Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g17285 | OGI:06028420 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:10009622-10013501 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCTCCAAACTCGTCGACGTCTCCCTCCTCCTCCTCCTACCCCCACAGGGAAGGATCGACGCAACCAAGCAAGAATTGAGAACTTGTGTTGTTCTATGTCTCGTTCTTGCTGCGATTTGAAGTAATCGGGGATCAAAAATCGTTGTCAAGACTGAAGAATCTTGATTTTTTTTTTCAGTGCATAGGTATGTATATGTTCTTGCTGATGCCTGTGTTTTGGGATGAGATTTTTTTTTTTTTGTCGAATTCTGACGAAAGATTTGGTTCTTGGCGCGTGGCGCCGCGGCGGAATTCTAGTTGTAAGATTGTGTTTTGTTTTGGCGGAATTCTTGGTGCGTTTCGCGGCGGAGTTTGCCCGCCACGGGGGAGATCGGTTCTTGACGCGTGTTGCTGCTGCTCATCCATGGCAGGAGGAAGAAGAGGAGAAGCTGGGACGTTGCTCCTCACGCGGGTGATCTCGCACCGGCATGGTCTTTGCCTCGCCGGGAGGAAGAAGGCGTCGTCGCGGCGGGGATGGTCGATAGGGCGGCGGACGTGGTCATCGGGGTCACCGCCGGCGTCGCCGCGGCGGTGGCCGCGGCGGCGCTCGTGCTCCTCGCCATCTGCCTCTACCGGAGGCGGCGCGCCAGCGCCAGCGTCGCCGCCCCGGCGCGGTCGCCGGAGTCGTCCACCGCGACGCTGCGCGCCAACGGCAGCCTCAACTCCAGCGTGTCCCTCTCCGTCGCCTCCGACTGGGACCACCACCCGCCGCCGGCGAAGCGCGCCGCCGCGTTCTGGGCGTGGAGGGGCGGCGCCAACAACGGCAGCCACTCGCCGCCGCCGGTCTCCGTCTCCGGGATCCCAAAATACCATTACAAGTAATGCCACCTACTTACTCCCACATTAATCAACAACTCTTGTCATAATCAAAGTGGCCACTCACATGGTGATAAATATTATCCTCATCTGAAATTCTTGGTTCGATGTGATCATAATTCATACTCCATTTTGTCTGAATGTTTCGATGTCATGAATGTATTGTTGGTTTGGTTTGTTTCAGAGATCTGCAGAAGGCGACCAACAACTTCACCACGATTCTGGGGCAAGGATCGTTTGGTCCTGTGTACAAGGCTGTAATGGCCACCGGAGAAGTGGTTGCTGTAAAGGTGCTCGCGAGTGATTCAAGGCAAGGTGAAAGAGAGTTTCAGACAGAGGTATGAATGTTTGGTGGTTTTTCTTCTTTTCTTTGGAAAGGAAGTTTGGTGATTTTTCTGGCTCCAAAGTTCTGACGTTTTCTTTCATTTGTTAGAAGCAACTCTTTTATGTGGAAATTAGCTCTGAAGATTAGTTTACTAAGAAGGATACAATTAAGCATTGGCTGTGTTTGTTTGTTGTCACAGAATGACAGCTACTGTGTTTGTTCCAAATTAGATGTTGTGGTGAGACCCTCTCTTTGTAGTGTATGGACCATTGTTTTGGGGGTAATAGAGAAGTAAACTAAGGGACAAACCTTAGGCGGAGAAAATTTAGTGTACGAATATATAAATGTAATTGTTCACTTTTAGCTAATCCCTAGTATTGGCTATTATGGATATTACCTTCCCTAACAGAAAAAATGCTTGTGTTCTGTTAGGATTGTGTTGCTTGAGTGGTGATGATACATGATATGGGTAGACCAAGTGCAACTTACAATATCTTTAAACTTTGGAACTTAGTTGGTTATGAAGAATTTGACTTTGATAAACTGCAGCACAACCATGACTAATTGACTATATCTTCTTTGCAGGTAGCATTGCTTAGTAGGCTGCATCACAGAAATCTTGTTAATTTGGTTGGATATTGCGTGGATAAAGGCCAGCGCATTTTGATTTATGAGTTCATGAGCAACGGGAATTTAGCAAGCCTTTTGTATGGTAAGTCTACTTTTGGAAAATGAAATATAAACGAGAGAAGCCAAAGAAAATGACTTTTTTTTTAGATAATGCAAAGAAAATGACTATATAGTACTTCTACACAAAACGGATATAGTATGTGGTACATTACTAGGAATAACATTGGTCCTTGAATTCCAAATATAGGTTGGTCCTTGAATTCCAATTTTTCCTCCTAATAATGACCATGTCCTTTCAGATGATAATAAGCGGAGTTTGAGCTGGCAAGAAAGGCTACAAATTGCTCACGATGTAGCTCATGGCATTGAGTATTTACATGAAGGGGTACGGTTGATGGCTATTAAAAATGTACCTTTCTTGTTAATGACCTATTCATGCCAATTAATAATAAGCTATGACTATTTGTGCAGGCTGTTCCACCTGTTATTCACAGAGATCTAAAGTCTGCTAATATACTCTTGGATCATTCAATGAGGGCCAAGGTTAGAAAATTTAAGATGCACTTCATGTTAATCATTGCAAAAGCCTTTGTACTTCATAGGCACTTTTCAGTATGATTTCTGCCAGTTGTTTAACCAAACTCAAAATGAGTCTATAGTTCAGAGATCAACTGCACCAACTCAAAATGTTTTCTATGATGAGTCTATAGTTCAGAGATCAACTGCACCAACTCAAAATGTTTTCTGTAAAGATGCATCCATGCAACTGAAACAAAAAAGTTCATTCCTGAAAATGCCTGAAGTGAATATTTAAGTGTGGATTTGGTGGGTGCAGGTTGCTGACTTTGGTCTATCAAAGGAGGAAGTATATGATGGAAGGAAGTCAGGCCTCAAGGGCACCTATGGATACATGGATCCTGACTACATGTCCACCAGCAAGTTCACAAAGAAGAGCGATGTTTATAGTTTCGGCATAATACTTTTCGAACTCATTACCGCCATAAATCCACAACAAGGTCTCATGGAGTACATTGATCTAGTAAGTGAATTTTAACATGTTTTACAGTAACTCCAGACAAAATTGTAGAAGTCCTTCCAAATGGAAACTTTTTCAATGTAAAGTACTTCAAATTAAATGAATTGCTCACTTCTTATGTATGATGTATCCCTTTTTATGTGTGGTATAATTCCAGTCATGCACAGCATACAGTGTACAAAGGAGAAACCCAATGATCTTAAGAATGCACTAGCTGAAACACCAAATTTTTAATTTTCACCTGTTCAACTACTACCAAAGAGACATTTCCCCACTATTGCCATGTGCACCATGACATCAGATTATTATGTAATAAACAACATGGTTATTCAGAAACTATTATTCCTGTAAGATGACTTTACCTTTGCAGTGATAACAACTTGTGCACAAGCACCAATGTCATTGGTAAGTGTACTTATTATACATATACGGATATACCTCTTTCCAGGCAGCCATTGGAGGGGAAGGAAAGGCTGATTGGGATGAGATACTGGACAAGAACCTCATAGTGGGGAACATTGCTGAAGAGGTAAGGATCCTTGCTGATGTCGCCTACCGATGCGTTAACAAGAACCCGAAAAAGAGGCCCTGGATATCAGAGGTAACTCAGGCCATATCAAGAATAAGGCAGCTCCAGCTGATGAAACTCGACACACTGAATCTGCCGAGGAGCGAGACCAGGACTGTTCTGAGGAGGATTGAGCACCAGCATGTTGAGCTGACTGATCTTACCAGTATGAAAGAACTGACACCTATAACAGCTTGAACGAACTCTTATTCCCTCTAGGCTCTAATAACATGACCAGGTGAAATGTAAACAGAAATGAACTTCCACCTAGGTTTGAGGAGCCCTTGTCGTGTAAAACATCAATTAATTTTGCCCTTCTGAAGGTCTATTAGATGCCAATATTATAGGTCTTGCTAATTTGGATGATTTCTAACTTGGGCTTAAATAGTTGTAAATAGCATCAATTGGTAATGTGGACTCTGTAGCAGCAAATGGAAAGCAAGTCATAGATGATCTATCCAGATTGC
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| CDS seq | ATGGTCGATAGGGCGGCGGACGTGGTCATCGGGGTCACCGCCGGCGTCGCCGCGGCGGTGGCCGCGGCGGCGCTCGTGCTCCTCGCCATCTGCCTCTACCGGAGGCGGCGCGCCAGCGCCAGCGTCGCCGCCCCGGCGCGGTCGCCGGAGTCGTCCACCGCGACGCTGCGCGCCAACGGCAGCCTCAACTCCAGCGTGTCCCTCTCCGTCGCCTCCGACTGGGACCACCACCCGCCGCCGGCGAAGCGCGCCGCCGCGTTCTGGGCGTGGAGGGGCGGCGCCAACAACGGCAGCCACTCGCCGCCGCCGGTCTCCGTCTCCGGGATCCCAAAATACCATTACAAAGATCTGCAGAAGGCGACCAACAACTTCACCACGATTCTGGGGCAAGGATCGTTTGGTCCTGTGTACAAGGCTGTAATGGCCACCGGAGAAGTGGTTGCTGTAAAGGTGCTCGCGAGTGATTCAAGGCAAGGTGAAAGAGAGTTTCAGACAGAGGTAGCATTGCTTAGTAGGCTGCATCACAGAAATCTTGTTAATTTGGTTGGATATTGCGTGGATAAAGGCCAGCGCATTTTGATTTATGAGTTCATGAGCAACGGGAATTTAGCAAGCCTTTTGTATGATGATAATAAGCGGAGTTTGAGCTGGCAAGAAAGGCTACAAATTGCTCACGATGTAGCTCATGGCATTGAGTATTTACATGAAGGGGCTGTTCCACCTGTTATTCACAGAGATCTAAAGTCTGCTAATATACTCTTGGATCATTCAATGAGGGCCAAGGTTGCTGACTTTGGTCTATCAAAGGAGGAAGTATATGATGGAAGGAAGTCAGGCCTCAAGGGCACCTATGGATACATGGATCCTGACTACATGTCCACCAGCAAGTTCACAAAGAAGAGCGATGTTTATAGTTTCGGCATAATACTTTTCGAACTCATTACCGCCATAAATCCACAACAAGGTCTCATGGAGTACATTGATCTAGCAGCCATTGGAGGGGAAGGAAAGGCTGATTGGGATGAGATACTGGACAAGAACCTCATAGTGGGGAACATTGCTGAAGAGGTAAGGATCCTTGCTGATGTCGCCTACCGATGCGTTAACAAGAACCCGAAAAAGAGGCCCTGGATATCAGAGGTAACTCAGGCCATATCAAGAATAAGGCAGCTCCAGCTGATGAAACTCGACACACTGAATCTGCCGAGGAGCGAGACCAGGACTGTTCTGAGGAGGATTGAGCACCAGCATGTTGAGCTGACTGATCTTACCAGTATGAAAGAACTGACACCTATAACAGCTTGA
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| Protein seq | MVDRAADVVIGVTAGVAAAVAAAALVLLAICLYRRRRASASVAAPARSPESSTATLRANGSLNSSVSLSVASDWDHHPPPAKRAAAFWAWRGGANNGSHSPPPVSVSGIPKYHYKDLQKATNNFTTILGQGSFGPVYKAVMATGEVVAVKVLASDSRQGEREFQTEVALLSRLHHRNLVNLVGYCVDKGQRILIYEFMSNGNLASLLYDDNKRSLSWQERLQIAHDVAHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEVYDGRKSGLKGTYGYMDPDYMSTSKFTKKSDVYSFGIILFELITAINPQQGLMEYIDLAAIGGEGKADWDEILDKNLIVGNIAEEVRILADVAYRCVNKNPKKRPWISEVTQAISRIRQLQLMKLDTLNLPRSETRTVLRRIEHQHVELTDLTSMKELTPITA |
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| Function | Calcium/calmodulin-regulated receptor-like kinase 2 [UniProtKB/Swiss-Prot:Q9LFV3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g17285 | LOC_Os06g17285.1 | Chr06 | 10009622 | 10013465 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTCGATAGGGCGGCGGACGTGGTCATCGGGGTCACCGCCGGCGTCGCCGCGGCGGTGGCCGCGGCGGCGCTCGTGCTCCTCGCCATCTGCCTCTACCGGAGGCGGCGCGCCAGCGCCAGCGTCGCCGCCCCGGCGCGGTCGCCGGAGTCGTCCACCGCGACGCTGCGCGCCAACGGCAGCCTCAACTCCAGCGTGTCCCTCTCCGTCGCCTCCGACTGGGACCACCACCCGCCGCCGGCGAAGCGCGCCGCCGCGTTCTGGGCGTGGAGGGGCGGCGCCAACAACGGCAGCCACTCGCCGCCGCCGGTCTCCGTCTCCGGGATCCCAAAATACCATTACAAAGATCTGCAGAAGGCGACCAACAACTTCACCACGATTCTGGGGCAAGGATCGTTTGGTCCTGTGTACAAGGCTGTAATGGCCACCGGAGAAGTGGTTGCTGTAAAGGTGCTCGCGAGTGATTCAAGGCAAGGTGAAAGAGAGTTTCAGACAGAGGTAGCATTGCTTAGTAGGCTGCATCACAGAAATCTTGTTAATTTGGTTGGATATTGCGTGGATAAAGGCCAGCGCATTTTGATTTATGAGTTCATGAGCAACGGGAATTTAGCAAGCCTTTTGTATGATGATAATAAGCGGAGTTTGAGCTGGCAAGAAAGGCTACAAATTGCTCACGATGTAGCTCATGGCATTGAGTATTTACATGAAGGGGCTGTTCCACCTGTTATTCACAGAGATCTAAAGTCTGCTAATATACTCTTGGATCATTCAATGAGGGCCAAGGTTGCTGACTTTGGTCTATCAAAGGAGGAAGTATATGATGGAAGGAAGTCAGGCCTCAAGGGCACCTATGGATACATGGATCCTGACTACATGTCCACCAGCAAGTTCACAAAGAAGAGCGATGTTTATAGTTTCGGCATAATACTTTTCGAACTCATTACCGCCATAAATCCACAACAAGGTCTCATGGAGTACATTGATCTAGCAGCCATTGGAGGGGAAGGAAAGGCTGATTGGGATGAGATACTGGACAAGAACCTCATAGTGGGGAACATTGCTGAAGAGGTAAGGATCCTTGCTGATGTCGCCTACCGATGCGTTAACAAGAACCCGAAAAAGAGGCCCTGGATATCAGAGGTAACTCAGGCCATATCAAGAATAAGGCAGCTCCAGCTGATGAAACTCGACACACTGAATCTGCCGAGGAGCGAGACCAGGACTGTTCTGAGGAGGATTGAGCACCAGCATGTTGAGCTGACTGATCTTACCAGTATGAAAGAACTGACACCTATAACAGCTTGA
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| Protein seq | MVDRAADVVIGVTAGVAAAVAAAALVLLAICLYRRRRASASVAAPARSPESSTATLRANGSLNSSVSLSVASDWDHHPPPAKRAAAFWAWRGGANNGSHSPPPVSVSGIPKYHYKDLQKATNNFTTILGQGSFGPVYKAVMATGEVVAVKVLASDSRQGEREFQTEVALLSRLHHRNLVNLVGYCVDKGQRILIYEFMSNGNLASLLYDDNKRSLSWQERLQIAHDVAHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEVYDGRKSGLKGTYGYMDPDYMSTSKFTKKSDVYSFGIILFELITAINPQQGLMEYIDLAAIGGEGKADWDEILDKNLIVGNIAEEVRILADVAYRCVNKNPKKRPWISEVTQAISRIRQLQLMKLDTLNLPRSETRTVLRRIEHQHVELTDLTSMKELTPITA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g17285 | LOC_Os06g17285.2 | Chr06 | 10009623 | 10013501 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTCGATAGGGCGGCGGACGTGGTCATCGGGGTCACCGCCGGCGTCGCCGCGGCGGTGGCCGCGGCGGCGCTCGTGCTCCTCGCCATCTGCCTCTACCGGAGGCGGCGCGCCAGCGCCAGCGTCGCCGCCCCGGCGCGGTCGCCGGAGTCGTCCACCGCGACGCTGCGCGCCAACGGCAGCCTCAACTCCAGCGTGTCCCTCTCCGTCGCCTCCGACTGGGACCACCACCCGCCGCCGGCGAAGCGCGCCGCCGCGTTCTGGGCGTGGAGGGGCGGCGCCAACAACGGCAGCCACTCGCCGCCGCCGGTCTCCGTCTCCGGGATCCCAAAATACCATTACAAAGATCTGCAGAAGGCGACCAACAACTTCACCACGATTCTGGGGCAAGGATCGTTTGGTCCTGTGTACAAGGCTGTAATGGCCACCGGAGAAGTGGTTGCTGTAAAGGTGCTCGCGAGTGATTCAAGGCAAGGTGAAAGAGAGTTTCAGACAGAGGTAGCATTGCTTAGTAGGCTGCATCACAGAAATCTTGTTAATTTGGTTGGATATTGCGTGGATAAAGGCCAGCGCATTTTGATTTATGAGTTCATGAGCAACGGGAATTTAGCAAGCCTTTTGTATGATGATAATAAGCGGAGTTTGAGCTGGCAAGAAAGGCTACAAATTGCTCACGATGTAGCTCATGGCATTGAGTATTTACATGAAGGGGCTGTTCCACCTGTTATTCACAGAGATCTAAAGTCTGCTAATATACTCTTGGATCATTCAATGAGGGCCAAGGTTGCTGACTTTGGTCTATCAAAGGAGGAAGTATATGATGGAAGGAAGTCAGGCCTCAAGGGCACCTATGGATACATGGATCCTGACTACATGTCCACCAGCAAGTTCACAAAGAAGAGCGATGTTTATAGTTTCGGCATAATACTTTTCGAACTCATTACCGCCATAAATCCACAACAAGGTCTCATGGAGTACATTGATCTAGCAGCCATTGGAGGGGAAGGAAAGGCTGATTGGGATGAGATACTGGACAAGAACCTCATAGTGGGGAACATTGCTGAAGAGGTAAGGATCCTTGCTGATGTCGCCTACCGATGCGTTAACAAGAACCCGAAAAAGAGGCCCTGGATATCAGAGGTAACTCAGGCCATATCAAGAATAAGGCAGCTCCAGCTGATGAAACTCGACACACTGAATCTGCCGAGGAGCGAGACCAGGACTGTTCTGAGGAGGATTGAGCACCAGCATGTTGAGCTGACTGATCTTACCAGTATGAAAGAACTGACACCTATAACAGCTTGA
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| Protein seq | MVDRAADVVIGVTAGVAAAVAAAALVLLAICLYRRRRASASVAAPARSPESSTATLRANGSLNSSVSLSVASDWDHHPPPAKRAAAFWAWRGGANNGSHSPPPVSVSGIPKYHYKDLQKATNNFTTILGQGSFGPVYKAVMATGEVVAVKVLASDSRQGEREFQTEVALLSRLHHRNLVNLVGYCVDKGQRILIYEFMSNGNLASLLYDDNKRSLSWQERLQIAHDVAHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEVYDGRKSGLKGTYGYMDPDYMSTSKFTKKSDVYSFGIILFELITAINPQQGLMEYIDLAAIGGEGKADWDEILDKNLIVGNIAEEVRILADVAYRCVNKNPKKRPWISEVTQAISRIRQLQLMKLDTLNLPRSETRTVLRRIEHQHVELTDLTSMKELTPITA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.002789 | 1.015613 | 0.750610 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0283300 | RBH | 1.593596 | 1.316971 | 2.855363 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g14030 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0283300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0011540 | RBH | 0.617775 | 21.276581 | 3.584856 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0011450 | RBH | 0.431655 | 5.955346 | 2.191779 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0011450 | RBH | 1.995548 | 16.646343 | 6.985229 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0011470 | RBH | 0.251351 | 0.236315 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0011570 | RBH | 12.583279 | 10.443432 | 4.500410 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0164200 | RBH | 5.466356 | 18.528369 | 5.7578535 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0011070 | RBH | 0.357849 | 0.428817 | 0.243008 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0161400 | RBH | 6.030105 | 19.499912 | 6.86395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0011560 | RBH | 0.559069 | 0.151544 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0011410 | RBH | 1.143078 | 3.916486 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0011370 | RBH | 2.524657 | 13.590267 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0011570 | RBH | 0.000000 | 0.128486 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011340 | RBH | 0.119770 | 9.799588 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G011250 | RBH | 0.835419 | 0.693061 | 0.632984 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0011570 | RBH | 1.322990 | 22.623337 | 3.381961 |
