Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g20310 | OGI:06032740 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:11669578-11673430 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGCAACCAAACACCACCATATATACATAGATCTCCGTTTCCTTTCCAGTTTGCGTATATACATAGGACCAAAAGAGAAATAGAAAGGGAACCATGACGATCCATCCTTAGTTGAGTAAAATGATTCATCCTCAGAGAGATAATATTTCTATGCCGTGCTATTGTTAGAAAGCTTCAGACTGGTAACATTGCAATGTTGGAAAGGCTTGGATGGTAAAGGTACTAGGGCGGCACTACGCCGTCCCAGCGCCGGTGGTGGACGCCGCCGCGGCCGCCCATGTCGCTCTCACCGGAGAGCACGAAGACGCGCGCCCAGAACGGAAGACTGCAGATGGGGAAAATCGCACCTCCATACCCAGCAAAAGAAGAAACCACAAACACACCCCAAAAACAGAATTTTGTCTTCTTCACATTCAATTTTCAACAATAGCAAGGACCTAAACAAAAAGTCACAAAGGCACAGAATGCATAACCGATAGACCGATCTGAAATAACAGAAGAAACAAGTAGATCAAAACAAAAAATGACAGCATGGCACGCGTCACTCAACGCACCAGCCAACCGGAAACAACCGTCACAATGACCGGCAACCACACCCCAAATGAACAAACTAAATACGTAATTAACCGGTATAATCAAGCAGCCAACCGGCGCACCGGCAACGCATAAGCATGCAGATTAGGCCGAGGAGCAGATAACAGTAAACGGAGACGTGTAAAACAACCAGATAGCCAGAAAAAAAATGAAAAATCGGAGAAAAAGGGGATGGTTAGGGGAGTTATTGATTGATGATTTGTAATGTAACAGTATCATTCAATTCTTCAAAAGGGAATGCTACAGAGCACTAAAATGTGATACCGTGGCCCAAAAAACAATATCCAAGTCCTAAAACGAAAAATGGATATCCTTGGTCAGTAAATCTCAACTCCCGTGTCAAAACTTGCTACCTTCACTACGGATATGGATACTTTGTGATCCAGAAACCAACCTAAATCAAGAAAAGACAAGAAAAATAAGATTATAACATAAATAATGAATTTTATGAGCGATGATAATGACCATTATGAAAGCATACCTCCAAAGTATGTACCTCTGAATACTTCCTGGTCATCTATGTCTTTCCACAGCAACAACTCTGTTTTCCATGACATGCTATTAGTTAATATAGCTTTCTAAGAGAGTAAAAACAGTGGCAAAAACTTTGAGAATATAGTAACGTACCAAAACCCAAGAGATGACCTGTCCCGATGTTACTACAACTGCAAGTGCTTCGTAGGTCCTCATCAATTTCCATGCAAACCCTGGGTCAGCCGGAGCTGGAGGGGCAGAGTGGCCAGTCATCTCCAGTGTAGGATCAAGTGCCATTCGATACAGGCAGTACAAGACAAACAGTGAAAAAAGCATGAAGCCTACTCGTGCAACACTCTCTCCACAGCAAGTCTGCCACTTGTTTGAGCCAAAAAGAGCACAAGGCAGAGCAATGCAGCAGCAACCCACTACAATGCTAAATGCTATCACTATTGTGCTGAGATACTCATAGGGGAGCCAAGGTAGGAATGGGAACAGAAGGGAAAGTCCAGATATCAGTACGGCAAGAATCACGATCTGGACCTTATCCCAGCGAGAGTCGTCCTACAAGAATTATAAAGAGTTACTGAGCAAAATTGAATTAGCATGGGTAACTCCGTGCTAATCATTTAAATCACTTATCCACCCTAAGCAGCCCACAATTAAAGGTGGGGAAAAAAGAGTACTCCAACTTACCACCAAGGAGGTAAAAGTGGTGGATTAATCTGAACCATTCATTATTTAGGTGCATGGGGTCAAATTATCAACATGCAAGAGGTTAGCCGGTTGACTTTTCATGTGCAATGTAGAAGGTTCATCTAATTCCCTGCAATTCTAGCTTATGTAAAAGAAAATATATTGCTCAGGACCATGTTACACGCACAAAACATTCTGGAAGTTGATGGTCCTATGTGCTATGGGATTTACATTTCAAGCATTCATTTTGAATCATATGGGACAATGTATAACTATGCTATAAGCATGCATACTGATATTAGATATATTTTTTTATAGAAACACGATTTCATGGATAATGCAGAAATTTCTTCATAAAAGAGAAATTCAAAAGTCTTGGAAAAAATTTGTAATACCTTCTTTTCCTCGGGTGCCAAAAGTGATTTGTGCAATCCTTGCACTGATTCCTCTCGCATCTCAATCATCTTTTCACGTCTCTTTAAAGCATGTTCTTGACGCCGTAGCTGAGCAGCCTTCAGGTGGAGGTTACCTAAGTCACTAGCGTGCTGTGCTGACAGTTCTATTGAACCTTCAAAAAATAACCAAACTTAGTAAGGTACACCCTGTTTTATTCTGTGGTACATATATATGGTATAGGAACATTTCTAGCTTCTAATGTCATTCAACGTACAGTGATACAGGCTTGGAAGAATTATGTCTAATTTTTGCATATGGTATAGGAACATTTCTACCTGCGTGAAGTGACGGAGGTAGCTTCCAAAGCTGTACTTGGTGCCAAGAGAGTGGCTGCAGCGAGCGGGAGCGAACAATTGGCTGCAAAAGCTGGTAATGTTCATCGACAAAGTGAATAACCATCTTCTTGTACAGATTGACGCCAAACAGGTGATGCTCCAGAAAGAAGTAAACCAAATCAGGGTTGCTGGGGTGTATGCCTGCAAGGATTGGGACCTGGTTGGGCAAACCCGTTGCCTTGTAGGTCTCATTCTCCCAAATGTCCCCAAGAAATGCCATGCAATTGGTCTTCCAATACGACATGCTTCTCGGACCGCAGATCAGCACCCAAACAACAACAGTAGTTGACTCAACTGGAGCATTGTGTACACGGGTTATCTCCACGTAGCGCAATCTCTCTTTGCTAACCCTGACACAGCGATCAGCCTCAATATCACGCTGTGATTTGTTTTGGTCTTCTATCGGGATATGCTCTGGGAGCTGGTGAAACTGCAGAACAGGATGATCACTGAACGGGTTGCAGCTGATGAGACCCCTCCACAGATTAACAAACCAAAGGTTCCCATCGAACGAAATGACATCATCGTTGTGCCACCCCCAGTGCAAATTACTTCGTCCGGGCATATCAGGGCGGATGAGACGACTCACTGCCCAAGCGGGAGTTCCAGAACGGAAGACAATCAGCTTGGCGAGTTCGGCGCCGGCCTCGATCTGCAACTCAGCGATGGCGTAGTCCTTGCCGCCGGTTCCAGGGGAGGTGAGGAAGCCGACGTTCTTGAGGTTGGAGATGTGGGGCACGGATCCGCCGACTCGCTCCGGGACACGCTCGGCGATTCCGGTGGCCTCGTGGGGGTTGCTGGCCCCGACGGGGAGGAATTCGCGAAGCACGGCGAAGCTACCGGGTGGGTCGTCGTCGAGGTTGAGGCCGCAGGAGGGGCTCGCCGCGGTGTGGACGAGGAGGCCGAAGGGGTCGGCGGCGGCGACGTACGGTAGCTCGTCCGGGTTGCTCGGGAGAGCGTGGAACTTGGCCGGCACGGTGAGCGTCGACAGACGCGGCGGCTCGGCGACGTTGAGGGCGACCTCCCGCGGATCTTCCTCGTCGTCCACGCACGCGACGCGATCGAGTATGACCCACCCCCGCGCCAGCTCCTCCGCCGCAGACGAGCTCCCCTCCTCCATTCCGCACCACCACCGGCACCGGCGGACACCGGCGAGGTGGCGAGACGGAGAGGAAGAGGACGAAGATTGGGAGATGGGAGAGGAAGAGGGGTTTGGGTTTGAGTTTTTTTTTTTTTTTTTTGAGAGGAGTTTCGTTTTTTCTTTTTTGATTGATGATACGGAGAGGAAGATTATTGGGT
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| CDS seq | ATGGAGGAGGGGAGCTCGTCTGCGGCGGAGGAGCTGGCGCGGGGGTGGGTCATACTCGATCGCGTCGCGTGCGTGGACGACGAGGAAGATCCGCGGGAGGTCGCCCTCAACGTCGCCGAGCCGCCGCGTCTGTCGACGCTCACCGTGCCGGCCAAGTTCCACGCTCTCCCGAGCAACCCGGACGAGCTACCGTACGTCGCCGCCGCCGACCCCTTCGGCCTCCTCGTCCACACCGCGGCGAGCCCCTCCTGCGGCCTCAACCTCGACGACGACCCACCCGGTAGCTTCGCCGTGCTTCGCGAATTCCTCCCCGTCGGGGCCAGCAACCCCCACGAGGCCACCGGAATCGCCGAGCGTGTCCCGGAGCGAGTCGGCGGATCCGTGCCCCACATCTCCAACCTCAAGAACGTCGGCTTCCTCACCTCCCCTGGAACCGGCGGCAAGGACTACGCCATCGCTGAGTTGCAGATCGAGGCCGGCGCCGAACTCGCCAAGCTGATTGTCTTCCGTTCTGGAACTCCCGCTTGGGCAGTGAGTCGTCTCATCCGCCCTGATATGCCCGGACGAAGTAATTTGCACTGGGGGTGGCACAACGATGATGTCATTTCGTTCGATGGGAACCTTTGGTTTGTTAATCTGTGGAGGGGTCTCATCAGCTGCAACCCGTTCAGTGATCATCCTGTTCTGCAGTTTCACCAGCTCCCAGAGCATATCCCGATAGAAGACCAAAACAAATCACAGCGTGATATTGAGGCTGATCGCTGTGTCAGGGTTAGCAAAGAGAGATTGCGCTACGTGGAGATAACCCGTGTACACAATGCTCCAGTTGAGTCAACTACTGTTGTTGTTTGGGTGCTGATCTGCGGTCCGAGAAGCATGTCGTATTGGAAGACCAATTGCATGGCATTTCTTGGGGACATTTGGGAGAATGAGACCTACAAGGCAACGGGTTTGCCCAACCAGGTCCCAATCCTTGCAGGCATACACCCCAGCAACCCTGATTTGGTTTACTTCTTTCTGGAGCATCACCTGTTTGGCGTCAATCTGTACAAGAAGATGGTTATTCACTTTGTCGATGAACATTACCAGCTTTTGCAGCCAATTGTTCGCTCCCGCTCGCTGCAGCCACTCTCTTGGCACCAAGTACAGCTTTGGAAGCTACCTCCGTCACTTCACGCAGGTTCAATAGAACTGTCAGCACAGCACGCTAGTGACTTAGGTAACCTCCACCTGAAGGCTGCTCAGCTACGGCGTCAAGAACATGCTTTAAAGAGACGTGAAAAGATGATTGAGATGCGAGAGGAATCAGTGCAAGGATTGCACAAATCACTTTTGGCACCCGAGGAAAAGAAGGACGACTCTCGCTGGGATAAGGTCCAGATCGTGATTCTTGCCGTACTGATATCTGGACTTTCCCTTCTGTTCCCATTCCTACCTTGGCTCCCCTATGAGTATCTCAGCACAATAGTGATAGCATTTAGCATTGTAGTGGGTTGCTGCTGCATTGCTCTGCCTTGTGCTCTTTTTGGCTCAAACAAGTGGCAGACTTGCTGTGGAGAGAGTGTTGCACGAGTAGGCTTCATGCTTTTTTCACTGTTTGTCTTGTACTGCCTGTATCGAATGGCACTTGATCCTACACTGGAGATGACTGGCCACTCTGCCCCTCCAGCTCCGGCTGACCCAGGGTTTGCATGGAAATTGATGAGGACCTACGAAGCACTTGCAGTTGTAGTAACATCGGGACAGGTCATCTCTTGGGTTTTGAGTTGTTGCTGTGGAAAGACATAG
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| Protein seq | MEEGSSSAAEELARGWVILDRVACVDDEEDPREVALNVAEPPRLSTLTVPAKFHALPSNPDELPYVAAADPFGLLVHTAASPSCGLNLDDDPPGSFAVLREFLPVGASNPHEATGIAERVPERVGGSVPHISNLKNVGFLTSPGTGGKDYAIAELQIEAGAELAKLIVFRSGTPAWAVSRLIRPDMPGRSNLHWGWHNDDVISFDGNLWFVNLWRGLISCNPFSDHPVLQFHQLPEHIPIEDQNKSQRDIEADRCVRVSKERLRYVEITRVHNAPVESTTVVVWVLICGPRSMSYWKTNCMAFLGDIWENETYKATGLPNQVPILAGIHPSNPDLVYFFLEHHLFGVNLYKKMVIHFVDEHYQLLQPIVRSRSLQPLSWHQVQLWKLPPSLHAGSIELSAQHASDLGNLHLKAAQLRRQEHALKRREKMIEMREESVQGLHKSLLAPEEKKDDSRWDKVQIVILAVLISGLSLLFPFLPWLPYEYLSTIVIAFSIVVGCCCIALPCALFGSNKWQTCCGESVARVGFMLFSLFVLYCLYRMALDPTLEMTGHSAPPAPADPGFAWKLMRTYEALAVVVTSGQVISWVLSCCCGKT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g20310 | LOC_Os06g20310.1 | Chr06 | 11670344 | 11673430 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGGAGGGGAGCTCGTCTGCGGCGGAGGAGCTGGCGCGGGGGTGGGTCATACTCGATCGCGTCGCGTGCGTGGACGACGAGGAAGATCCGCGGGAGGTCGCCCTCAACGTCGCCGAGCCGCCGCGTCTGTCGACGCTCACCGTGCCGGCCAAGTTCCACGCTCTCCCGAGCAACCCGGACGAGCTACCGTACGTCGCCGCCGCCGACCCCTTCGGCCTCCTCGTCCACACCGCGGCGAGCCCCTCCTGCGGCCTCAACCTCGACGACGACCCACCCGGTAGCTTCGCCGTGCTTCGCGAATTCCTCCCCGTCGGGGCCAGCAACCCCCACGAGGCCACCGGAATCGCCGAGCGTGTCCCGGAGCGAGTCGGCGGATCCGTGCCCCACATCTCCAACCTCAAGAACGTCGGCTTCCTCACCTCCCCTGGAACCGGCGGCAAGGACTACGCCATCGCTGAGTTGCAGATCGAGGCCGGCGCCGAACTCGCCAAGCTGATTGTCTTCCGTTCTGGAACTCCCGCTTGGGCAGTGAGTCGTCTCATCCGCCCTGATATGCCCGGACGAAGTAATTTGCACTGGGGGTGGCACAACGATGATGTCATTTCGTTCGATGGGAACCTTTGGTTTGTTAATCTGTGGAGGGGTCTCATCAGCTGCAACCCGTTCAGTGATCATCCTGTTCTGCAGTTTCACCAGCTCCCAGAGCATATCCCGATAGAAGACCAAAACAAATCACAGCGTGATATTGAGGCTGATCGCTGTGTCAGGGTTAGCAAAGAGAGATTGCGCTACGTGGAGATAACCCGTGTACACAATGCTCCAGTTGAGTCAACTACTGTTGTTGTTTGGGTGCTGATCTGCGGTCCGAGAAGCATGTCGTATTGGAAGACCAATTGCATGGCATTTCTTGGGGACATTTGGGAGAATGAGACCTACAAGGCAACGGGTTTGCCCAACCAGGTCCCAATCCTTGCAGGCATACACCCCAGCAACCCTGATTTGGTTTACTTCTTTCTGGAGCATCACCTGTTTGGCGTCAATCTGTACAAGAAGATGGTTATTCACTTTGTCGATGAACATTACCAGCTTTTGCAGCCAATTGTTCGCTCCCGCTCGCTGCAGCCACTCTCTTGGCACCAAGTACAGCTTTGGAAGCTACCTCCGTCACTTCACGCAGGTTCAATAGAACTGTCAGCACAGCACGCTAGTGACTTAGGTAACCTCCACCTGAAGGCTGCTCAGCTACGGCGTCAAGAACATGCTTTAAAGAGACGTGAAAAGATGATTGAGATGCGAGAGGAATCAGTGCAAGGATTGCACAAATCACTTTTGGCACCCGAGGAAAAGAAGGACGACTCTCGCTGGGATAAGGTCCAGATCGTGATTCTTGCCGTACTGATATCTGGACTTTCCCTTCTGTTCCCATTCCTACCTTGGCTCCCCTATGAGTATCTCAGCACAATAGTGATAGCATTTAGCATTGTAGTGGGTTGCTGCTGCATTGCTCTGCCTTGTGCTCTTTTTGGCTCAAACAAGTGGCAGACTTGCTGTGGAGAGAGTGTTGCACGAGTAGGCTTCATGCTTTTTTCACTGTTTGTCTTGTACTGCCTGTATCGAATGGCACTTGATCCTACACTGGAGATGACTGGCCACTCTGCCCCTCCAGCTCCGGCTGACCCAGGGTTTGCATGGAAATTGATGAGGACCTACGAAGCACTTGCAGTTGTAGTAACATCGGGACAGGTCATCTCTTGGGTTTTGAGTTGTTGCTGTGGAAAGACATAG
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| Protein seq | MEEGSSSAAEELARGWVILDRVACVDDEEDPREVALNVAEPPRLSTLTVPAKFHALPSNPDELPYVAAADPFGLLVHTAASPSCGLNLDDDPPGSFAVLREFLPVGASNPHEATGIAERVPERVGGSVPHISNLKNVGFLTSPGTGGKDYAIAELQIEAGAELAKLIVFRSGTPAWAVSRLIRPDMPGRSNLHWGWHNDDVISFDGNLWFVNLWRGLISCNPFSDHPVLQFHQLPEHIPIEDQNKSQRDIEADRCVRVSKERLRYVEITRVHNAPVESTTVVVWVLICGPRSMSYWKTNCMAFLGDIWENETYKATGLPNQVPILAGIHPSNPDLVYFFLEHHLFGVNLYKKMVIHFVDEHYQLLQPIVRSRSLQPLSWHQVQLWKLPPSLHAGSIELSAQHASDLGNLHLKAAQLRRQEHALKRREKMIEMREESVQGLHKSLLAPEEKKDDSRWDKVQIVILAVLISGLSLLFPFLPWLPYEYLSTIVIAFSIVVGCCCIALPCALFGSNKWQTCCGESVARVGFMLFSLFVLYCLYRMALDPTLEMTGHSAPPAPADPGFAWKLMRTYEALAVVVTSGQVISWVLSCCCGKT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g20310 | LOC_Os06g20310.2 | Chr06 | 11669579 | 11673430 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGGAGGGGAGCTCGTCTGCGGCGGAGGAGCTGGCGCGGGGGTGGGTCATACTCGATCGCGTCGCGTGCGTGGACGACGAGGAAGATCCGCGGGAGGTCGCCCTCAACGTCGCCGAGCCGCCGCGTCTGTCGACGCTCACCGTGCCGGCCAAGTTCCACGCTCTCCCGAGCAACCCGGACGAGCTACCGTACGTCGCCGCCGCCGACCCCTTCGGCCTCCTCGTCCACACCGCGGCGAGCCCCTCCTGCGGCCTCAACCTCGACGACGACCCACCCGGTAGCTTCGCCGTGCTTCGCGAATTCCTCCCCGTCGGGGCCAGCAACCCCCACGAGGCCACCGGAATCGCCGAGCGTGTCCCGGAGCGAGTCGGCGGATCCGTGCCCCACATCTCCAACCTCAAGAACGTCGGCTTCCTCACCTCCCCTGGAACCGGCGGCAAGGACTACGCCATCGCTGAGTTGCAGATCGAGGCCGGCGCCGAACTCGCCAAGCTGATTGTCTTCCGTTCTGGAACTCCCGCTTGGGCAGTGAGTCGTCTCATCCGCCCTGATATGCCCGGACGAAGTAATTTGCACTGGGGGTGGCACAACGATGATGTCATTTCGTTCGATGGGAACCTTTGGTTTGTTAATCTGTGGAGGGGTCTCATCAGCTGCAACCCGTTCAGTGATCATCCTGTTCTGCAGTTTCACCAGCTCCCAGAGCATATCCCGATAGAAGACCAAAACAAATCACAGCGTGATATTGAGGCTGATCGCTGTGTCAGGGTTAGCAAAGAGAGATTGCGCTACGTGGAGATAACCCGTGTACACAATGCTCCAGTTGAGTCAACTACTGTTGTTGTTTGGGTGCTGATCTGCGGTCCGAGAAGCATGTCGTATTGGAAGACCAATTGCATGGCATTTCTTGGGGACATTTGGGAGAATGAGACCTACAAGGCAACGGGTTTGCCCAACCAGGTCCCAATCCTTGCAGGCATACACCCCAGCAACCCTGATTTGGTTTACTTCTTTCTGGAGCATCACCTGTTTGGCGTCAATCTGTACAAGAAGATGGTTATTCACTTTGTCGATGAACATTACCAGCTTTTGCAGCCAATTGTTCGCTCCCGCTCGCTGCAGCCACTCTCTTGGCACCAAGTACAGCTTTGGAAGCTACCTCCGTCACTTCACGCAGGTTCAATAGAACTGTCAGCACAGCACGCTAGTGACTTAGGTAACCTCCACCTGAAGGCTGCTCAGCTACGGCGTCAAGAACATGCTTTAAAGAGACGTGAAAAGATGATTGAGATGCGAGAGGAATCAGTGCAAGGATTGCACAAATCACTTTTGGCACCCGAGGAAAAGAAGGACGACTCTCGCTGGGATAAGGTCCAGATCGTGATTCTTGCCGTACTGATATCTGGACTTTCCCTTCTGTTCCCATTCCTACCTTGGCTCCCCTATGAGTATCTCAGCACAATAGTGATAGCATTTAGCATTGTAGTGGGTTGCTGCTGCATTGCTCTGCCTTGTGCTCTTTTTGGCTCAAACAAGTGGCAGACTTGCTGTGGAGAGAGTGTTGCACGAGTAGGCTTCATGCTTTTTTCACTGTTTGTCTTGTACTGCCTGTATCGAATGGCACTTGATCCTACACTGGAGATGACTGGCCACTCTGCCCCTCCAGCTCCGGCTGACCCAGGGTTTGCATGGAAATTGATGAGGACCTACGAAGCACTTGCAGTTGTAGTAACATCGGGACAGGTCATCTCTTGGGTTTTGAGTTGTTGCTGTGGAAAGACATAG
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| Protein seq | MEEGSSSAAEELARGWVILDRVACVDDEEDPREVALNVAEPPRLSTLTVPAKFHALPSNPDELPYVAAADPFGLLVHTAASPSCGLNLDDDPPGSFAVLREFLPVGASNPHEATGIAERVPERVGGSVPHISNLKNVGFLTSPGTGGKDYAIAELQIEAGAELAKLIVFRSGTPAWAVSRLIRPDMPGRSNLHWGWHNDDVISFDGNLWFVNLWRGLISCNPFSDHPVLQFHQLPEHIPIEDQNKSQRDIEADRCVRVSKERLRYVEITRVHNAPVESTTVVVWVLICGPRSMSYWKTNCMAFLGDIWENETYKATGLPNQVPILAGIHPSNPDLVYFFLEHHLFGVNLYKKMVIHFVDEHYQLLQPIVRSRSLQPLSWHQVQLWKLPPSLHAGSIELSAQHASDLGNLHLKAAQLRRQEHALKRREKMIEMREESVQGLHKSLLAPEEKKDDSRWDKVQIVILAVLISGLSLLFPFLPWLPYEYLSTIVIAFSIVVGCCCIALPCALFGSNKWQTCCGESVARVGFMLFSLFVLYCLYRMALDPTLEMTGHSAPPAPADPGFAWKLMRTYEALAVVVTSGQVISWVLSCCCGKT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g20310 | LOC_Os06g20310.3 | Chr06 | 11669579 | 11673430 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGGAGGGGAGCTCGTCTGCGGCGGAGGAGCTGGCGCGGGGGTGGGTCATACTCGATCGCGTCGCGTGCGTGGACGACGAGGAAGATCCGCGGGAGGTCGCCCTCAACGTCGCCGAGCCGCCGCGTCTGTCGACGCTCACCGTGCCGGCCAAGTTCCACGCTCTCCCGAGCAACCCGGACGAGCTACCGTACGTCGCCGCCGCCGACCCCTTCGGCCTCCTCGTCCACACCGCGGCGAGCCCCTCCTGCGGCCTCAACCTCGACGACGACCCACCCGGTAGCTTCGCCGTGCTTCGCGAATTCCTCCCCGTCGGGGCCAGCAACCCCCACGAGGCCACCGGAATCGCCGAGCGTGTCCCGGAGCGAGTCGGCGGATCCGTGCCCCACATCTCCAACCTCAAGAACGTCGGCTTCCTCACCTCCCCTGGAACCGGCGGCAAGGACTACGCCATCGCTGAGTTGCAGATCGAGGCCGGCGCCGAACTCGCCAAGCTGATTGTCTTCCGTTCTGGAACTCCCGCTTGGGCAGTGAGTCGTCTCATCCGCCCTGATATGCCCGGACGAAGTAATTTGCACTGGGGGTGGCACAACGATGATGTCATTTCGTTCGATGGGAACCTTTGGTTTGTTAATCTGTGGAGGGGTCTCATCAGCTGCAACCCGTTCAGTGATCATCCTGTTCTGCAGTTTCACCAGCTCCCAGAGCATATCCCGATAGAAGACCAAAACAAATCACAGCGTGATATTGAGGCTGATCGCTGTGTCAGGGTTAGCAAAGAGAGATTGCGCTACGTGGAGATAACCCGTGTACACAATGCTCCAGTTGAGTCAACTACTGTTGTTGTTTGGGTGCTGATCTGCGGTCCGAGAAGCATGTCGTATTGGAAGACCAATTGCATGGCATTTCTTGGGGACATTTGGGAGAATGAGACCTACAAGGCAACGGGTTTGCCCAACCAGGTCCCAATCCTTGCAGGCATACACCCCAGCAACCCTGATTTGGTTTACTTCTTTCTGGAGCATCACCTGTTTGGCGTCAATCTGTACAAGAAGATGGTTATTCACTTTGTCGATGAACATTACCAGCTTTTGCAGCCAATTGTTCGCTCCCGCTCGCTGCAGCCACTCTCTTGGCACCAAGTACAGCTTTGGAAGCTACCTCCGTCACTTCACGCAGGTTCAATAGAACTGTCAGCACAGCACGCTAGTGACTTAGGTAACCTCCACCTGAAGGCTGCTCAGCTACGGCGTCAAGAACATGCTTTAAAGAGACGTGAAAAGATGATTGAGATGCGAGAGGAATCAGTGCAAGGATTGCACAAATCACTTTTGGCACCCGAGGAAAAGAAGGACGACTCTCGCTGGGATAAGGTCCAGATCGTGATTCTTGCCGTACTGATATCTGGACTTTCCCTTCTGTTCCCATTCCTACCTTGGCTCCCCTATGAGTATCTCAGCACAATAGTGATAGCATTTAGCATTGTAGTGGGTTGCTGCTGCATTGCTCTGCCTTGTGCTCTTTTTGGCTCAAACAAGTGGCAGACTTGCTGTGGAGAGAGTGTTGCACGAGTAGGCTTCATGCTTTTTTCACTGTTTGTCTTGTACTGCCTGTATCGAATGGCACTTGATCCTACACTGGAGATGACTGGCCACTCTGCCCCTCCAGCTCCGGCTGACCCAGGGTTTGCATGGAAATTGATGAGGACCTACGAAGCACTTGCAGTTGTAGTAACATCGGGACAGAGTTGTTGCTGTGGAAAGACATAG
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| Protein seq | MEEGSSSAAEELARGWVILDRVACVDDEEDPREVALNVAEPPRLSTLTVPAKFHALPSNPDELPYVAAADPFGLLVHTAASPSCGLNLDDDPPGSFAVLREFLPVGASNPHEATGIAERVPERVGGSVPHISNLKNVGFLTSPGTGGKDYAIAELQIEAGAELAKLIVFRSGTPAWAVSRLIRPDMPGRSNLHWGWHNDDVISFDGNLWFVNLWRGLISCNPFSDHPVLQFHQLPEHIPIEDQNKSQRDIEADRCVRVSKERLRYVEITRVHNAPVESTTVVVWVLICGPRSMSYWKTNCMAFLGDIWENETYKATGLPNQVPILAGIHPSNPDLVYFFLEHHLFGVNLYKKMVIHFVDEHYQLLQPIVRSRSLQPLSWHQVQLWKLPPSLHAGSIELSAQHASDLGNLHLKAAQLRRQEHALKRREKMIEMREESVQGLHKSLLAPEEKKDDSRWDKVQIVILAVLISGLSLLFPFLPWLPYEYLSTIVIAFSIVVGCCCIALPCALFGSNKWQTCCGESVARVGFMLFSLFVLYCLYRMALDPTLEMTGHSAPPAPADPGFAWKLMRTYEALAVVVTSGQSCCCGKT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g20310 | LOC_Os06g20310.4 | Chr06 | 11669578 | 11673430 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGGAGGGGAGCTCGTCTGCGGCGGAGGAGCTGGCGCGGGGGTGGGTCATACTCGATCGCGTCGCGTGCGTGGACGACGAGGAAGATCCGCGGGAGGTCGCCCTCAACGTCGCCGAGCCGCCGCGTCTGTCGACGCTCACCGTGCCGGCCAAGTTCCACGCTCTCCCGAGCAACCCGGACGAGCTACCGTACGTCGCCGCCGCCGACCCCTTCGGCCTCCTCGTCCACACCGCGGCGAGCCCCTCCTGCGGCCTCAACCTCGACGACGACCCACCCGGTAGCTTCGCCGTGCTTCGCGAATTCCTCCCCGTCGGGGCCAGCAACCCCCACGAGGCCACCGGAATCGCCGAGCGTGTCCCGGAGCGAGTCGGCGGATCCGTGCCCCACATCTCCAACCTCAAGAACGTCGGCTTCCTCACCTCCCCTGGAACCGGCGGCAAGGACTACGCCATCGCTGAGTTGCAGATCGAGGCCGGCGCCGAACTCGCCAAGCTGATTGTCTTCCGTTCTGGAACTCCCGCTTGGGCAGTGAGTCGTCTCATCCGCCCTGATATGCCCGGACGAAGTAATTTGCACTGGGGGTGGCACAACGATGATGTCATTTCGTTCGATGGGAACCTTTGGTTTGTTAATCTGTGGAGGGGTCTCATCAGCTGCAACCCGTTCAGTGATCATCCTGTTCTGCAGTTTCACCAGCTCCCAGAGCATATCCCGATAGAAGACCAAAACAAATCACAGCGTGATATTGAGGCTGATCGCTGTGTCAGGGTTAGCAAAGAGAGATTGCGCTACGTGGAGATAACCCGTGTACACAATGCTCCAGTTGAGTCAACTACTGTTGTTGTTTGGGTGCTGATCTGCGGTCCGAGAAGCATGTCGTATTGGAAGACCAATTGCATGGCATTTCTTGGGGACATTTGGGAGAATGAGACCTACAAGGCAACGGGTTTGCCCAACCAGGTCCCAATCCTTGCAGGCATACACCCCAGCAACCCTGATTTGGTTTACTTCTTTCTGGAGCATCACCTGTTTGGCGTCAATCTGTACAAGAAGATGGTTATTCACTTTGTCGATGAACATTACCAGCTTTTGCAGCCAATTGTTCGCTCCCGCTCGCTGCAGCCACTCTCTTGGCACCAAGTACAGCTTTGGAAGCTACCTCCGTCACTTCACGCAGGTTCAATAGAACTGTCAGCACAGCACGCTAGTGACTTAGGTAACCTCCACCTGAAGGCTGCTCAGCTACGGCGTCAAGAACATGCTTTAAAGAGACGTGAAAAGATGATTGAGATGCGAGAGGAATCAGTGCAAGGATTGCACAAATCACTTTTGGCACCCGAGGAAAAGAAGGACGACTCTCGCTGGGATAAGGTCCAGATCGTGATTCTTGCCGTACTGATATCTGGACTTTCCCTTCTGTTCCCATTCCTACCTTGGCTCCCCTATGAGTATCTCAGCACAATAGTGATAGCATTTAGCATTGTAGTGGGTTGCTGCTGCATTGCTCTGCCTTGTGCTCTTTTTGGCTCAAACAAGTGGCAGACTTGCTGTGGAGAGAGTGTTGCACGACTCCGGCTGACCCAGGGTTTGCATGGAAATTGA
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| Protein seq | MEEGSSSAAEELARGWVILDRVACVDDEEDPREVALNVAEPPRLSTLTVPAKFHALPSNPDELPYVAAADPFGLLVHTAASPSCGLNLDDDPPGSFAVLREFLPVGASNPHEATGIAERVPERVGGSVPHISNLKNVGFLTSPGTGGKDYAIAELQIEAGAELAKLIVFRSGTPAWAVSRLIRPDMPGRSNLHWGWHNDDVISFDGNLWFVNLWRGLISCNPFSDHPVLQFHQLPEHIPIEDQNKSQRDIEADRCVRVSKERLRYVEITRVHNAPVESTTVVVWVLICGPRSMSYWKTNCMAFLGDIWENETYKATGLPNQVPILAGIHPSNPDLVYFFLEHHLFGVNLYKKMVIHFVDEHYQLLQPIVRSRSLQPLSWHQVQLWKLPPSLHAGSIELSAQHASDLGNLHLKAAQLRRQEHALKRREKMIEMREESVQGLHKSLLAPEEKKDDSRWDKVQIVILAVLISGLSLLFPFLPWLPYEYLSTIVIAFSIVVGCCCIALPCALFGSNKWQTCCGESVARLRLTQGLHGN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.165710 | 0.0 | 0.229624 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0307900 | RBH | 0.259176 | 0.0 | 0.854394 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0307900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012790 | RBH | 0.169621 | 0.0 | 2.269566 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0012620 | RBH | 0.0 | 0.0 | 0.312114 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0012690 | RBH | 0.000000 | 0.0 | 1.002098 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012740 | RBH | 0.033528 | 0.043947 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0012870 | RBH | 0.0 | 0.0 | 1.078435 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0190200 | RBH | 0.4035725 | 0.033049 | 4.903389 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0012330 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0186500 | RBH | 0.156241 | 0.0269225 | 4.8424675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012870 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0012740 | RBH | 0.134874 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0012530 | RBH | 1.404725 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0013010 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0012620 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G012490 | RBH | 0.166395 | 0.943951 | 1.448440 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012810 | RBH | 0.0 | 0.000000 | 0.845358 |
