Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g20440 | OGI:06032940 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:11742656-11746429 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAATGTGTGCCGGCATACCCGATGTGACACGCCAAAACTTTACACCATTGGATCTAAACACAGCCATAATACAAGCAAAAATTATCAAATCAAAAATATTTTTTATAACTCAAATTTAAAATCTCGAGTTAAAAGTTTCAAATCTGAGTAGAAAGTTTTCAAATCTCGAGTTGAAAGTTTTCAAAATTTATCTTGCAAATTTAAATTCCGAGTTGAAAATTTTCAAAGTTTGTGTTGAAAGATTTCAAAATTTGACTTCAAAGTTTAAATCTTAAGTCGAAAGTTTTCAAATCTAACTTGAAAGTTTTCAATCTATTAGAAAAAAGAAAAAGTTCTTGTAGGTACTATGATTAGCACTAATCACTAATCACGTCATCATTAGTGCTAATCACATGGTTAGCGACGGGGGCGTAACATACGCGTCGGCCTTCGGAGCGCGTAAGCGTTAGGAATCCCCTTCCTTTTCTTCCCAAACTCATTAGTTATGTCCTTGACCATGTCATGGACCTTATCTCCGGACAAATTATTAGCAGCAGACTGAAGTTCTCTCTTACCGTTTGAAATTTTTCTTCTTTCTTCTAAATGCGTGACGTAGTGGGAGCCATCTCCTATGACCCATGTAATCTATCTTTCGTGATTTCTTCAGCCACCTACTACGTGTATCTTCCATACAGTCGGAGCAAGCCTTCTTTCCTTTGACAGTTTGTCCTGAAAGATTACCAAGTACAAAGTACTCATTAATGGTGCAGAACAATAGAACTTGTAGCTTGAAGTACTCCTGACCATACGCATCCCAAGTTTCCACACCTTTCTTCCAAAGAATTTCTTGGTCATCGATAACATGCTCCAAGAACACATCAATATCATTGCTGGATTGTTTCGGTCCTTGGATTAACAAGCACAACATAATGTATTTTCTTTTTGAAGCACAACCATGGCGGTAGGTTATAATTTGCAATAAGCACTAGCCAAGTGCTATGAGAACTGCTCATGTCTCCAAAAGGATTCATGCCATCCGTACACAAACATATCCTCATGTTTTTAGGGTCGGCTATGAATTCTAGGTATTTCTGATCGATATTCCTTCATTGAATCGAATCTGCAGGGTATCTTAGCATACCTTTGTTCAGAACTCCCAAGGGACTTTAGAACTCCCATGTACCTTATCTCTATGGCATGCCAACGTATTAACTCCGCTTCCTTGGGGTTGGCAAAGATTATATTGAAACAATCAATGATAGGTAATATCACACAACCTTCGCCGGACCACCCCGCTTTGAATTCTTTCCTTTGTCAACACTTTTCTTTCGCTTGTATCAAGAAGTCTTGCAGACAGGACAAGCATCTAAGTCCGCATATTGCTTGAGGTACAATATGTAGTCGTTTGGACAAGCGTGAATTCTACGAACCTCTAACCTCAGAGGACACAAAACCTGCTTTGCTTCATATGTTGTCATAGGCAATGTGTTCTTCTCGAGAAGCATGGCTTTAAATATTCCCAAAAGGTCTGTGACTCTTGTCTGTCCGTCCACTACTTGCCTTCAGCTTCATTAAGTCCAAGGTAGCTGACAATTTGGTGTATTTTTCCTGGCATCCGACGTATAGAGGTGTCTCCGAATCACTGATCAACCTGGTGAACTTCATGAAATCTCTCTCGTTGTAAGGCTGTGTTTGCAACCCCTTGTTCCCAACCCCTCCCCCTCGTTTTCCGCGCGTACGCTTTTCAAATTGCTAAAAGGTGTGTATTTTTACAAAAAAAGTTTCTATACGAAAGTTGCTTAAAAATCAAATTAATCCATTTTTGAAAAAAAAAATAGCTAATACTTAATTAATCACGCGCTAATGAACCGCTCCGTTTACCGTGCGGAGGCACTATGTTCCCAACCTGAACATGAGAACACAGCATAAGTTAGGTTCTCAACGTCACGCAACATGTCTTGCAGCATATAGTATGTATGTATATATGTGTATATATATATATATATATATAGTTTGTCCAAGGATAGTTTGTGTTTTTCCTGTTCCTGGGGGCCCCTACAAATATACATTGGAGTTCTATATGAATGGCATGTGACAACAAGTAGAGCACATGTAGCTGCATATACTCTAGTTCTCAAGGCACTAGCATTTCTCTAAAATAGGTTAATGATAAATAATACAGAAAAATAAACAAATATAACTGGAAATAAGCAAACAAACCTGGATAAGAACAAAGGATCTGCGAGAAAGACCTGCCTGCAAGAGATAATGCATTGATCAATCAGACATCTGATTTTTCTTAGAACTAAATTGAGCAACAAAAAAGGATATTAAGAATAATGCTCACGTTGACTGCATCTAGTTGTGAATCATTAAGGTTTGTTTTAAGATAATCCATAAGTGGCTCAGGGACATTCCAAGCACGGTTTTGATCATTCCCACCACTGTTCTTCTCACTAGCTGAAAGAATCAGATCCTTAAAAGGAAGTGATGCTACAGAGTGCATGCCCGAGAATTCTCGCATTATGGTAGACAAGCTGCAAATCTGACAATTTTAACCATAAAAGAAAATAGCATATTCATATGTGTTGTCAATGAATTATGCAAGCATGAAAACTCAGGCATTCTTTATTAGCAGTTGAAACTCACCTTTAAAATCCAGAGGAAGCTCTCTGTAGTTGAAAAAATGGAAGCAATACGCTGCAGCCTAGAACAGCTCACAGGCTTTGCTACATTAAGATTTTTTATTTCACCTGCCACAAATGTCCTTAGAGAAATCGTTTCTCTGCCACCCCGCTGTTCCACTAAGGCAAAGGCATATGCACTGGGGGTCACTCCCTCTTCAAACTACAAAAGTGCAGATATATATCAATGTGATGAATTTTCAATCATAACTTCTTTCTTGAAGAGATATCGCATAGAATCGATGGAGCATTTTGCTAGCCTGGCATATTATCTAAAACCATGGAAAGCACTTTTTCTGGTGAAATTATGTCTCAAGTTCCCCATAGCCCTTCCAAATGTAGGAGCGCAGATAAGTAACTAACATTGTCTTGAGTTCTTGACACGCTATATGTTCCACTAAATTCTGTAGCCATCTATACCTTTTGAAACATTTCCTATCACACCACTAAGGTGCTAAAGCACTTACTTTCTCTTTGGACAGCAGCAGGAGATCGTTCTCCGACACCATCTCCCGGAAATCATCAAGCACGGCCATGGACACCTTGTGGAACCCCTCCGACTCGGTGCACGACGCCACAATCCCCTTCTGCCAGTCCTGCCCAGCCTCTGCCCACACAGAAACGCAAGGGAGAGAAAAACAACACACACACACCCACACACACACACTGTTAAATAAACCGACAGCAAATTGGGGGGGCAACACGAAATCGGGCGCGCCACCCACCCACCCACCTTCCTCCTCGTCGCTGCGCCCCTGGACGATCTGCGCCTTCACCTCCTCGAACAGCAGCGGCTCGAACACAGCGAGGTACTCGGCCACCGAGGCGTACGTGTTCTTCACGCGCCCCAGCCCCTTCGCCTGCTGCTGCCCGCCCTGTCCTCCCAAGCCGCCATATAGAAAAAAAATTCAAAGGTGGTGTCGGTGATTGCAAAGCGAGCGCTCGGGGCGGGGCGGGGAGGGGCGTACCTTGGAGTCCGCGACGAGGCGGACGTAGTCCCAGCTGAGGACGATCTTGTGGAAGCGGTCCATGGTGGAGGCGGCGACGCCCGACGAGGAGGAAGAGGCGCCGCCTCCGCCTCCGCCGCCGCCGGATTTGTCCACCGCCAT
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| CDS seq | ATGGCGGTGGACAAATCCGGCGGCGGCGGAGGCGGAGGCGGCGCCTCTTCCTCCTCGTCGGGCGTCGCCGCCTCCACCATGGACCGCTTCCACAAGATCGTCCTCAGCTGGGACTACGTCCGCCTCGTCGCGGACTCCAAGGGCGGGCAGCAGCAGGCGAAGGGGCTGGGGCGCGTGAAGAACACGTACGCCTCGGTGGCCGAGTACCTCGCTGTGTTCGAGCCGCTGCTGTTCGAGGAGGTGAAGGCGCAGATCGTCCAGGGGCGCAGCGACGAGGAGGAAGAGGCTGGGCAGGACTGGCAGAAGGGGATTGTGGCGTCGTGCACCGAGTCGGAGGGGTTCCACAAGGTGTCCATGGCCGTGCTTGATGATTTCCGGGAGATGGTGTCGGAGAACGATCTCCTGCTGCTGTCCAAAGAGAAATTTGAAGAGGGAGTGACCCCCAGTGCATATGCCTTTGCCTTAGTGGAACAGCGGGGTGGCAGAGAAACGATTTCTCTAAGGACATTTGTGGCAGGTGAAATAAAAAATCTTAATGTAGCAAAGCCTGTGAGCTGTTCTAGGCTGCAGCGTATTGCTTCCATTTTTTCAACTACAGAGAGCTTCCTCTGGATTTTAAAGATTTGCAGCTTGTCTACCATAATGCGAGAATTCTCGGGCATGCACTCTGTAGCATCACTTCCTTTTAAGGATCTGATTCTTTCAGCTAGTGAGAAGAACAGTGGTGGGAATGATCAAAACCGTGCTTGGAATGTCCCTGAGCCACTTATGGATTATCTTAAAACAAACCTTAATGATTCACAACTAGATGCAGTCAACGCAGGTCTTTCTCGCAGATCCTTTGTTCTTATCCAGGTTGGGAACATAGTGCCTCCGCACGGACCGAAACAATCCAGCAATGATATTGATGTGTTCTTGGAGCATGTTATCGATGACCAAGAAATTCTTTGGAAGAAAGGTGTGGAAACTTGGGATGCGTATGGTCAGGAGTACTTCAAGCTACAAGTTCTATTGTTCTGCACCATTAATGAGTACTTTGTACTTGGTAATCTTTCAGGACAAACTGTCAAAGGAAAGAAGGCTTGCTCCGACTGTATGGAAGATACACGTAGTAGGTGGCTGAAGAAATCACGAAAGATAGATTACATGGGTCATAGGAGATGGCTCCCACTACGTCACGCATTTAGAAGAAAGAAGAAAAATTTCAAACGATCCAATGGTGTAAAGTTTTGGCGTGTCACATCGGGTATGCCGGCACACATTTGA
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| Protein seq | MAVDKSGGGGGGGGASSSSSGVAASTMDRFHKIVLSWDYVRLVADSKGGQQQAKGLGRVKNTYASVAEYLAVFEPLLFEEVKAQIVQGRSDEEEEAGQDWQKGIVASCTESEGFHKVSMAVLDDFREMVSENDLLLLSKEKFEEGVTPSAYAFALVEQRGGRETISLRTFVAGEIKNLNVAKPVSCSRLQRIASIFSTTESFLWILKICSLSTIMREFSGMHSVASLPFKDLILSASEKNSGGNDQNRAWNVPEPLMDYLKTNLNDSQLDAVNAGLSRRSFVLIQVGNIVPPHGPKQSSNDIDVFLEHVIDDQEILWKKGVETWDAYGQEYFKLQVLLFCTINEYFVLGNLSGQTVKGKKACSDCMEDTRSRWLKKSRKIDYMGHRRWLPLRHAFRRKKKNFKRSNGVKFWRVTSGMPAHI |
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| Function | Probable helicase MAGATAMA 3 [UniProtKB/Swiss-Prot:B6SFA4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g20440 | LOC_Os06g20440.1 | Chr06 | 11742656 | 11746429 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGTGGACAAATCCGGCGGCGGCGGAGGCGGAGGCGGCGCCTCTTCCTCCTCGTCGGGCGTCGCCGCCTCCACCATGGACCGCTTCCACAAGATCGTCCTCAGCTGGGACTACGTCCGCCTCGTCGCGGACTCCAAGGGCGGGCAGCAGCAGGCGAAGGGGCTGGGGCGCGTGAAGAACACGTACGCCTCGGTGGCCGAGTACCTCGCTGTGTTCGAGCCGCTGCTGTTCGAGGAGGTGAAGGCGCAGATCGTCCAGGGGCGCAGCGACGAGGAGGAAGAGGCTGGGCAGGACTGGCAGAAGGGGATTGTGGCGTCGTGCACCGAGTCGGAGGGGTTCCACAAGGTGTCCATGGCCGTGCTTGATGATTTCCGGGAGATGGTGTCGGAGAACGATCTCCTGCTGCTGTCCAAAGAGAAATTTGAAGAGGGAGTGACCCCCAGTGCATATGCCTTTGCCTTAGTGGAACAGCGGGGTGGCAGAGAAACGATTTCTCTAAGGACATTTGTGGCAGGTGAAATAAAAAATCTTAATGTAGCAAAGCCTGTGAGCTGTTCTAGGCTGCAGCGTATTGCTTCCATTTTTTCAACTACAGAGAGCTTCCTCTGGATTTTAAAGATTTGCAGCTTGTCTACCATAATGCGAGAATTCTCGGGCATGCACTCTGTAGCATCACTTCCTTTTAAGGATCTGATTCTTTCAGCTAGTGAGAAGAACAGTGGTGGGAATGATCAAAACCGTGCTTGGAATGTCCCTGAGCCACTTATGGATTATCTTAAAACAAACCTTAATGATTCACAACTAGATGCAGTCAACGCAGGTCTTTCTCGCAGATCCTTTGTTCTTATCCAGGTTGGGAACATAGTGCCTCCGCACGGACCGAAACAATCCAGCAATGATATTGATGTGTTCTTGGAGCATGTTATCGATGACCAAGAAATTCTTTGGAAGAAAGGTGTGGAAACTTGGGATGCGTATGGTCAGGAGTACTTCAAGCTACAAGTTCTATTGTTCTGCACCATTAATGAGTACTTTGTACTTGGTAATCTTTCAGGACAAACTGTCAAAGGAAAGAAGGCTTGCTCCGACTGTATGGAAGATACACGTAGTAGGTGGCTGAAGAAATCACGAAAGATAGATTACATGGGTCATAGGAGATGGCTCCCACTACGTCACGCATTTAGAAGAAAGAAGAAAAATTTCAAACGATCCAATGGTGTAAAGTTTTGGCGTGTCACATCGGGTATGCCGGCACACATTTGA
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| Protein seq | MAVDKSGGGGGGGGASSSSSGVAASTMDRFHKIVLSWDYVRLVADSKGGQQQAKGLGRVKNTYASVAEYLAVFEPLLFEEVKAQIVQGRSDEEEEAGQDWQKGIVASCTESEGFHKVSMAVLDDFREMVSENDLLLLSKEKFEEGVTPSAYAFALVEQRGGRETISLRTFVAGEIKNLNVAKPVSCSRLQRIASIFSTTESFLWILKICSLSTIMREFSGMHSVASLPFKDLILSASEKNSGGNDQNRAWNVPEPLMDYLKTNLNDSQLDAVNAGLSRRSFVLIQVGNIVPPHGPKQSSNDIDVFLEHVIDDQEILWKKGVETWDAYGQEYFKLQVLLFCTINEYFVLGNLSGQTVKGKKACSDCMEDTRSRWLKKSRKIDYMGHRRWLPLRHAFRRKKKNFKRSNGVKFWRVTSGMPAHI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0309400 | SBH | 0.094764 | 0.350414 | 0.187843 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0309400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012880 | SBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0012730 | SBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0012780 | SBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012830 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0012960 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0191700 | RBH | 0.836113 | 0 | 0.0024865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0012420 | SBH | 0.000000 | 0.000000 | 0.119821 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0188000 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012980 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0012830 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0012640 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0013110 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0012710 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G012600 | SBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012920 | SBH | 1.000621 | 0.000000 | 0.000000 |
