Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0006690 | OGI:06013670 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:4956471-4957885 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgaacgacaatgcacctcaatgcgggaagtgcagccgtatgatggaaaactacgaccacaccaactccaacagccgagattgtacctgcgacaagtgccatttccttctggccggctacagctgcccttacgcttcctgcaaatacatgatccacaaggtatgccccgtgccgccggcaagtgtacagggcggttccgcctcccagtcccaagacagcggccctccctgcgggctgtgcggtcgtttgacgtccatctacgactacaccaactccacctgcagcaaatgctactgtgacatcgacaactgcgggcttcttctcgccggctacatcgtctacggatgccttccctgcagatacgctgtccacaaggtctgccccaagggtcctcttcgcaacgaagtaatcaacggagcggtcagaggaacggtcagcggagtgatcggctgcattttcagcgggttattagccgcaagcggcgccagctccaattgacgaggaaagagcactttggaaacatatatggtcttttctctcaaaaaaaaaacatatatggtcagctaatgttcctcagaaagtccgtatttttgcttggcgtctggcaagcgagggattggccactcaactcaataagcaccgacggcgtataattaaaaatccagcttgcgaaatatgtggtgcccctgcaaaagatggattccatgccaatgtcgcctgtactaagtcaatagcactgagagcagagctcaggaagtgttggagattaccaccagaggaagaatttgtgcaatctggaccggactggctgttattactgctagatcacactgattcgcatacgagatccctcacgcacctgatgctgtggcgggtgtggttcctgaggaatgatgcggttcattgtcatggcaaaaattcagtttgtggatcggtgcagtttctgcagcactacgcggagacgttgttgctcacccgacaaaaagcggatgatccaaaaggcaagcagattgcccagcatatgggccaacagaagccaaattcagataaagaactgaagaaggagcataaacaacactggaaaccaccaccagtaggatgggcaaaaatcaatgttgatggtgcatttacagttgaagatggacgatgcggtcttgggatagttatcagaaattcagaagggaaagtcttgctctcttcctggcgtttcatcaggcaatgcaggacagcagaggaggcggaagtgatggcgtgctgcgaaggcctcaaacttgcttgtgctctagtggcaaataggctagcaagcaatactcaggaaagctctctttcccttggaaaaaaaaaagaaagaagaccgacacatttaatgcttatgtatatgacggaaaatttaaaagtttgacgaaaaaatt
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| CDS seq | atggcgaacgacaatgcacctcaatgcgggaagtgcagccgtatgatggaaaactacgaccacaccaactccaacagccgagattgtacctgcgacaagtgccatttccttctggccggctacagctgcccttacgcttcctgcaaatacatgatccacaaggtatgccccgtgccgccggcaagtgtacagggcggttccgcctcccagtcccaagacagcggccctccctgcgggctgtgcggtcgtttgacgtccatctacgactacaccaactccacctgcagcaaatgctactgtgacatcgacaactgcgggcttcttctcgccggctacatcgtctacggatgccttccctgcagatacgctgtccacaaggtctgccccaagggtcctcttcgcaacgaagtaatcaacggagcggtcagaggaacggtcagcggagtgatcggctgcattttcagcggccgcaagcggcgccagctccaattgacgaggaaagagcactttggaaacatatatgctaatgttcctcagaaagtccgtatttttgcttggcgtctggcaagcgagggattggccactcaactcaataagcaccgacggcgtataattaaaaatccagcttgcgaaatatgtggtgcccctgcaaaagatggattccatgccaatgtcgcctgtactaagtcaatagcactgagagcagagctcaggaagtgttggagattaccaccagaggaagaatttgtgcaatctggaccggactggctgttattactgctagatcacactgattcgcatacgagatccctcacgcacctgatgctgtggcgggtgtggttcctgaggaatgatgcggttcattgtcatggcaaaaattcagtttgtggatcggtgcagtttctgcagcactacgcggagacgttgttgctcacccgacaaaaagcggatgatccaaaaggcaagcagattgcccagcatatgggccaacagaagccaaattcagataaagaactgaagaaggagcataaacaacactggaaaccaccaccagtaggatgggcaaaaatcaatgttgatggtgcatttacagttgaagatggacgatgcggtcttgggatagttatcagaaattcagaagggaaagtcttgctctcttcctggcgtttcatcaggcaatgcaggacagcagaggaggcggaagtgatggcgtgctgcgaaggcctcaaacttgcttgtgctctagtggcaaataggctagcaagcaatactcaggaaagctctctttcccttggaaaaaaaaaagaaagaagaccgacacatttaatgcttatgtatatgacggaaaatttaaaagtttga
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| Protein seq | MANDNAPQCGKCSRMMENYDHTNSNSRDCTCDKCHFLLAGYSCPYASCKYMIHKVCPVPPASVQGGSASQSQDSGPPCGLCGRLTSIYDYTNSTCSKCYCDIDNCGLLLAGYIVYGCLPCRYAVHKVCPKGPLRNEVINGAVRGTVSGVIGCIFSGRKRRQLQLTRKEHFGNIYANVPQKVRIFAWRLASEGLATQLNKHRRRIIKNPACEICGAPAKDGFHANVACTKSIALRAELRKCWRLPPEEEFVQSGPDWLLLLLDHTDSHTRSLTHLMLWRVWFLRNDAVHCHGKNSVCGSVQFLQHYAETLLLTRQKADDPKGKQIAQHMGQQKPNSDKELKKEHKQHWKPPPVGWAKINVDGAFTVEDGRCGLGIVIRNSEGKVLLSSWRFIRQCRTAEEAEVMACCEGLKLACALVANRLASNTQESSLSLGKKKERRPTHLMLMYMTENLKV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0006690 | OsLima_06g0006690.01 | Chr06 | 4956471 | 4957885 | + | NAM | ||
| CDS seq | atggcgaacgacaatgcacctcaatgcgggaagtgcagccgtatgatggaaaactacgaccacaccaactccaacagccgagattgtacctgcgacaagtgccatttccttctggccggctacagctgcccttacgcttcctgcaaatacatgatccacaaggtatgccccgtgccgccggcaagtgtacagggcggttccgcctcccagtcccaagacagcggccctccctgcgggctgtgcggtcgtttgacgtccatctacgactacaccaactccacctgcagcaaatgctactgtgacatcgacaactgcgggcttcttctcgccggctacatcgtctacggatgccttccctgcagatacgctgtccacaaggtctgccccaagggtcctcttcgcaacgaagtaatcaacggagcggtcagaggaacggtcagcggagtgatcggctgcattttcagcggccgcaagcggcgccagctccaattgacgaggaaagagcactttggaaacatatatgctaatgttcctcagaaagtccgtatttttgcttggcgtctggcaagcgagggattggccactcaactcaataagcaccgacggcgtataattaaaaatccagcttgcgaaatatgtggtgcccctgcaaaagatggattccatgccaatgtcgcctgtactaagtcaatagcactgagagcagagctcaggaagtgttggagattaccaccagaggaagaatttgtgcaatctggaccggactggctgttattactgctagatcacactgattcgcatacgagatccctcacgcacctgatgctgtggcgggtgtggttcctgaggaatgatgcggttcattgtcatggcaaaaattcagtttgtggatcggtgcagtttctgcagcactacgcggagacgttgttgctcacccgacaaaaagcggatgatccaaaaggcaagcagattgcccagcatatgggccaacagaagccaaattcagataaagaactgaagaaggagcataaacaacactggaaaccaccaccagtaggatgggcaaaaatcaatgttgatggtgcatttacagttgaagatggacgatgcggtcttgggatagttatcagaaattcagaagggaaagtcttgctctcttcctggcgtttcatcaggcaatgcaggacagcagaggaggcggaagtgatggcgtgctgcgaaggcctcaaacttgcttgtgctctagtggcaaataggctagcaagcaatactcaggaaagctctctttcccttggaaaaaaaaaagaaagaagaccgacacatttaatgcttatgtatatgacggaaaatttaaaagtttga
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| Protein seq | MANDNAPQCGKCSRMMENYDHTNSNSRDCTCDKCHFLLAGYSCPYASCKYMIHKVCPVPPASVQGGSASQSQDSGPPCGLCGRLTSIYDYTNSTCSKCYCDIDNCGLLLAGYIVYGCLPCRYAVHKVCPKGPLRNEVINGAVRGTVSGVIGCIFSGRKRRQLQLTRKEHFGNIYANVPQKVRIFAWRLASEGLATQLNKHRRRIIKNPACEICGAPAKDGFHANVACTKSIALRAELRKCWRLPPEEEFVQSGPDWLLLLLDHTDSHTRSLTHLMLWRVWFLRNDAVHCHGKNSVCGSVQFLQHYAETLLLTRQKADDPKGKQIAQHMGQQKPNSDKELKKEHKQHWKPPPVGWAKINVDGAFTVEDGRCGLGIVIRNSEGKVLLSSWRFIRQCRTAEEAEVMACCEGLKLACALVANRLASNTQESSLSLGKKKERRPTHLMLMYMTENLKV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.088564 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g09520 | RBH | 0.0 | 0.0 | 0.151269 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0006640 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0006470 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0006470 | RBH | 0.0 | 0.0 | 0.482579 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0006580 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0006470 | RBH | 0.0 | 0.000000 | 3.545455 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0080800 | RBH | 0.0180245 | 0.119535 | 0.1093375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0006320 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0080600 | RBH | 0.021279 | 0.0247315 | 0.3442195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0006540 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0006580 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0027930 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0006470 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G006310 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0006590 | RBH | 0.0 | 0.0 | 0.766732 |
