Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g16600 | OGI:06027440 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:9543521-9544929 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAATGACAAAACATAGGATTATATTCCTGATTTAACAGCTCTAGAATTTCAGCCGGAGCGCATAACCTCCACTCCGCTTCAACTCCTGAGGTCATAACCATCTGAGCTAACATATGAGCTATCCTATTTGAATCTCTCTTCACTTTATGCACTTGCACCTGCAGCAAGCATTGCATTGCCACTCTTATCTCGGCAATTATACCTCCCCATTCTGCTCTTGACGCTTGTGTTATATTCAGTCCAGCAACGACATCGGCATTGTCAGATTCAAGTATTATTGGCATATGTATCCAGTTCATCGCCAACCGAACGCCCTCCAGGAAAGCCAAAGCTTCAGCCAGGGTAGCAGAGCTGCATCTTGGAAGCTTCTTACAAGCTGCAAGAAGAACCAGGCCCCAGCAATCTCTGACAATTATTCCAGCACAAGCATCACCCGTCTCCTTCCTGAATCCAGCATCAATGTTTACCTTAGCCACACCTTCCGGTGGAGGTTCCCATTTAGCAATTTGCACAGCACTGGCATGCACTTTTTCTGTCAGTTCCTCAAACATTGGTCGCTTGCCCTTCTTGTCATCAATCTGTTGTCGGACAGGCAACATACATGCTTCATAGTTAACCAAGAAGTTGATAGAGACAGCTATAGGACTGGAATCAGCACCATGTACCATCTCATTTCGAAGATGCCATGCACGCCAAAGCATATATAACGTGTGCGCTCTCTCAACTTCATCAGCTCCATCCAAGAGCAACAGTAGCCGATCCGGTCCAGTTCTAGCAACTTGATTTCAGGAGGTAATCGCCAAACCTCTCTGATAGCCTCTCTAAGTGCTTTTGCTTTTGTGCATTCAACCGTTGCATGAAAACCATCCTCCTCAGCTGATCCGCAAATTTGGCAGATACTTTGTCTTTCAATTTTTCTCCTGCACTTGTTTACCCAAGTTGGTAACCTGTCAAGTGCTAACTTCCAGGCAAAAATCTTGATTTTAGCCTGTACCCTTGTCTTCCACAGAGCCAACCATAGTTTCCTTTCCCCTGATGTTGCTGTGCTTGAAGATGCCTCCACAACATTTTTAGATAGGTTCCAGGCCAACCTGTAAGCACTCTTCACAATAAATAACCCTGTTTTTTCAAGATGCCAAGCAGGGAAATCTTCAGGTTGTTGATTGGACAGCCTAATCTTTAAAACCTCGTCAGCATCTTCCTTGTGCATTACATGGCGGATCAAGTTCTCATTCCAGCTTCTGGAGCCTGCATCCATTAGATCTTTAACATACATTAATCTATTCCTCACCCTCTTTTCCAGAGTTATAAGCCGGTCATCCCATTTGTGTCTCCAGATCTTGATGTTATCACCATTTCCAACCCTCCAAATTATTCCTTGATATAATGCCCTATGCTTAATGGACAT
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| CDS seq | ATGTCCATTAAGCATAGGGCATTATATCAAGGAATAATTTGGAGGGTTGGAAATGGTGATAACATCAAGATCTGGAGACACAAATGGGATGACCGGCTTATAACTCTGGAAAAGAGGGTGAGGAATAGATTAATGTATGTTAAAGATCTAATGGATGCAGGCTCCAGAAGCTGGAATGAGAACTTGATCCGCCATGTAATGCACAAGGAAGATGCTGACGAGGTTTTAAAGATTAGGCTGTCCAATCAACAACCTGAAGATTTCCCTGCTTGGCATCTTGAAAAAACAGGGTTATTTATTGTGAAGAGTGCTTACAGGTTGGCCTGGAACCTATCTAAAAATGTTGTGGAGGCATCTTCAAGCACAGCAACATCAGGGGAAAGGAAACTATGGTTGGCTCTGTGGAAGACAAGGGTACAGGCTAAAATCAAGATTTTTGCCTGGAAGTTAGCACTTGACAGGTTACCAACTTGGGTAAACAAGTGCAGGAGAAAAATTGAAAGACAAAGTATCTGCCAAATTTGCGGATCAGCTGAGGAGGATGGTTTTCATGCAACGGTTGAATGCACAAAAGCAAAAGCACTTAGAGAGGCTATCAGAGAGGTTTGGCGATTACCTCCTGAAATCAAGTTGCTAGAACTGGACCGGATCGGCTACTGTTGCTCTTGGATGGAGCTGATGAAGTTGAGAGAGCGCACACGTTATATATGCTTTGGCGTGCATGGCATCTTCGAAATGAGATGGAAGGAGACGGGTGATGCTTGTGCTGGAATAATTGTCAGAGATTGCTGGGGCCTGGTTCTTCTTGCAGCTTGTAAGAAGCTTCCAAGATGCAGCTCTGCTACCCTGGCTGAAGCTTTGGCTTTCCTGGAGGGCGTTCGGTTGGCGATGAACTGGATACATATGCCAATAATACTTGAATCTGACAATGCCGATGTCGTTGCTGGACTGAATATAACACAAGCGTCAAGAGCAGAATGGGGAGGTATAATTGCCGAGATAAGAGTGGCAATGCAATGCTTGCTGCAGGTGCAAGTGCATAAAGTGAAGAGAGATTCAAATAGGATAGCTCATATGTTAGCTCAGATGGTTATGACCTCAGGAGTTGAAGCGGAGTGGAGGTTATGCGCTCCGGCTGAAATTCTAGAGCTGTTAAATCAGGAATATAATCCTATGTTTTGTCATTAA
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| Protein seq | MSIKHRALYQGIIWRVGNGDNIKIWRHKWDDRLITLEKRVRNRLMYVKDLMDAGSRSWNENLIRHVMHKEDADEVLKIRLSNQQPEDFPAWHLEKTGLFIVKSAYRLAWNLSKNVVEASSSTATSGERKLWLALWKTRVQAKIKIFAWKLALDRLPTWVNKCRRKIERQSICQICGSAEEDGFHATVECTKAKALREAIREVWRLPPEIKLLELDRIGYCCSWMELMKLRERTRYICFGVHGIFEMRWKETGDACAGIIVRDCWGLVLLAACKKLPRCSSATLAEALAFLEGVRLAMNWIHMPIILESDNADVVAGLNITQASRAEWGGIIAEIRVAMQCLLQVQVHKVKRDSNRIAHMLAQMVMTSGVEAEWRLCAPAEILELLNQEYNPMFCH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g16600 | LOC_Os06g16600.1 | Chr06 | 9543521 | 9544929 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCCATTAAGCATAGGGCATTATATCAAGGAATAATTTGGAGGGTTGGAAATGGTGATAACATCAAGATCTGGAGACACAAATGGGATGACCGGCTTATAACTCTGGAAAAGAGGGTGAGGAATAGATTAATGTATGTTAAAGATCTAATGGATGCAGGCTCCAGAAGCTGGAATGAGAACTTGATCCGCCATGTAATGCACAAGGAAGATGCTGACGAGGTTTTAAAGATTAGGCTGTCCAATCAACAACCTGAAGATTTCCCTGCTTGGCATCTTGAAAAAACAGGGTTATTTATTGTGAAGAGTGCTTACAGGTTGGCCTGGAACCTATCTAAAAATGTTGTGGAGGCATCTTCAAGCACAGCAACATCAGGGGAAAGGAAACTATGGTTGGCTCTGTGGAAGACAAGGGTACAGGCTAAAATCAAGATTTTTGCCTGGAAGTTAGCACTTGACAGGTTACCAACTTGGGTAAACAAGTGCAGGAGAAAAATTGAAAGACAAAGTATCTGCCAAATTTGCGGATCAGCTGAGGAGGATGGTTTTCATGCAACGGTTGAATGCACAAAAGCAAAAGCACTTAGAGAGGCTATCAGAGAGGTTTGGCGATTACCTCCTGAAATCAAGTTGCTAGAACTGGACCGGATCGGCTACTGTTGCTCTTGGATGGAGCTGATGAAGTTGAGAGAGCGCACACGTTATATATGCTTTGGCGTGCATGGCATCTTCGAAATGAGATGGAAGGAGACGGGTGATGCTTGTGCTGGAATAATTGTCAGAGATTGCTGGGGCCTGGTTCTTCTTGCAGCTTGTAAGAAGCTTCCAAGATGCAGCTCTGCTACCCTGGCTGAAGCTTTGGCTTTCCTGGAGGGCGTTCGGTTGGCGATGAACTGGATACATATGCCAATAATACTTGAATCTGACAATGCCGATGTCGTTGCTGGACTGAATATAACACAAGCGTCAAGAGCAGAATGGGGAGGTATAATTGCCGAGATAAGAGTGGCAATGCAATGCTTGCTGCAGGTGCAAGTGCATAAAGTGAAGAGAGATTCAAATAGGATAGCTCATATGTTAGCTCAGATGGTTATGACCTCAGGAGTTGAAGCGGAGTGGAGGTTATGCGCTCCGGCTGAAATTCTAGAGCTGTTAAATCAGGAATATAATCCTATGTTTTGTCATTAA
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| Protein seq | MSIKHRALYQGIIWRVGNGDNIKIWRHKWDDRLITLEKRVRNRLMYVKDLMDAGSRSWNENLIRHVMHKEDADEVLKIRLSNQQPEDFPAWHLEKTGLFIVKSAYRLAWNLSKNVVEASSSTATSGERKLWLALWKTRVQAKIKIFAWKLALDRLPTWVNKCRRKIERQSICQICGSAEEDGFHATVECTKAKALREAIREVWRLPPEIKLLELDRIGYCCSWMELMKLRERTRYICFGVHGIFEMRWKETGDACAGIIVRDCWGLVLLAACKKLPRCSSATLAEALAFLEGVRLAMNWIHMPIILESDNADVVAGLNITQASRAEWGGIIAEIRVAMQCLLQVQVHKVKRDSNRIAHMLAQMVMTSGVEAEWRLCAPAEILELLNQEYNPMFCH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g13430 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0006470 | SBH | 0.0 | 0.0 | 0.482579 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0006470 | SBH | 0.0 | 0.000000 | 3.545455 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0158200 | RBH | 0 | 0 | 0.345736 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0155000 | RBH | 0 | 0 | 0.655943 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0006690 | SBH | 0.0 | 0.088564 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0013350 | SBH | 0.0 | 3.392695 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G006310 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0006590 | SBH | 0.0 | 0.0 | 0.766732 |
