Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g22498 | OGI:09054930 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:12660622-12660867 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCACATTCCGTAAAAATTTATGATACATGTATAGGATGCACTCAATGTGTACGAGCTTGTCCAACAGATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCCAAGCAAATTGCTTCCGCGCCAAGAACCGAAGATTGTGTGGGTTGTAAGAGATGCGAATCCGCCTGCCCAACAGATTTTTTAAGTGTCCGCGTTTATTTAGGACCTGAGACAACCCGCAGCATGGCTCTATCTTATTGA |
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| CDS seq | ATGTCACATTCCGTAAAAATTTATGATACATGTATAGGATGCACTCAATGTGTACGAGCTTGTCCAACAGATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCCAAGCAAATTGCTTCCGCGCCAAGAACCGAAGATTGTGTGGGTTGTAAGAGATGCGAATCCGCCTGCCCAACAGATTTTTTAAGTGTCCGCGTTTATTTAGGACCTGAGACAACCCGCAGCATGGCTCTATCTTATTGA |
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| Protein seq | MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY |
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| Function | Photosystem I iron-sulfur center [UniProtKB/Swiss-Prot:P69415] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g22498 | LOC_Os07g22498.1 | Chr07 | 12660622 | 12660867 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCACATTCCGTAAAAATTTATGATACATGTATAGGATGCACTCAATGTGTACGAGCTTGTCCAACAGATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCCAAGCAAATTGCTTCCGCGCCAAGAACCGAAGATTGTGTGGGTTGTAAGAGATGCGAATCCGCCTGCCCAACAGATTTTTTAAGTGTCCGCGTTTATTTAGGACCTGAGACAACCCGCAGCATGGCTCTATCTTATTGA
More
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| Protein seq | MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 177.751923 | 197.960052 | 80.168938 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0485201 | SBH | 0.0 | 0.086725 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g46436 | RBH | 193.194077 | 209.189590 | 82.053215 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0485201 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003610 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026130 | SBH | 280.965271 | 12.057311 | 344.592346 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0011350 | RBH | 1438.134644 | 47.039902 | 774.737976 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003810 | SBH | 193.841736 | 1.761121 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003580 | SBH | 12091.941406 | 305.554291 | 4942.904297 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009940 | SBH | 75.491302 | 0.000000 | 23.295317 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0066470 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009970 | SBH | 862.093262 | 37.976284 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G026100 | SBH | 149.050613 | 7.428656 | 119.538597 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004720 | SBH | 1672.676392 | 213.210938 | 2001.084351 |
