Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g18010 | OGI:06029660 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:10479281-10480902 | ||||||||
| Gene Symbol | OsCGT, CGT | ||||||||||
| DNA seq | GCAGCAGCAGCACGCACACGGCACACCTACTCCCGCTTCACATCGCCAGGTGTTCGACCGAGGCCACCACCGGCAATGCCGAGCTCTGGCGACGCGGCGGGCAGGCGGCCGCATGTGGTGCTCATCCCGAGCGCCGGCATGGGCCACCTCGTCCCCTTCGGCCGCCTCGCCGTGGCGCTCTCCTCCGGCCACGGCTGCGACGTCTCCCTCGTCACGGTGCTCCCCACGGTGTCCACCGCGGAGTCGAAGCACCTCGACGCGCTGTTCGACGCGTTCCCGGCGGTGCGGCGGCTCGACTTCGAGCTCGCGCCGTTCGACGCGTCGGAGTTCCCCAGCGCCGACCCGTTCTTCCTCCGGTTCGAGGCCATGCGGCGGTCGGCGCCGCTGCTCGGCCCGCTCCTCACCGGCGCCGGCGCATCGGCGCTCGCCACGGACATCGCGCTGACATCCGTCGTCATACCCGTGGCGAAGGAGCAGGGCCTCCCGTGCCACATCCTCTTCACCGCCTCCGCCGCGATGCTCTCCCTCTGCGCCTACTTCCCCACATACCTCGACGCCAACGCTGGCGACGGCGGCGGCGTCGGCGACGTCGACATCCCCGGCGTGTACCGCATCCCCAAGGCCTCCATCCCGCAGGCGCTGCACGATCCCAACCACCTCTTCACCCGCCAGTTCGTCGCCAACGGCCGGAGCCTCACGAGCGCCGCCGGCATCCTCGTCAACACGTTCGACGCCTTGGAGCCGGAGGCCGTCGCGGCCCTGCAGCAGGGCAAGGTCGCCTCCGGCTTCCCGCCGGTGTTCGCCGTGGGGCCACTTCTCCCGGCGAGCAACCAGGCAAAAGATCCGCAGGCAAACTACATGGAGTGGCTCGACGCGCAGCCGGCGCGGTCGGTGGTGTACGTGAGCTTCGGCAGCCGCAAGGCCATCTCAGGGGAGCAGCTCAGGGAGCTCGCCGCCGGGCTGGAGACCAGCGGCCACAGGTTCCTGTGGGTGGTGAAGAGCACCGTCGTGGACAGGGACGACGCCGCCGAGCTCGGCGAGCTGCTCGGCGAGGGGTTCTTGAAGCGGGTGGAGAAGCGAGGCCTCGTCACCAAGGCATGGGTGGATCAGGAAGAGGTCCTGAAGCACGAGTCCGTGGCGCTGTTCGTGAGCCACTGCGGCTGGAACTCGGTGACGGAGGCGGCGGCGAGCGGCGTCCCGGTGCTGGCGCTGCCGAGGTTCGGCGACCAGCGGGTGAACTCCGGCGTGGTGGCGCGCGCCGGGCTCGGCGTGTGGGCGGACACCTGGAGCTGGGAGGGGGAAGCCGGGGTGATCGGCGCAGAGGAGATATCGGAGAAGGTGAAGGCGGCGATGGCGGACGAGGCGTTGCGTAGGAAGGCGGCGAGCCTCGCCAAGGCCGCCGCGAAGGCCGTCGCCGGCGGTGGATCGAGCCACCGTTGTCTGGTCGAGTTCGCGCGGCTGTGCCAAGGGGGAACATGTCGCACTAATTGAGTACTGAGACATGGGTTCTAATTTAAATAATTCGGATGGAATCCTTGTTACAGATTTTAAATTGGAATAAGAAATGAAGCCATATGAAATTTGGAAGAATTTTAAATTTAATCAGTGGATATGTTTTAGTG
More
|
||||||||||
| CDS seq | ATGCCGAGCTCTGGCGACGCGGCGGGCAGGCGGCCGCATGTGGTGCTCATCCCGAGCGCCGGCATGGGCCACCTCGTCCCCTTCGGCCGCCTCGCCGTGGCGCTCTCCTCCGGCCACGGCTGCGACGTCTCCCTCGTCACGGTGCTCCCCACGGTGTCCACCGCGGAGTCGAAGCACCTCGACGCGCTGTTCGACGCGTTCCCGGCGGTGCGGCGGCTCGACTTCGAGCTCGCGCCGTTCGACGCGTCGGAGTTCCCCAGCGCCGACCCGTTCTTCCTCCGGTTCGAGGCCATGCGGCGGTCGGCGCCGCTGCTCGGCCCGCTCCTCACCGGCGCCGGCGCATCGGCGCTCGCCACGGACATCGCGCTGACATCCGTCGTCATACCCGTGGCGAAGGAGCAGGGCCTCCCGTGCCACATCCTCTTCACCGCCTCCGCCGCGATGCTCTCCCTCTGCGCCTACTTCCCCACATACCTCGACGCCAACGCTGGCGACGGCGGCGGCGTCGGCGACGTCGACATCCCCGGCGTGTACCGCATCCCCAAGGCCTCCATCCCGCAGGCGCTGCACGATCCCAACCACCTCTTCACCCGCCAGTTCGTCGCCAACGGCCGGAGCCTCACGAGCGCCGCCGGCATCCTCGTCAACACGTTCGACGCCTTGGAGCCGGAGGCCGTCGCGGCCCTGCAGCAGGGCAAGGTCGCCTCCGGCTTCCCGCCGGTGTTCGCCGTGGGGCCACTTCTCCCGGCGAGCAACCAGGCAAAAGATCCGCAGGCAAACTACATGGAGTGGCTCGACGCGCAGCCGGCGCGGTCGGTGGTGTACGTGAGCTTCGGCAGCCGCAAGGCCATCTCAGGGGAGCAGCTCAGGGAGCTCGCCGCCGGGCTGGAGACCAGCGGCCACAGGTTCCTGTGGGTGGTGAAGAGCACCGTCGTGGACAGGGACGACGCCGCCGAGCTCGGCGAGCTGCTCGGCGAGGGGTTCTTGAAGCGGGTGGAGAAGCGAGGCCTCGTCACCAAGGCATGGGTGGATCAGGAAGAGGTCCTGAAGCACGAGTCCGTGGCGCTGTTCGTGAGCCACTGCGGCTGGAACTCGGTGACGGAGGCGGCGGCGAGCGGCGTCCCGGTGCTGGCGCTGCCGAGGTTCGGCGACCAGCGGGTGAACTCCGGCGTGGTGGCGCGCGCCGGGCTCGGCGTGTGGGCGGACACCTGGAGCTGGGAGGGGGAAGCCGGGGTGATCGGCGCAGAGGAGATATCGGAGAAGGTGAAGGCGGCGATGGCGGACGAGGCGTTGCGTAGGAAGGCGGCGAGCCTCGCCAAGGCCGCCGCGAAGGCCGTCGCCGGCGGTGGATCGAGCCACCGTTGTCTGGTCGAGTTCGCGCGGCTGTGCCAAGGGGGAACATGTCGCACTAATTGA
More
|
||||||||||
| Protein seq | MPSSGDAAGRRPHVVLIPSAGMGHLVPFGRLAVALSSGHGCDVSLVTVLPTVSTAESKHLDALFDAFPAVRRLDFELAPFDASEFPSADPFFLRFEAMRRSAPLLGPLLTGAGASALATDIALTSVVIPVAKEQGLPCHILFTASAAMLSLCAYFPTYLDANAGDGGGVGDVDIPGVYRIPKASIPQALHDPNHLFTRQFVANGRSLTSAAGILVNTFDALEPEAVAALQQGKVASGFPPVFAVGPLLPASNQAKDPQANYMEWLDAQPARSVVYVSFGSRKAISGEQLRELAAGLETSGHRFLWVVKSTVVDRDDAAELGELLGEGFLKRVEKRGLVTKAWVDQEEVLKHESVALFVSHCGWNSVTEAAASGVPVLALPRFGDQRVNSGVVARAGLGVWADTWSWEGEAGVIGAEEISEKVKAAMADEALRRKAASLAKAAAKAVAGGGSSHRCLVEFARLCQGGTCRTN |
||||||||||
| Function | UDP-glucose:2-hydroxyflavanone C-glucosyltransferase [UniProtKB/Swiss-Prot:Q5VMI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g18010 | LOC_Os06g18010.1 | Chr06 | 10479281 | 10480902 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCGAGCTCTGGCGACGCGGCGGGCAGGCGGCCGCATGTGGTGCTCATCCCGAGCGCCGGCATGGGCCACCTCGTCCCCTTCGGCCGCCTCGCCGTGGCGCTCTCCTCCGGCCACGGCTGCGACGTCTCCCTCGTCACGGTGCTCCCCACGGTGTCCACCGCGGAGTCGAAGCACCTCGACGCGCTGTTCGACGCGTTCCCGGCGGTGCGGCGGCTCGACTTCGAGCTCGCGCCGTTCGACGCGTCGGAGTTCCCCAGCGCCGACCCGTTCTTCCTCCGGTTCGAGGCCATGCGGCGGTCGGCGCCGCTGCTCGGCCCGCTCCTCACCGGCGCCGGCGCATCGGCGCTCGCCACGGACATCGCGCTGACATCCGTCGTCATACCCGTGGCGAAGGAGCAGGGCCTCCCGTGCCACATCCTCTTCACCGCCTCCGCCGCGATGCTCTCCCTCTGCGCCTACTTCCCCACATACCTCGACGCCAACGCTGGCGACGGCGGCGGCGTCGGCGACGTCGACATCCCCGGCGTGTACCGCATCCCCAAGGCCTCCATCCCGCAGGCGCTGCACGATCCCAACCACCTCTTCACCCGCCAGTTCGTCGCCAACGGCCGGAGCCTCACGAGCGCCGCCGGCATCCTCGTCAACACGTTCGACGCCTTGGAGCCGGAGGCCGTCGCGGCCCTGCAGCAGGGCAAGGTCGCCTCCGGCTTCCCGCCGGTGTTCGCCGTGGGGCCACTTCTCCCGGCGAGCAACCAGGCAAAAGATCCGCAGGCAAACTACATGGAGTGGCTCGACGCGCAGCCGGCGCGGTCGGTGGTGTACGTGAGCTTCGGCAGCCGCAAGGCCATCTCAGGGGAGCAGCTCAGGGAGCTCGCCGCCGGGCTGGAGACCAGCGGCCACAGGTTCCTGTGGGTGGTGAAGAGCACCGTCGTGGACAGGGACGACGCCGCCGAGCTCGGCGAGCTGCTCGGCGAGGGGTTCTTGAAGCGGGTGGAGAAGCGAGGCCTCGTCACCAAGGCATGGGTGGATCAGGAAGAGGTCCTGAAGCACGAGTCCGTGGCGCTGTTCGTGAGCCACTGCGGCTGGAACTCGGTGACGGAGGCGGCGGCGAGCGGCGTCCCGGTGCTGGCGCTGCCGAGGTTCGGCGACCAGCGGGTGAACTCCGGCGTGGTGGCGCGCGCCGGGCTCGGCGTGTGGGCGGACACCTGGAGCTGGGAGGGGGAAGCCGGGGTGATCGGCGCAGAGGAGATATCGGAGAAGGTGAAGGCGGCGATGGCGGACGAGGCGTTGCGTAGGAAGGCGGCGAGCCTCGCCAAGGCCGCCGCGAAGGCCGTCGCCGGCGGTGGATCGAGCCACCGTTGTCTGGTCGAGTTCGCGCGGCTGTGCCAAGGGGGAACATGTCGCACTAATTGA
More
|
|||||||
| Protein seq | MPSSGDAAGRRPHVVLIPSAGMGHLVPFGRLAVALSSGHGCDVSLVTVLPTVSTAESKHLDALFDAFPAVRRLDFELAPFDASEFPSADPFFLRFEAMRRSAPLLGPLLTGAGASALATDIALTSVVIPVAKEQGLPCHILFTASAAMLSLCAYFPTYLDANAGDGGGVGDVDIPGVYRIPKASIPQALHDPNHLFTRQFVANGRSLTSAAGILVNTFDALEPEAVAALQQGKVASGFPPVFAVGPLLPASNQAKDPQANYMEWLDAQPARSVVYVSFGSRKAISGEQLRELAAGLETSGHRFLWVVKSTVVDRDDAAELGELLGEGFLKRVEKRGLVTKAWVDQEEVLKHESVALFVSHCGWNSVTEAAASGVPVLALPRFGDQRVNSGVVARAGLGVWADTWSWEGEAGVIGAEEISEKVKAAMADEALRRKAASLAKAAAKAVAGGGSSHRCLVEFARLCQGGTCRTN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.508948 | 0.622929 | 0.378494 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0288300 | RBH | 0.772118 | 0.950192 | 1.508470 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0288300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0011840 | RBH | 0.0 | 1.641109 | 0.396627 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0011700 | RBH | 0.059806 | 0.0 | 0.807487 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0011760 | RBH | 0.263381 | 2.783955 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0011810 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0011820 | RBH | 0.605414 | 0.0 | 2.964898 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0170100 | RBH | 4.355122 | 0.2322365 | 0.212833 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0011350 | RBH | 0.0 | 0.0 | 0.173975 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0167100 | RBH | 14.521416 | 0.09787 | 1.367708 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0011940 | RBH | 0.109400 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0011780 | RBH | 0.0 | 1.938286 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0011640 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0012010 | RBH | 0.528409 | 0.0 | 0.221502 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011660 | RBH | 0.259881 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G011560 | RBH | 0.103012 | 0.584381 | 0.932571 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0011890 | RBH | 0.0 | 0.0 | 1.345853 |
