTGATAGGGGCACTTTTTATAACTTGGTGGCAGGTGTGGCTTGAGCGCAATCGAAGAATTTTCCATCAAAAGCAACTAAGTGCCACCCAAGTAGCTTTCTTAGTAAAGGAAAATATAGATGCCATTCAGATTTTGCGCCATACATAA
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| Protein seq | MGSEMSTQNSAHEISGAMPQTLHYSEQKGLVTGVYLRIRLRQRARITWLKHGDVNSKFFQIKANGRKRKNHIQILQTPDGFAVTKDQKEEELKRYFTQKLGAFALRNQRLNLAALNLPTLDLSDLDDNFTEEELKNTISDLPLEKSPGPDGFIGAFFKQAWDIIKTDLIQAISFFGDMGCARLQELNSAHICLIPKKADATKAEDFRPISLMHSFAKIVAKLLANRLTPKLDELVSQSQSAFIRKRAMHDNVLFVQNMIKSFHRKKKPTLFLKVDISKAFDTVNWAYLLEVLQIFGFGHKWCNWISNLLGTFSSAVLLNGIPDASGLHTNMEKTEIFPISCNGVNLDDCLSIFPAVCKPKPLGGLGILNLEKFARALRLRWLWYEWKEENKPWINMEIPCDEMDRNLFRASTQISLGNGKKCKFWSDNWLQGYAPKDIAPTLFKLAKRKTNCVAFELHNNHWITSLRTITSINEINELVHLGSKLHEIRLHPNSLDSITWKWTNHGEYSAKSAYEMQFVGSVANTNFMPLWKAEAEPKHRFFGWLILHQRTLTAENLLLRHWPCDWICSLCTDAFEDANHLAKECSFTNTVWSQVCSWLDIMQTPNQLQDANILEWWTSIIHSTYGRRRRKLIGALFITWWQVWLERNRRIFHQKQLSATQVAFLVKENIDAIQILRHT |
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| Function | LINE-1 retrotransposable element ORF2 protein [UniProtKB/Swiss-Prot:O00370] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g31530 | LOC_Os07g31530.1 | Chr07 | 18713933 | 18716913 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGCAGTGAAATGAGCACACAAAACTCTGCTCATGAGATAAGTGGGGCGATGCCACAGACATTGCACTACAGCGAGCAAAAGGGCCTGGTTACGGGAGTATACTTGAGAATACGACTAAGGCAAAGAGCCAGGATCACTTGGTTAAAGCATGGAGACGTTAACTCTAAATTCTTCCAAATCAAAGCAAATGGTAGAAAGAGAAAAAATCACATACAGATCCTTCAAACTCCAGATGGCTTTGCTGTAACTAAAGATCAAAAGGAGGAAGAATTGAAGCGTTACTTCACACAAAAATTAGGAGCCTTTGCTCTCAGAAATCAGAGATTAAACTTGGCTGCTCTCAATCTCCCTACGCTTGATCTCTCAGATCTCGATGATAACTTCACTGAAGAAGAACTCAAAAATACAATCTCTGACTTGCCTTTGGAAAAATCTCCTGGACCAGATGGATTTATTGGAGCCTTTTTCAAACAAGCATGGGACATAATAAAAACAGATCTCATTCAAGCTATTTCCTTCTTTGGAGATATGGGATGTGCAAGACTGCAAGAACTCAATTCGGCACATATCTGCCTCATCCCTAAAAAGGCGGATGCAACAAAAGCGGAGGATTTCCGGCCAATAAGTCTAATGCATAGTTTTGCAAAAATAGTAGCTAAATTACTAGCAAACAGACTTACACCAAAATTAGATGAGCTAGTTTCTCAAAGTCAAAGTGCATTCATTAGGAAAAGAGCAATGCATGACAATGTCCTGTTTGTGCAGAACATGATCAAATCGTTTCACAGGAAAAAAAAGCCTACTCTTTTCCTCAAAGTTGACATATCGAAGGCTTTCGACACAGTTAATTGGGCATACTTGCTAGAGGTCCTTCAAATCTTTGGCTTTGGACATAAATGGTGCAACTGGATTTCCAACCTACTGGGTACTTTCTCTTCTGCGGTTCTTCTTAATGGTATCCCAGATGCCAGTGGACTTCACACAAACATGGAAAAAACAGAGATCTTCCCGATAAGCTGTAACGGAGTCAACCTAGATGACTGCCTTTCCATCTTCCCAGCCGTCTGCAAGCCCAAACCTTTGGGCGGGCTTGGAATTCTCAATTTAGAGAAATTCGCTCGGGCTTTAAGACTTCGATGGCTCTGGTACGAATGGAAAGAGGAAAATAAACCCTGGATCAATATGGAAATTCCATGTGATGAGATGGACAGAAATCTCTTCAGAGCAAGTACACAAATTTCCCTAGGAAACGGAAAGAAATGCAAGTTTTGGTCAGACAATTGGCTGCAAGGATACGCTCCTAAAGACATAGCGCCGACATTATTCAAATTAGCAAAGAGGAAAACAAACTGCGTAGCCTTTGAGCTGCACAACAATCACTGGATCACTTCCTTAAGAACAATCACTTCAATAAATGAGATCAATGAGCTGGTGCACCTAGGCAGTAAGCTGCATGAGATCAGATTACACCCCAATTCTTTGGATAGTATCACGTGGAAGTGGACTAATCATGGTGAATACTCTGCAAAAAGCGCTTATGAAATGCAGTTTGTAGGATCAGTTGCCAACACAAATTTTATGCCACTTTGGAAAGCTGAAGCGGAACCTAAGCATCGGTTCTTTGGCTGGTTAATTTTACATCAAAGAACTCTCACAGCTGAAAACCTCCTTTTAAGACATTGGCCATGCGATTGGATTTGCAGCTTATGTACAGATGCTTTTGAGGACGCAAACCATTTGGCAAAGGAGTGCAGTTTCACTAACACGGTTTGGTCCCAAGTTTGTAGCTGGCTGGACATCATGCAGACCCCAAATCAACTACAGGATGCAAACATTTTAGAATGGTGGACCTCAATCATACATTCAACTTATGGAAGGAGAAGAAGAAAACTGATAGGGGCACTTTTTATAACTTGGTGGCAGGTGTGGCTTGAGCGCAATCGAAGAATTTTCCATCAAAAGCAACTAAGTGCCACCCAAGTAGCTTTCTTAGTAAAGGAAAATATAGATGCCATTCAGATTTTGCGCCATACATAA
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| Protein seq | MGSEMSTQNSAHEISGAMPQTLHYSEQKGLVTGVYLRIRLRQRARITWLKHGDVNSKFFQIKANGRKRKNHIQILQTPDGFAVTKDQKEEELKRYFTQKLGAFALRNQRLNLAALNLPTLDLSDLDDNFTEEELKNTISDLPLEKSPGPDGFIGAFFKQAWDIIKTDLIQAISFFGDMGCARLQELNSAHICLIPKKADATKAEDFRPISLMHSFAKIVAKLLANRLTPKLDELVSQSQSAFIRKRAMHDNVLFVQNMIKSFHRKKKPTLFLKVDISKAFDTVNWAYLLEVLQIFGFGHKWCNWISNLLGTFSSAVLLNGIPDASGLHTNMEKTEIFPISCNGVNLDDCLSIFPAVCKPKPLGGLGILNLEKFARALRLRWLWYEWKEENKPWINMEIPCDEMDRNLFRASTQISLGNGKKCKFWSDNWLQGYAPKDIAPTLFKLAKRKTNCVAFELHNNHWITSLRTITSINEINELVHLGSKLHEIRLHPNSLDSITWKWTNHGEYSAKSAYEMQFVGSVANTNFMPLWKAEAEPKHRFFGWLILHQRTLTAENLLLRHWPCDWICSLCTDAFEDANHLAKECSFTNTVWSQVCSWLDIMQTPNQLQDANILEWWTSIIHSTYGRRRRKLIGALFITWWQVWLERNRRIFHQKQLSATQVAFLVKENIDAIQILRHT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0017620 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0017520 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017380 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0017490 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0311400 | RBH | 0.017044 | 0.213461 | 0.1712685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0017990 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0435100 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017220 | RBH | 0.0 | 0.247276 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017380 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0017640 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017420 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017370 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
