Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0309400 | OGI:06032940 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:11744988-11745940 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTGCATCTAGTTGTGAATCATTAAGGTTTGTTTTAAGATAATCCATAAGTGGCTCAGGGACATTCCAAGCACGGTTTTGATCATTCCCACCACTGTTCTTCTCACTAGCTGAAAGAATCAGATCCTTAAAAGGAAGTGATGCTACAGAGTGCATGCCCGAGAATTCTCGCATTATGGTAGACAAGCTGCAAATCTGACAATTTTAACCATAAAAGAAAATAGCATATTCATATGTGTTGTCAATGAATTATGCAAGCATGAAAACTCAGGCATTCTTTATTAGCAGTTGAAACTCACCTTTAAAATCCAGAGGAAGCTCTCTGTAGTTGAAAAAATGGAAGCAATACGCTGCAGCCTAGAACAGCTCACAGGCTTTGCTACATTAAGATTTTTTATTTCACCTGCCACAAATGTCCTTAGAGAAATCGTTTCTCTGCCACCCCGCTGTTCCACTAAGGCAAAGGCATATGCACTGGGGGTCACTCCCTCTTCAAACTACAAAAGTGCAGATATATATCAATGTGATGAATTTTCAATCATAACTTCTTTCTTGAAGAGATATCGCATAGAATCGATGGAGCATTTTGCTAGCCTGGCATATTATCTAAAACCATGGAAAGCACTTTTTCTGGTGAAATTATGTCTCAAGTTCCCCATAGCCCTTCCAAATGTAGGAGCGCAGATAAGTAACTAACATTGTCTTGAGTTCTTGACACGCTATATGTTCCACTAAATTCTGTAGCCATCTATACCTTTTGAAACATTTCCTATCACACCACTAAGGTGCTAAAGCACTTACTTTCTCTTTGGACAGCAGCAGGAGATCGTTCTCCGACACCATCTCCCGGAAATCATCAAGCACGGCCATGGACACCTTGTGGAACCCCTCCGACTCGGTGCACGACGCCACAATCCCCTTCTGCCAGTCCTGCCCAGCCTCTGCCCACACAGA
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| CDS seq | TTTGAAGAGGGAGTGACCCCCAGTGCATATGCCTTTGCCTTAGTGGAACAGCGGGGTGGCAGAGAAACGATTTCTCTAAGGACATTTGTGGCAGGTGAAATAAAAAATCTTAATGTAGCAAAGCCTGTGAGCTGTTCTAGGCTGCAGCGTATTGCTTCCATTTTTTCAACTACAGAGAGCTTCCTCTGGATTTTAAAGGTGAGTTTCAACTGCTAA |
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| Protein seq | FEEGVTPSAYAFALVEQRGGRETISLRTFVAGEIKNLNVAKPVSCSRLQRIASIFSTTESFLWILKVSFNC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0309400 | OsNip_06t0309400-00 | Chr06 | 11744988 | 11745940 | - | RAP2018-11-26 | ||
| CDS seq | TTTGAAGAGGGAGTGACCCCCAGTGCATATGCCTTTGCCTTAGTGGAACAGCGGGGTGGCAGAGAAACGATTTCTCTAAGGACATTTGTGGCAGGTGAAATAAAAAATCTTAATGTAGCAAAGCCTGTGAGCTGTTCTAGGCTGCAGCGTATTGCTTCCATTTTTTCAACTACAGAGAGCTTCCTCTGGATTTTAAAGGTGAGTTTCAACTGCTAA
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| Protein seq | FEEGVTPSAYAFALVEQRGGRETISLRTFVAGEIKNLNVAKPVSCSRLQRIASIFSTTESFLWILKVSFNC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.094764 | 0.350414 | 0.187843 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0310200 | RBH | 2.095152 | 1.402462 | 2.043310 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g20500 | RBH | 1.509975 | 1.095220 | 0.653784 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0309400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012920 | RBH | 0.000000 | 5.158474 | 2.983553 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0012730 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0012820 | RBH | 0.000000 | 4.763629 | 7.463937 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012870 | RBH | 0.181844 | 0.089163 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0013000 | RBH | 7.044560 | 6.624845 | 14.328947 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0191700 | RBH | 0.836113 | 0 | 0.0024865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0012460 | RBH | 0.166426 | 0.086178 | 0.791412 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0188500 | RBH | 8.55332 | 32.627218 | 30.659929 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0013020 | RBH | 0.182416 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0012920 | RBH | 0.460051 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0012680 | RBH | 0.000000 | 4.648478 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0013110 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0012780 | RBH | 0.000000 | 2.618852 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G012630 | RBH | 0.451984 | 2.438266 | 3.919258 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012920 | RBH | 1.000621 | 0.000000 | 0.000000 |
