Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g18230 | OGI:07004740 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:10805142-10807392 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAACTAATGAAGTGAGGCAGCTTTCTAGCCAATCTTAACAAAAACAAACAGTAAATACACTTCGTTTTTTCATAAGAAGTTCTAGAAAAAGAAACGTGAAAACATTTTACATAGCATTTGTTGCTATTTTTATGTCACTACAAACTGTTCTCCGGTTTACAGATTTCTGGTTGAGAAAAATGTACATGTATATCCTAATATGATTTTCTGATGTTCTTAGTTCTGCATAGCTTCTAGTATATCATCTTCCCCCTGACAGTTCAGAGAATGTGCCAATACTCGTAAACTGTGGGCATAACATGTCTGGTGATTCAAATCCTTTGCTCTGCATCAAAGCCTGCATAGTAAAGCTAAAATGCCTTGATGAAATCTCTGGTATTGGTGTATCACCTTCAAGGTACTCCATGACTTGCTGCATGCTAGGTCTTGCATTAGTAAATGGGTGTGAGCATAGAAGACCTAGCTTTAGGACAAGACAAACCTCATCGATATTAAAATCAGCTTGGAGTCTACTGTCCATGGCCTCGATTAGTGAGCTATTATGCAGAAACTGAAGAACCCAATCGAACAAACTATGCTGGTTTCCCTGTGAGTCTTTCTTAATAGGTCTTTGCCCACAGGTGACCTCAAGAAGAAATATGCCAAATGCAAAGACATCTGTAGAAGTGGATGCTCTCCCTGTGCGTACCAATTCTGGAGCTAAGTACCCCATGGTTCCAACCATGTGAGTGGTTTGTGGATCAGTCCCATGGTCATATAACCTTGAAAGACCAAAGTCACCTAATTTTCCATTCATTTCACTATCTAGAAGAACATTACTTGGTTTAATATCTCGGTGTATGACAACCTTTTCCCACTTCTCATGGAGATAGAGCAAGCCAAATGCGACACCCTTGATGACATGAAACCTCTCAGCCCAATTCAATGATGGTTTTCCATCTTCAGGATACAAATACTTATTAAGGCTGCCATTTGACATATAGTCATATACTAGAAGGAGTTGACCTTTTCGCCGACAATAACCAAGTAGAGGCACTAGGTTGCGGTGTCTGAGCTTACCAATACTGACAACCTCAGCAATGAACTTTTTCATCCCTTGTGTAGACTCGTGGGACACCCTCTTAATAGCTACTGGAACTTTAGACTTCTGAAGAACGCCTTTATAAACTTTGCCAAACCCACCTACTCCTAGTAAGTTATTTTTATTAAACCCTTCCGTAGCATGGTACATGTCTTTGAAGGAGAATCGATGTGGCCCAAAATCAACCTCCCAATCTTCCTGTAGCTCCATATATCTCAATCTTCTACGAACAAGTAAAACAACAACGGTACCAGCAGCAAGGACAAATATTGCTGTGGCTATAGGCAGGGTGATATCTAAGGTCTTGGAACGAGGCTTTGGGCCAAGGCGTGGTAGCTTTGGGAGTCTGGAGATGTCTATAGCTGGAGCAGGACTATTCATAGCAAAACTCCAGCCAAGTACGCAATGTCTTGTGCTAATCGCACCTGTTGTGGCTGAGAAACCGATGTATGATTGATCTCTAAGAACATCTGAGAAGTTATAGGAAGATGAAAGCAGTGGTCTTACAGATTTGGGTGCTCCAAGATGAGCCAAGGTAACGTTGATTTGTGCAGACTCTCCATCATAGTCAGCCCATACCTGCATGGCCTTGCCACTGATCAGAGTCAAGTTGTTGAAGAAACCACTCTTATCATCATAGTATCCAGTGTGGTGAGCTTGCAAAGAGATGAGGCTGTTGATGTTGATTCCAACGTGGTTGTTGTCGATGTCTTTGAACTCATCATTTTGGGTAGTATCAAGCTCGACCGCGAACATGTGATTGCTTCTGTTGCCATCGTTCCTACTATTGAGGAGACCTATATACTGTGCCCATGTATTGGAAAGGTTCTTGCTTGGAGCAACAAAGAAGGCCATGCCATCTGCACTTATATCATCATGCACTGAGAGGATTGCAAACACAAAGCTGAGTGAGAATGATTGCACTGTGCTGTTGGAAAATTTACGGAAGTTTTGTGGAGTTGGATAAAATGCGTGTCCTAGATTAATTGTGTCATTGGTGAGCTCAAGGATGCCGTCTGGTGTGACCATGGCATTTCCATCAAGGGTGAGGTTAACACCAGAAAAGCCATGGTAGACGAACTCGCCATGGCTAGTTGTGAAAGCTTCAAGGATAAGAACAAGGGAGAGGATGGTGCATAGGAGGGAGGACATGGGCTTTGTCCAAGACAT
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| CDS seq | ATGTCTTGGACAAAGCCCATGTCCTCCCTCCTATGCACCATCCTCTCCCTTGTTCTTATCCTTGAAGCTTTCACAACTAGCCATGGCGAGTTCGTCTACCATGGCTTTTCTGGTGTTAACCTCACCCTTGATGGAAATGCCATGGTCACACCAGACGGCATCCTTGAGCTCACCAATGACACAATTAATCTAGGACACGCATTTTATCCAACTCCACAAAACTTCCGTAAATTTTCCAACAGCACAGTGCAATCATTCTCACTCAGCTTTGTGTTTGCAATCCTCTCAGTGCATGATGATATAAGTGCAGATGGCATGGCCTTCTTTGTTGCTCCAAGCAAGAACCTTTCCAATACATGGGCACAGTATATAGGTCTCCTCAATAGTAGGAACGATGGCAACAGAAGCAATCACATGTTCGCGGTCGAGCTTGATACTACCCAAAATGATGAGTTCAAAGACATCGACAACAACCACGTTGGAATCAACATCAACAGCCTCATCTCTTTGCAAGCTCACCACACTGGATACTATGATGATAAGAGTGGTTTCTTCAACAACTTGACTCTGATCAGTGGCAAGGCCATGCAGGTATGGGCTGACTATGATGGAGAGTCTGCACAAATCAACGTTACCTTGGCTCATCTTGGAGCACCCAAATCTGTAAGACCACTGCTTTCATCTTCCTATAACTTCTCAGATGTTCTTAGAGATCAATCATACATCGGTTTCTCAGCCACAACAGGTGCGATTAGCACAAGACATTGCGTACTTGGCTGGAGTTTTGCTATGAATAGTCCTGCTCCAGCTATAGACATCTCCAGACTCCCAAAGCTACCACGCCTTGGCCCAAAGCCTCGTTCCAAGACCTTAGATATCACCCTGCCTATAGCCACAGCAATATTTGTCCTTGCTGCTGGTACCGTTGTTGTTTTACTTGTTCGTAGAAGATTGAGATATATGGAGCTACAGGAAGATTGGGAGGTTGATTTTGGGCCACATCGATTCTCCTTCAAAGACATGTACCATGCTACGGAAGGGTTTAATAAAAATAACTTACTAGGAGTAGGTGGGTTTGGCAAAGTTTATAAAGGCGTTCTTCAGAAGTCTAAAGTTCCAGTAGCTATTAAGAGGGTGTCCCACGAGTCTACACAAGGGATGAAAAAGTTCATTGCTGAGGTTGTCAGTATTGGTAAGCTCAGACACCGCAACCTAGTGCCTCTACTTGGTTATTGTCGGCGAAAAGGTCAACTCCTTCTAGTATATGACTATATGTCAAATGGCAGCCTTAATAAGTATTTGTATCCTGAAGATGGAAAACCATCATTGAATTGGGCTGAGAGGTTTCATGTCATCAAGGGTGTCGCATTTGGCTTGCTCTATCTCCATGAGAAGTGGGAAAAGGTTGTCATACACCGAGATATTAAACCAAGTAATGTTCTTCTAGATAGTGAAATGAATGGAAAATTAGGTGACTTTGGTCTTTCAAGGTTATATGACCATGGGACTGATCCACAAACCACTCACATGGTTGGAACCATGGGGTACTTAGCTCCAGAATTGGTACGCACAGGGAGAGCATCCACTTCTACAGATGTCTTTGCATTTGGCATATTTCTTCTTGAGGTCACCTGTGGGCAAAGACCTATTAAGAAAGACTCACAGGGAAACCAGCATAGTTTGTTCGATTGGGTTCTTCAGTTTCTGCATAATAGCTCACTAATCGAGGCCATGGACAGTAGACTCCAAGCTGATTTTAATATCGATGAGGTTTGTCTTGTCCTAAAGCTAGGTCTTCTATGCTCACACCCATTTACTAATGCAAGACCTAGCATGCAGCAAGTCATGGAGTACCTTGAAGGTGATACACCAATACCAGAGATTTCATCAAGGCATTTTAGCTTTACTATGCAGGCTTTGATGCAGAGCAAAGGATTTGAATCACCAGACATGTTATGCCCACAGTTTACGAGTATTGGCACATTCTCTGAACTGTCAGGGGGAAGATGA
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| Protein seq | MSWTKPMSSLLCTILSLVLILEAFTTSHGEFVYHGFSGVNLTLDGNAMVTPDGILELTNDTINLGHAFYPTPQNFRKFSNSTVQSFSLSFVFAILSVHDDISADGMAFFVAPSKNLSNTWAQYIGLLNSRNDGNRSNHMFAVELDTTQNDEFKDIDNNHVGININSLISLQAHHTGYYDDKSGFFNNLTLISGKAMQVWADYDGESAQINVTLAHLGAPKSVRPLLSSSYNFSDVLRDQSYIGFSATTGAISTRHCVLGWSFAMNSPAPAIDISRLPKLPRLGPKPRSKTLDITLPIATAIFVLAAGTVVVLLVRRRLRYMELQEDWEVDFGPHRFSFKDMYHATEGFNKNNLLGVGGFGKVYKGVLQKSKVPVAIKRVSHESTQGMKKFIAEVVSIGKLRHRNLVPLLGYCRRKGQLLLVYDYMSNGSLNKYLYPEDGKPSLNWAERFHVIKGVAFGLLYLHEKWEKVVIHRDIKPSNVLLDSEMNGKLGDFGLSRLYDHGTDPQTTHMVGTMGYLAPELVRTGRASTSTDVFAFGIFLLEVTCGQRPIKKDSQGNQHSLFDWVLQFLHNSSLIEAMDSRLQADFNIDEVCLVLKLGLLCSHPFTNARPSMQQVMEYLEGDTPIPEISSRHFSFTMQALMQSKGFESPDMLCPQFTSIGTFSELSGGR |
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| Function | L-type lectin-domain containing receptor kinase SIT2 [UniProtKB/Swiss-Prot:Q7XUN6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g18230 | LOC_Os07g18230.1 | Chr07 | 10805142 | 10807392 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCTTGGACAAAGCCCATGTCCTCCCTCCTATGCACCATCCTCTCCCTTGTTCTTATCCTTGAAGCTTTCACAACTAGCCATGGCGAGTTCGTCTACCATGGCTTTTCTGGTGTTAACCTCACCCTTGATGGAAATGCCATGGTCACACCAGACGGCATCCTTGAGCTCACCAATGACACAATTAATCTAGGACACGCATTTTATCCAACTCCACAAAACTTCCGTAAATTTTCCAACAGCACAGTGCAATCATTCTCACTCAGCTTTGTGTTTGCAATCCTCTCAGTGCATGATGATATAAGTGCAGATGGCATGGCCTTCTTTGTTGCTCCAAGCAAGAACCTTTCCAATACATGGGCACAGTATATAGGTCTCCTCAATAGTAGGAACGATGGCAACAGAAGCAATCACATGTTCGCGGTCGAGCTTGATACTACCCAAAATGATGAGTTCAAAGACATCGACAACAACCACGTTGGAATCAACATCAACAGCCTCATCTCTTTGCAAGCTCACCACACTGGATACTATGATGATAAGAGTGGTTTCTTCAACAACTTGACTCTGATCAGTGGCAAGGCCATGCAGGTATGGGCTGACTATGATGGAGAGTCTGCACAAATCAACGTTACCTTGGCTCATCTTGGAGCACCCAAATCTGTAAGACCACTGCTTTCATCTTCCTATAACTTCTCAGATGTTCTTAGAGATCAATCATACATCGGTTTCTCAGCCACAACAGGTGCGATTAGCACAAGACATTGCGTACTTGGCTGGAGTTTTGCTATGAATAGTCCTGCTCCAGCTATAGACATCTCCAGACTCCCAAAGCTACCACGCCTTGGCCCAAAGCCTCGTTCCAAGACCTTAGATATCACCCTGCCTATAGCCACAGCAATATTTGTCCTTGCTGCTGGTACCGTTGTTGTTTTACTTGTTCGTAGAAGATTGAGATATATGGAGCTACAGGAAGATTGGGAGGTTGATTTTGGGCCACATCGATTCTCCTTCAAAGACATGTACCATGCTACGGAAGGGTTTAATAAAAATAACTTACTAGGAGTAGGTGGGTTTGGCAAAGTTTATAAAGGCGTTCTTCAGAAGTCTAAAGTTCCAGTAGCTATTAAGAGGGTGTCCCACGAGTCTACACAAGGGATGAAAAAGTTCATTGCTGAGGTTGTCAGTATTGGTAAGCTCAGACACCGCAACCTAGTGCCTCTACTTGGTTATTGTCGGCGAAAAGGTCAACTCCTTCTAGTATATGACTATATGTCAAATGGCAGCCTTAATAAGTATTTGTATCCTGAAGATGGAAAACCATCATTGAATTGGGCTGAGAGGTTTCATGTCATCAAGGGTGTCGCATTTGGCTTGCTCTATCTCCATGAGAAGTGGGAAAAGGTTGTCATACACCGAGATATTAAACCAAGTAATGTTCTTCTAGATAGTGAAATGAATGGAAAATTAGGTGACTTTGGTCTTTCAAGGTTATATGACCATGGGACTGATCCACAAACCACTCACATGGTTGGAACCATGGGGTACTTAGCTCCAGAATTGGTACGCACAGGGAGAGCATCCACTTCTACAGATGTCTTTGCATTTGGCATATTTCTTCTTGAGGTCACCTGTGGGCAAAGACCTATTAAGAAAGACTCACAGGGAAACCAGCATAGTTTGTTCGATTGGGTTCTTCAGTTTCTGCATAATAGCTCACTAATCGAGGCCATGGACAGTAGACTCCAAGCTGATTTTAATATCGATGAGGTTTGTCTTGTCCTAAAGCTAGGTCTTCTATGCTCACACCCATTTACTAATGCAAGACCTAGCATGCAGCAAGTCATGGAGTACCTTGAAGGTGATACACCAATACCAGAGATTTCATCAAGGCATTTTAGCTTTACTATGCAGGCTTTGATGCAGAGCAAAGGATTTGAATCACCAGACATGTTATGCCCACAGTTTACGAGTATTGGCACATTCTCTGAACTGTCAGGGGGAAGATGA
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| Protein seq | MSWTKPMSSLLCTILSLVLILEAFTTSHGEFVYHGFSGVNLTLDGNAMVTPDGILELTNDTINLGHAFYPTPQNFRKFSNSTVQSFSLSFVFAILSVHDDISADGMAFFVAPSKNLSNTWAQYIGLLNSRNDGNRSNHMFAVELDTTQNDEFKDIDNNHVGININSLISLQAHHTGYYDDKSGFFNNLTLISGKAMQVWADYDGESAQINVTLAHLGAPKSVRPLLSSSYNFSDVLRDQSYIGFSATTGAISTRHCVLGWSFAMNSPAPAIDISRLPKLPRLGPKPRSKTLDITLPIATAIFVLAAGTVVVLLVRRRLRYMELQEDWEVDFGPHRFSFKDMYHATEGFNKNNLLGVGGFGKVYKGVLQKSKVPVAIKRVSHESTQGMKKFIAEVVSIGKLRHRNLVPLLGYCRRKGQLLLVYDYMSNGSLNKYLYPEDGKPSLNWAERFHVIKGVAFGLLYLHEKWEKVVIHRDIKPSNVLLDSEMNGKLGDFGLSRLYDHGTDPQTTHMVGTMGYLAPELVRTGRASTSTDVFAFGIFLLEVTCGQRPIKKDSQGNQHSLFDWVLQFLHNSSLIEAMDSRLQADFNIDEVCLVLKLGLLCSHPFTNARPSMQQVMEYLEGDTPIPEISSRHFSFTMQALMQSKGFESPDMLCPQFTSIGTFSELSGGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.650888 | 0.659422 | 0.532131 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0283050 | RBH | 0.952421 | 1.024886 | 2.252278 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g24630 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0283050 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0010470 | RBH | 0.250787 | 0.0 | 0.250512 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0010470 | RBH | 0.116940 | 0.0 | 2.600052 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0010430 | SBH | 2.233815 | 0.0 | 7.144199 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0001790 | SBH | 0.008926 | 0.007383 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0010410 | RBH | 6.252750 | 0.0 | 6.557066 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0190600 | SBH | 2.032993 | 0.34252 | 0.021405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0010870 | SBH | 0.889044 | 0.0 | 0.436675 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0191100 | RBH | 1.8752525 | 0.110067 | 0.0153285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0010340 | SBH | 1.193230 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0010410 | SBH | 0.805792 | 0.689577 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0010350 | RBH | 3.378243 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0009660 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0001830 | SBH | 0.020082 | 0.236248 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G010410 | SBH | 0.626682 | 0.0 | 0.976921 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0010170 | RBH | 0.0 | 0.0 | 0.459822 |
