Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g03279 | OGI:07004070 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:1319031-1319803 | ||||||||
| Gene Symbol | PR1-71, OsPR1#071, OsPR1-71 | ||||||||||
| DNA seq | AATATCGCATCAGCATTCAACGAACACACACACAATCGGAATCGATTAAGAGAGCAAATTGTGTAGTAGTGTTGCATATGGAGACACCAAAGATATCGGGAGTAGCACTTGCGGCAGCCATTGCCGTCGTTCTGGCCATGGCGACCACGCCGGCGGTGGCGCAGAACTCGCCGCAGGACTTCGTGGACCTCCACAACGCGGCGCGACGCGTGGAGGGCGTCGGCGAGGTGGTCTGGGACGACGCCGTGGCGGCGTACGCGGAGAACTACGCGGCGGAGCGCGCCGGCGACTGCGCGCTCATCCACTCCGGCAGCTGGGAGAAGGCCGGCTACGGCGAGAACCTCTTCGGAGGCTCCGGCAGCGAGTGGACGGCAGCGGACGCCGTCAACAGCTGGGTGGGGGAGAAGGATCTGTACGACTACGACAGCAACAGCTGCCTGGGGTCGTGGGACTCGTGCCTCCACTACACGCAGGTGATGTGGAGCCGCACGACGGCGATCGGCTGCGCCCGCGTGGACTGCGACAACGGCGGCGTCTTCATCACCTGCAACTACAACCCCGCCGGCAACTTCCAGGGAGAGCGCCCCTTCGAGCGTGGCCTCACTCTCTCTGCTTAATAAGTTATTAATACAGTATTTACTTTAACTATGTATGGAGTATGATATAAATGTGCGAAATAATAATTACGGGGATCTTATTATATATATATGTACGTTGTCGTTCGAATAAAAGAAGAAAATAAATGAGAAAATTAATTCCATTGTCTGCATGTA
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| CDS seq | ATGGAGACACCAAAGATATCGGGAGTAGCACTTGCGGCAGCCATTGCCGTCGTTCTGGCCATGGCGACCACGCCGGCGGTGGCGCAGAACTCGCCGCAGGACTTCGTGGACCTCCACAACGCGGCGCGACGCGTGGAGGGCGTCGGCGAGGTGGTCTGGGACGACGCCGTGGCGGCGTACGCGGAGAACTACGCGGCGGAGCGCGCCGGCGACTGCGCGCTCATCCACTCCGGCAGCTGGGAGAAGGCCGGCTACGGCGAGAACCTCTTCGGAGGCTCCGGCAGCGAGTGGACGGCAGCGGACGCCGTCAACAGCTGGGTGGGGGAGAAGGATCTGTACGACTACGACAGCAACAGCTGCCTGGGGTCGTGGGACTCGTGCCTCCACTACACGCAGGTGATGTGGAGCCGCACGACGGCGATCGGCTGCGCCCGCGTGGACTGCGACAACGGCGGCGTCTTCATCACCTGCAACTACAACCCCGCCGGCAACTTCCAGGGAGAGCGCCCCTTCGAGCGTGGCCTCACTCTCTCTGCTTAA
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| Protein seq | METPKISGVALAAAIAVVLAMATTPAVAQNSPQDFVDLHNAARRVEGVGEVVWDDAVAAYAENYAAERAGDCALIHSGSWEKAGYGENLFGGSGSEWTAADAVNSWVGEKDLYDYDSNSCLGSWDSCLHYTQVMWSRTTAIGCARVDCDNGGVFITCNYNPAGNFQGERPFERGLTLSA |
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| Function | Pathogenesis-related protein 1 [UniProtKB/Swiss-Prot:Q05968] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g03279 | LOC_Os07g03279.1 | Chr07 | 1319031 | 1319803 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGACACCAAAGATATCGGGAGTAGCACTTGCGGCAGCCATTGCCGTCGTTCTGGCCATGGCGACCACGCCGGCGGTGGCGCAGAACTCGCCGCAGGACTTCGTGGACCTCCACAACGCGGCGCGACGCGTGGAGGGCGTCGGCGAGGTGGTCTGGGACGACGCCGTGGCGGCGTACGCGGAGAACTACGCGGCGGAGCGCGCCGGCGACTGCGCGCTCATCCACTCCGGCAGCTGGGAGAAGGCCGGCTACGGCGAGAACCTCTTCGGAGGCTCCGGCAGCGAGTGGACGGCAGCGGACGCCGTCAACAGCTGGGTGGGGGAGAAGGATCTGTACGACTACGACAGCAACAGCTGCCTGGGGTCGTGGGACTCGTGCCTCCACTACACGCAGGTGATGTGGAGCCGCACGACGGCGATCGGCTGCGCCCGCGTGGACTGCGACAACGGCGGCGTCTTCATCACCTGCAACTACAACCCCGCCGGCAACTTCCAGGGAGAGCGCCCCTTCGAGCGTGGCCTCACTCTCTCTGCTTAA
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| Protein seq | METPKISGVALAAAIAVVLAMATTPAVAQNSPQDFVDLHNAARRVEGVGEVVWDDAVAAYAENYAAERAGDCALIHSGSWEKAGYGENLFGGSGSEWTAADAVNSWVGEKDLYDYDSNSCLGSWDSCLHYTQVMWSRTTAIGCARVDCDNGGVFITCNYNPAGNFQGERPFERGLTLSA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0126301 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g03368 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0124900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001650 | SBH | 0.201245 | 2083.232178 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0001670 | SBH | 0.0 | 149.281891 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0001550 | RBH | 0.0 | 2537.416016 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0001600 | RBH | 0.086808 | 27.265078 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0001590 | RBH | 3.452589 | 583.380737 | 1.495711 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0022500 | RBH | 1.1974 | 708.0752565 | 3.6619435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0001640 | SBH | 0.0 | 162.529724 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0021400 | SBH | 6.133312 | 704.8104245 | 0.090662 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0001660 | SBH | 0.0 | 4.064925 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0001730 | SBH | 0.0 | 226.949020 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0001700 | SBH | 0.0 | 548.556946 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0001800 | SBH | 0.0 | 3.576361 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0001690 | SBH | 0.0 | 435.551758 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G001730 | SBH | 0.0 | 51.872082 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0001700 | RBH | 0.0 | 1304.566284 | 0.0 |
