Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g11830 | OGI:06017740 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:6258432-6261359 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAATTTTCTATTTCGGTTCCTTCGTGGCTTGGAAGAGTAGCTTTAATTCTGCGTTCCTTCATGGCTTGAAAGCGGTTTATAATATCACACTCCTTGACTTTCAAAAACATCTCACGCTCAATAAATGTGACCAAGCAATCATTCAAGTATTGATCCCCCATCCTGTTTCTCAATTTATTCTTCACATAATTCATGGCAGAAAATATTCTTTCAACACTAGCTGTTGCTACTGGAAGTACCAGAACCAATTTGAGAAGCTTGTAAACAATCTCATGTCTATTGTGCAATTTTGTTTCAACAATCATAATGGAAAGATTAGCAAGATTTTTTACTTTTCTAAACCTTTCATCTATACGCATCTCAGTGAGGAAGAGTTTCAATGCTGATGGAAGATGGTTCATCTCTGTGCTTGAGAAATCATTAGGATAAAACCGTGCAAGCTTAATCAACTTATCTTTGTCCCAACTAGCAAAGTTATCTATAGGACTAAATGCAGCCATACAAAGGAGCAAATCTGTGTTTACCTCATCAAACCGTTCATTAAGCTCTTGTAGTTGTCTATCAATGACACTTAGAAACATGTCAACATGGAAGCGATGCATATTCTTGATTTTAATAAAGAACCTCCTATCTCTTCCAACCGGCCGATAGAAAGAGTCCATATCAGGGATCTTGATCTTATGCTTCACACAAAAAGATTGCACTTCTTGAAGAAAATCATCCCATCCAGGATCCTCGCGTAATTGCTGCAATTGAAACTTTGTCAATAAAATCAGTCCTACTGCATTAACAATGTCTTGATCCCTCTTCTGCAAAGCATGATTCAAGTCAGATGTGAACCCAAGTACTGTTTGCATCAAGTGTGCCATAAAAACAAACTCAAATGATTGGAATATTGTCAACACTGTTTGTGCATTTGCACATTCTGCACCAAAAGAGCGATCCTTGCCAACCATTATAAGAACTTTTTGAATTGAAGGATACAAAGATAGGACATGCATAACAGTTTTATAGTGAGATCCCCAACGAGTATCTGCTGGCCTGCCCAAACCCATTTCTTGATTCAAACCCTTTCCAGTTTCAATGTCACCCAAATCTAGTTCTTCTACAATTCTTTGAGCTTGTGCAACTCTAAGCATTTCTGTCTTCTTACAAGAATTCCCAAGAAGATTTAACAAAAATCTAAGTTGCTCAAAGAACCACACACAATCTGGGTTTTCCTTAGCAACAGCCACAAGTGTTAATTGGAGTTGATGTGCAAAGCAATGGACATAATAGGCAGAAGGGCACTCATCCATAATCAATTTCTTTAGTCCATTAGCATGACCCTTCATGTTACTAGCACCGTCATAGCCTTGCCCACGGACCTTAGACAAGCTCAAGGAATGCTCCATAAGCAATGATTCAATTGCAGCTTTAAGTGTCAAGGAAGTAGTATTTTCAACATGAACAACACCAAGGAACCTCTCAACTACCCTTCCTTTTTTATCAACATATCTCAAACAAAGAGCCAACTGTTCTTTTTGGTACACATCACTAGATTCATCGGCAAGTATTGCAAAATATTCATCACCAAGGTCTTCCATGATAAGCTTAGTAGTTTCTTTGGCACAACAATTAGCTATCTGTTTTTGTATTTCGGGAGCAGTCAACTTACAATTCTTTGGAGCATTATTCAAAACCACCTTACCAACTTCTTCAAAGTTTTCTGCTAGCATACTCAACATCTCAAGGAAATTTCCTTTATTAAGTGACTTTTCACTTTCATAATGTCCACGGGCAGCCAAACCTTGCCTTAAAAGAAACTTCAAGCACTTCATTGAATAGGTTAAACGAGCCATATATCTAGCCTTGTCTTGTTCATTGGTGGCAGCAAAGCTCTCAACAATATTTGTTTTAGGTGCAAGGAAGTGATTGTATTTATCTTGTGCCACATTGTGAAAGCTAGTCATACCACCAACATGTTTTGCAATCCTTTTTCTCATGTGCCAATTCCTAAATCCCCTATTTACAAATGCATCTCCACCAGAATTATTAATTTTATGCTTGAATAAGTAACAAATAAAACAGAATGCAGCATCTTGTTCCACACTATATTCAAGCCATTTAAATTCGTCATACCAACTAGGAAGGAAGCGCCGAGGCTTACCTCCAATTTTCCTTATAGGAAAATTGTGGCTGCGTGGTTGGCATGGCCCTAATGCAATATATCCCCTTATCACAGAATTCCGTTCATTGACATCATAATTTTTGATTGCAATTCGCCTTCCAGGATCATGACAAAGTAAATCAATGTCATAAATAGCTTCATCACTTGAGTCATACTCTGTCTCTTCATCATCACCATCTCTGATGGGAGACCAATCTCTGATAGGAGACCAAGTGGAAGGTTGCTCCTGCTGTGTCACTGCTGTTGCTATGTCTGGATCATTGCTAGCTACCTCTGTTTCAGGTTCTGTCACATCTCTTGCTGCATCACTGGCTGCTACCTCAGGCACAACCTCAACTGCAGTAATCTGAATCTGAACTGGACTCTCATTTGCATCTGTAATCGGCTGAACAGAAGGAACAACAACTTCACTGTCAATTCTAACTGGCTGTGTTGTTGATCCAGAACCAGAACCTAACCCTACCTTCCTAGACTTTGAATGTCTATCCCACAAAGTCTTCAAATCAATCGATTTCTTCTTCATTTTGAGAGTTCTTCAATCTACAGAACTACAAAAGTACAGGAAAAAGAAACTACTCAGAGACTAAGGTAAAAAAACATCAGACATGGACACATAGTGAGTGGATTTAGGACTGATTGAATCTTGAACTCTTGATTTGTCACCTGAAATTGCGCCTGCCGCAGTGCCGCTGGGCGCTGTCCCGCTGAGCTGCAGCTGTTGGCCGGCCGCCGCCGCGCCCCTGCCCCTCGGCCTCAT
More
|
||||||||||
| CDS seq | ATGAGGCCGAGGGGCAGGGGCGCGGCGGCGGCCGGCCAACAGCTGCAGCTCAGCGGGACAGCGCCCAGCGGCACTGCGGCAGGCGCAATTTCAGATGCAAATGAGAGTCCAGTTCAGATTCAGATTACTGCAGTTGAGGTTGTGCCTGAGGTAGCAGCCAGTGATGCAGCAAGAGATGTGACAGAACCTGAAACAGAGGTAGCTAGCAATGATCCAGACATAGCAACAGCAGTGACACAGCAGGAGCAACCTTCCACTTGGTCTCCTATCAGAGATTGGTCTCCCATCAGAGATGGTGATGATGAAGAGACAGAGTATGACTCAAGTGATGAAGCTATTTATGACATTGATTTACTTTGTCATGATCCTGGAAGGCGAATTGCAATCAAAAATTATGATGTCAATGAACGGAATTCTGTGATAAGGGGATATATTGCATTAGGGCCATGCCAACCACGCAGCCACAATTTTCCTATAAGGAAAATTGGAGGTAAGCCTCGGCGCTTCCTTCCTAGTTGGTATGACGAATTTAAATGGCTTGAATATAGTGTGGAACAAGATGCTGCATTCTGTTTTATTTGTTACTTATTCAAGCATAAAATTAATAATTCTGGTGGAGATGCATTTGTAAATAGGGGATTTAGGAATTGGCACATGAGAAAAAGGATTGCAAAACATGTTGGTGGTATGACTAGCTTTCACAATGTGGCACAAGATAAATACAATCACTTCCTTGCACCTAAAACAAATATTGTTGAGAGCTTTGCTGCCACCAATGAACAAGACAAGGCTAGATATATGGCTCGTTTAACCTATTCAATGAAGTGCTTGAAGTTTCTTTTAAGGCAAGGTTTGGCTGCCCGTGGACATTATGAAAGTGAAAAGTCACTTAATAAAGGAAATTTCCTTGAGATGTTGAGTATGCTAGCAGAAAACTTTGAAGAAGTTGGTAAGGTGGTTTTGAATAATGCTCCAAAGAATTGTAAGTTGACTGCTCCCGAAATACAAAAACAGATAGCTAATTGTTGTGCCAAAGAAACTACTAAGCTTATCATGGAAGACCTTGGTGATGAATATTTTGCAATACTTGCCGATGAATCTAGTGATGTGTACCAAAAAGAACAGTTGGCTCTTTGTTTGAGATATGTTGATAAAAAAGGAAGGGTAGTTGAGAGGTTCCTTGGTGTTGTTCATGTTGAAAATACTACTTCCTTGACACTTAAAGCTGCAATTGAATCATTGCTTATGGAGCATTCCTTGAGCTTGTCTAAGGTCCGTGGGCAAGGCTATGACGGTGCTAGTAACATGAAGGGTCATGCTAATGGACTAAAGAAATTGATTATGGATGAGTGCCCTTCTGCCTATTATGTCCATTGCTTTGCACATCAACTCCAATTAACACTTGTGGCTGTTGCTAAGGAAAACCCAGATTGTGTGTGGTTCTTTGAGCAACTTAGATTTTTGTTAAATCTTCTTGGGAATTCTTGTAAGAAGACAGAAATGCTTAGAGTTGCACAAGCTCAAAGAATTGTAGAAGAACTAGATTTGGGTGACATTGAAACTGGAAAGGGTTTGAATCAAGAAATGGGTTTGGGCAGGCCAGCAGATACTCGTTGGGGATCTCACTATAAAACTGTTATGCATGTCCTATCTTTGTATCCTTCAATTCAAAAAGTTCTTATAATGGTTGGCAAGGATCGCTCTTTTGGTGCAGAATGTGCAAATGCACAAACAGTGTTGACAATATTCCAATCATTTGAGTTTGTTTTTATGGCACACTTGATGCAAACAGTACTTGGGTTCACATCTGACTTGAATCATGCTTTGCAGAAGAGGGATCAAGACATTGTTAATGCAGTAGGACTGATTTTATTGACAAAGTTTCAATTGCAGCAATTACGCGAGGATCCTGGATGGGATGATTTTCTTCAAGAAGTGCAATCTTTTTGTGTGAAGCATAAGATCAAGATCCCTGATATGGACTCTTTCTATCGGCCGGTTGGAAGAGATAGGAGGTTCTTTATTAAAATCAAGAATATGCATCGCTTCCATGTTGACATGTTTCTAAGTGTCATTGATAGACAACTACAAGAGCTTAATGAACGGTTTGATGAGGTAAACACAGATTTGCTCCTTTGTATGGCTGCATTTAGTCCTATAGATAACTTTGCTAGTTGGGACAAAGATAAGTTGATTAAGCTTGCACGGTTTTATCCTAATGATTTCTCAAGCACAGAGATGAACCATCTTCCATCAGCATTGAAACTCTTCCTCACTGAGATGCGTATAGATGAAAGGTTTAGAAAAGTAAAAAATCTTGCTAATCTTTCCATTATGATTGTTGAAACAAAATTGCACAATAGACATGAGATTGTTTACAAGCTTCTCAAATTGGTTCTGGTACTTCCAGTAGCAACAGCTAGTGTTGAAAGAATATTTTCTGCCATGAATTATGTGAAGAATAAATTGAGAAACAGGATGGGGGATCAATACTTGAATGATTGCTTGGTCACATTTATTGAGCGTGAGATGTTTTTGAAAGTCAAGGAGTGTGATATTATAAACCGCTTTCAAGCCATGAAGGAACGCAGAATTAAAGCTACTCTTCCAAGCCACGAAGGAACCGAAATAGAAAATTAG
More
|
||||||||||
| Protein seq | MRPRGRGAAAAGQQLQLSGTAPSGTAAGAISDANESPVQIQITAVEVVPEVAASDAARDVTEPETEVASNDPDIATAVTQQEQPSTWSPIRDWSPIRDGDDEETEYDSSDEAIYDIDLLCHDPGRRIAIKNYDVNERNSVIRGYIALGPCQPRSHNFPIRKIGGKPRRFLPSWYDEFKWLEYSVEQDAAFCFICYLFKHKINNSGGDAFVNRGFRNWHMRKRIAKHVGGMTSFHNVAQDKYNHFLAPKTNIVESFAATNEQDKARYMARLTYSMKCLKFLLRQGLAARGHYESEKSLNKGNFLEMLSMLAENFEEVGKVVLNNAPKNCKLTAPEIQKQIANCCAKETTKLIMEDLGDEYFAILADESSDVYQKEQLALCLRYVDKKGRVVERFLGVVHVENTTSLTLKAAIESLLMEHSLSLSKVRGQGYDGASNMKGHANGLKKLIMDECPSAYYVHCFAHQLQLTLVAVAKENPDCVWFFEQLRFLLNLLGNSCKKTEMLRVAQAQRIVEELDLGDIETGKGLNQEMGLGRPADTRWGSHYKTVMHVLSLYPSIQKVLIMVGKDRSFGAECANAQTVLTIFQSFEFVFMAHLMQTVLGFTSDLNHALQKRDQDIVNAVGLILLTKFQLQQLREDPGWDDFLQEVQSFCVKHKIKIPDMDSFYRPVGRDRRFFIKIKNMHRFHVDMFLSVIDRQLQELNERFDEVNTDLLLCMAAFSPIDNFASWDKDKLIKLARFYPNDFSSTEMNHLPSALKLFLTEMRIDERFRKVKNLANLSIMIVETKLHNRHEIVYKLLKLVLVLPVATASVERIFSAMNYVKNKLRNRMGDQYLNDCLVTFIEREMFLKVKECDIINRFQAMKERRIKATLPSHEGTEIEN |
||||||||||
| Function | Zinc finger MYM-type protein 1 [UniProtKB/Swiss-Prot:Q5SVZ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g11830 | LOC_Os06g11830.1 | Chr06 | 6258432 | 6261359 | - | MSU_osa1r7 | ||
| CDS seq | ATGAGGCCGAGGGGCAGGGGCGCGGCGGCGGCCGGCCAACAGCTGCAGCTCAGCGGGACAGCGCCCAGCGGCACTGCGGCAGGCGCAATTTCAGATGCAAATGAGAGTCCAGTTCAGATTCAGATTACTGCAGTTGAGGTTGTGCCTGAGGTAGCAGCCAGTGATGCAGCAAGAGATGTGACAGAACCTGAAACAGAGGTAGCTAGCAATGATCCAGACATAGCAACAGCAGTGACACAGCAGGAGCAACCTTCCACTTGGTCTCCTATCAGAGATTGGTCTCCCATCAGAGATGGTGATGATGAAGAGACAGAGTATGACTCAAGTGATGAAGCTATTTATGACATTGATTTACTTTGTCATGATCCTGGAAGGCGAATTGCAATCAAAAATTATGATGTCAATGAACGGAATTCTGTGATAAGGGGATATATTGCATTAGGGCCATGCCAACCACGCAGCCACAATTTTCCTATAAGGAAAATTGGAGGTAAGCCTCGGCGCTTCCTTCCTAGTTGGTATGACGAATTTAAATGGCTTGAATATAGTGTGGAACAAGATGCTGCATTCTGTTTTATTTGTTACTTATTCAAGCATAAAATTAATAATTCTGGTGGAGATGCATTTGTAAATAGGGGATTTAGGAATTGGCACATGAGAAAAAGGATTGCAAAACATGTTGGTGGTATGACTAGCTTTCACAATGTGGCACAAGATAAATACAATCACTTCCTTGCACCTAAAACAAATATTGTTGAGAGCTTTGCTGCCACCAATGAACAAGACAAGGCTAGATATATGGCTCGTTTAACCTATTCAATGAAGTGCTTGAAGTTTCTTTTAAGGCAAGGTTTGGCTGCCCGTGGACATTATGAAAGTGAAAAGTCACTTAATAAAGGAAATTTCCTTGAGATGTTGAGTATGCTAGCAGAAAACTTTGAAGAAGTTGGTAAGGTGGTTTTGAATAATGCTCCAAAGAATTGTAAGTTGACTGCTCCCGAAATACAAAAACAGATAGCTAATTGTTGTGCCAAAGAAACTACTAAGCTTATCATGGAAGACCTTGGTGATGAATATTTTGCAATACTTGCCGATGAATCTAGTGATGTGTACCAAAAAGAACAGTTGGCTCTTTGTTTGAGATATGTTGATAAAAAAGGAAGGGTAGTTGAGAGGTTCCTTGGTGTTGTTCATGTTGAAAATACTACTTCCTTGACACTTAAAGCTGCAATTGAATCATTGCTTATGGAGCATTCCTTGAGCTTGTCTAAGGTCCGTGGGCAAGGCTATGACGGTGCTAGTAACATGAAGGGTCATGCTAATGGACTAAAGAAATTGATTATGGATGAGTGCCCTTCTGCCTATTATGTCCATTGCTTTGCACATCAACTCCAATTAACACTTGTGGCTGTTGCTAAGGAAAACCCAGATTGTGTGTGGTTCTTTGAGCAACTTAGATTTTTGTTAAATCTTCTTGGGAATTCTTGTAAGAAGACAGAAATGCTTAGAGTTGCACAAGCTCAAAGAATTGTAGAAGAACTAGATTTGGGTGACATTGAAACTGGAAAGGGTTTGAATCAAGAAATGGGTTTGGGCAGGCCAGCAGATACTCGTTGGGGATCTCACTATAAAACTGTTATGCATGTCCTATCTTTGTATCCTTCAATTCAAAAAGTTCTTATAATGGTTGGCAAGGATCGCTCTTTTGGTGCAGAATGTGCAAATGCACAAACAGTGTTGACAATATTCCAATCATTTGAGTTTGTTTTTATGGCACACTTGATGCAAACAGTACTTGGGTTCACATCTGACTTGAATCATGCTTTGCAGAAGAGGGATCAAGACATTGTTAATGCAGTAGGACTGATTTTATTGACAAAGTTTCAATTGCAGCAATTACGCGAGGATCCTGGATGGGATGATTTTCTTCAAGAAGTGCAATCTTTTTGTGTGAAGCATAAGATCAAGATCCCTGATATGGACTCTTTCTATCGGCCGGTTGGAAGAGATAGGAGGTTCTTTATTAAAATCAAGAATATGCATCGCTTCCATGTTGACATGTTTCTAAGTGTCATTGATAGACAACTACAAGAGCTTAATGAACGGTTTGATGAGGTAAACACAGATTTGCTCCTTTGTATGGCTGCATTTAGTCCTATAGATAACTTTGCTAGTTGGGACAAAGATAAGTTGATTAAGCTTGCACGGTTTTATCCTAATGATTTCTCAAGCACAGAGATGAACCATCTTCCATCAGCATTGAAACTCTTCCTCACTGAGATGCGTATAGATGAAAGGTTTAGAAAAGTAAAAAATCTTGCTAATCTTTCCATTATGATTGTTGAAACAAAATTGCACAATAGACATGAGATTGTTTACAAGCTTCTCAAATTGGTTCTGGTACTTCCAGTAGCAACAGCTAGTGTTGAAAGAATATTTTCTGCCATGAATTATGTGAAGAATAAATTGAGAAACAGGATGGGGGATCAATACTTGAATGATTGCTTGGTCACATTTATTGAGCGTGAGATGTTTTTGAAAGTCAAGGAGTGTGATATTATAAACCGCTTTCAAGCCATGAAGGAACGCAGAATTAAAGCTACTCTTCCAAGCCACGAAGGAACCGAAATAGAAAATTAG
More
|
|||||||
| Protein seq | MRPRGRGAAAAGQQLQLSGTAPSGTAAGAISDANESPVQIQITAVEVVPEVAASDAARDVTEPETEVASNDPDIATAVTQQEQPSTWSPIRDWSPIRDGDDEETEYDSSDEAIYDIDLLCHDPGRRIAIKNYDVNERNSVIRGYIALGPCQPRSHNFPIRKIGGKPRRFLPSWYDEFKWLEYSVEQDAAFCFICYLFKHKINNSGGDAFVNRGFRNWHMRKRIAKHVGGMTSFHNVAQDKYNHFLAPKTNIVESFAATNEQDKARYMARLTYSMKCLKFLLRQGLAARGHYESEKSLNKGNFLEMLSMLAENFEEVGKVVLNNAPKNCKLTAPEIQKQIANCCAKETTKLIMEDLGDEYFAILADESSDVYQKEQLALCLRYVDKKGRVVERFLGVVHVENTTSLTLKAAIESLLMEHSLSLSKVRGQGYDGASNMKGHANGLKKLIMDECPSAYYVHCFAHQLQLTLVAVAKENPDCVWFFEQLRFLLNLLGNSCKKTEMLRVAQAQRIVEELDLGDIETGKGLNQEMGLGRPADTRWGSHYKTVMHVLSLYPSIQKVLIMVGKDRSFGAECANAQTVLTIFQSFEFVFMAHLMQTVLGFTSDLNHALQKRDQDIVNAVGLILLTKFQLQQLREDPGWDDFLQEVQSFCVKHKIKIPDMDSFYRPVGRDRRFFIKIKNMHRFHVDMFLSVIDRQLQELNERFDEVNTDLLLCMAAFSPIDNFASWDKDKLIKLARFYPNDFSSTEMNHLPSALKLFLTEMRIDERFRKVKNLANLSIMIVETKLHNRHEIVYKLLKLVLVLPVATASVERIFSAMNYVKNKLRNRMGDQYLNDCLVTFIEREMFLKVKECDIINRFQAMKERRIKATLPSHEGTEIEN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0290900 | SBH | 2.926850 | 1.992391 | 2.263971 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g15340 | SBH | 0.094942 | 0.134714 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0290900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0105400 | RBH | 0.002425 | 0.00893 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0106200 | RBH | 0.1362955 | 0.0071175 | 0.0036385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
