Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g36570 | OGI:06059800 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:21483762-21484517 | ||||||||
| Gene Symbol | SCP37, OsSCP37 | ||||||||||
| DNA seq | TCAGCCTGCGCGCTTCATGCCGCCGTGGCGGCCGAATAGCCCCGCCTGCAACACCCAATCCTTGACCATCTCCTGCGCCGCGTGGCCGTTGTCCGCCGGCAAGAGGTGCCCGGCGCCGTAGACGACGACGTGGGAGAGCGGGCCGGAGCGCTGCACATACCCGGCGAGCTCCTCGCCGATGCGCCACACGGCGCAGTCGGCGTCGAGGAAGACGGCCAGGCCGTCCCACTTCAGCTCCCGCATCCACGCCTCCGTGGACACCACGCCGTCCCTGAGGTCACGGATGCCCTGGTACAGCAGCACGCGCGTTCCCCGCAGCAGCGCCTCCACCTTCGGCTTCACGCTCTTCATCACGTCCCCATGCATCGCCGCGCCTACCGCGTCGCTGCACTCCTCCCACTCCATATCGCCACGCGCGCCCAGGGCCGCCTTCACCTCCACCCGGTTCACGAACTTCCCCACGGGACCCGTCTCGTAGGGGCGCTGCTTCGCTGCGTCGAACAGCGTCGCCAGGCCCGTCGCGTTCTCCAGCAACGACAGCACGAGCTCCCTCGTGTCGGCCCGTCGCGTTCTCCAGCAACGACAACACGAGCTCCCTCGCGTCGGCCAGCCGCCGCGTCGCCCATCGCCGGCCGCTGACGCCCTTCTCCTCCCGCCTGCTGAGTCAGAGAAGGGAGAGAAATACGAGGAAAGGAGAGAAGAGGGAAAAGAGAGAGAGAGGAGGTTGAAGTGGTCACGCTGACACGTGGGTCCCAT
More
|
||||||||||
| CDS seq | ATGGGACCCACGTGTCAGCGTGACCACTTCAACCTCCTCTCTCTCTCTTTTCCCTCTTCTCTCCTTTCCTCGTATTTCTCTCCCTTCTCTGACTCAGCAGGCGGGAGGAGAAGGGCGTCAGCGGCCGGCGATGGGCGACGCGGCGGCTGGCCGACGCGAGGGAGCTCGTGTTGTCGTTGCTGGAGAACGCGACGGGCCGACACGAGGGAGCTCGTGCTGTCGTTGCTGGAGAACGCGACGGGCCTGGCGACGCTGTTCGACGCAGCGAAGCAGCGCCCCTACGAGACGGGTCCCGTGGGGAAGTTCGTGAACCGGGTGGAGGTGAAGGCGGCCCTGGGCGCGCGTGGCGATATGGAGTGGGAGGAGTGCAGCGACGCGGTAGGCGCGGCGATGCATGGGGACGTGATGAAGAGCGTGAAGCCGAAGGTGGAGGCGCTGCTGCGGGGAACGCGCGTGCTGCTGTACCAGGGCATCCGTGACCTCAGGGACGGCGTGGTGTCCACGGAGGCGTGGATGCGGGAGCTGAAGTGGGACGGCCTGGCCGTCTTCCTCGACGCCGACTGCGCCGTGTGGCGCATCGGCGAGGAGCTCGCCGGGTATGTGCAGCGCTCCGGCCCGCTCTCCCACGTCGTCGTCTACGGCGCCGGGCACCTCTTGCCGGCGGACAACGGCCACGCGGCGCAGGAGATGGTCAAGGATTGGGTGTTGCAGGCGGGGCTATTCGGCCGCCACGGCGGCATGAAGCGCGCAGGCTGA
More
|
||||||||||
| Protein seq | MGPTCQRDHFNLLSLSFPSSLLSSYFSPFSDSAGGRRRASAAGDGRRGGWPTRGSSCCRCWRTRRADTRELVLSLLENATGLATLFDAAKQRPYETGPVGKFVNRVEVKAALGARGDMEWEECSDAVGAAMHGDVMKSVKPKVEALLRGTRVLLYQGIRDLRDGVVSTEAWMRELKWDGLAVFLDADCAVWRIGEELAGYVQRSGPLSHVVVYGAGHLLPADNGHAAQEMVKDWVLQAGLFGRHGGMKRAG |
||||||||||
| Function | Serine carboxypeptidase-like 50 [UniProtKB/Swiss-Prot:Q9M9Q6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g36570 | LOC_Os06g36570.1 | Chr06 | 21483762 | 21484517 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGACCCACGTGTCAGCGTGACCACTTCAACCTCCTCTCTCTCTCTTTTCCCTCTTCTCTCCTTTCCTCGTATTTCTCTCCCTTCTCTGACTCAGCAGGCGGGAGGAGAAGGGCGTCAGCGGCCGGCGATGGGCGACGCGGCGGCTGGCCGACGCGAGGGAGCTCGTGTTGTCGTTGCTGGAGAACGCGACGGGCCGACACGAGGGAGCTCGTGCTGTCGTTGCTGGAGAACGCGACGGGCCTGGCGACGCTGTTCGACGCAGCGAAGCAGCGCCCCTACGAGACGGGTCCCGTGGGGAAGTTCGTGAACCGGGTGGAGGTGAAGGCGGCCCTGGGCGCGCGTGGCGATATGGAGTGGGAGGAGTGCAGCGACGCGGTAGGCGCGGCGATGCATGGGGACGTGATGAAGAGCGTGAAGCCGAAGGTGGAGGCGCTGCTGCGGGGAACGCGCGTGCTGCTGTACCAGGGCATCCGTGACCTCAGGGACGGCGTGGTGTCCACGGAGGCGTGGATGCGGGAGCTGAAGTGGGACGGCCTGGCCGTCTTCCTCGACGCCGACTGCGCCGTGTGGCGCATCGGCGAGGAGCTCGCCGGGTATGTGCAGCGCTCCGGCCCGCTCTCCCACGTCGTCGTCTACGGCGCCGGGCACCTCTTGCCGGCGGACAACGGCCACGCGGCGCAGGAGATGGTCAAGGATTGGGTGTTGCAGGCGGGGCTATTCGGCCGCCACGGCGGCATGAAGCGCGCAGGCTGA
More
|
|||||||
| Protein seq | MGPTCQRDHFNLLSLSFPSSLLSSYFSPFSDSAGGRRRASAAGDGRRGGWPTRGSSCCRCWRTRRADTRELVLSLLENATGLATLFDAAKQRPYETGPVGKFVNRVEVKAALGARGDMEWEECSDAVGAAMHGDVMKSVKPKVEALLRGTRVLLYQGIRDLRDGVVSTEAWMRELKWDGLAVFLDADCAVWRIGEELAGYVQRSGPLSHVVVYGAGHLLPADNGHAAQEMVKDWVLQAGLFGRHGGMKRAG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.203183 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0561100 | RBH | 0.0 | 0.0 | 1.473375 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0561100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0019620 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0019500 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0019560 | RBH | 0.0 | 0.0 | 0.357276 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0019340 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0019750 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0339300 | RBH | 0.0338555 | 0.1439815 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019230 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0313500 | RBH | 0.034003 | 0.087583 | 0.174707 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0019680 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0019650 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0019300 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0019990 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0019460 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G019340 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0019520 | RBH | 0.0 | 0.0 | 0.0 |
