Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os09g0290900 | OGI:09018720 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr09:6673037-6678975 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGGGCCATGAGGAGCGGTGGCGGTGGCCGAGCAACTCGCCGCGGGCAGGGAACAGGGCCCCGGCGTGCCGCGCCAGCGCTACCGCGGAGCTCCTGCGATGCTCCACCTCCGAGGTGGGACGGCCCCTCTGATCCGGCTCCTCCTCTCGCCCCTTCTCTCACGCCCAACCCTAACCCGGCTATGGCGCCCTTGTTGCCGGCGCCTCTCTTGCTGCCGCTGGTGCCACATCCGAGGGAGCAAGAGCAGCAGGAGAATGCTGAGGAAGGAGAAGAACAGAGGCCGAGGCCGACGCCGACAACCATGGAAAAGAAGGTCAGTAAATTAGTGTCTTTGTAGTTTGTATTTTAATCTTGTCCTCCAATTGATTGGGAAAAATTAAGAATTGAGCGATTGATTGATTTGTTACACACATAATTTTGTGATTTAGGTTGTAGAGCCTTCAAAGAAGAAGAAATTTGTGGATTTGAAATCAATGTGGGGTAGAGCTGAAAAGAAACTGAAGTCTATAGTTGATAGCAATAATATTTCTGAGCATTCAGCTAGGAGGAAAGACCCTGAACCTGCTACTATACATGCACCTGCAACTAAAGAGATTGGGTGTAGTAGAGCATGTGAAGTTGGATTTGCACAAACAGAAACTCAAGTGCCCTATGAAAGTATAGAAGTATCAAGACCTCAAGATGTAGATGGCAGCATAGAAGTATCTAAACCTCATGTTGCAAATTCAGAATCTGAAGAGGAAGATGATTGGCTAGAAGATGTTGATGAGGATGTTGGTTTTCTTCCACATGATCCTGGAAAGAGGATTGCCATCTCAGATTATAGTGTGTATCAGCAAGATGAAGTGAGGATGAAGTATATTGCACTTGGGCCTTGTCGACCACCACTAGAGCAATTTCCTCAAAGAAATTGTGGAGGTAAACGTCGTTTCATACATAGCTTGTTTGATAAGTATAGTTGGCTTGAATATAGTGAGGAAAAGGATGCTGCATTCTGTTTTGTTTGCTACTTGTTCAAAGATAGAACTAATTATGTTGGTGGGGATAGTTTTGTGAATGAGGGCTTTAGACAATGGAACCATCATGAAACTAATCTTGCCATATGCAATTTAATTTTTGTTTACTGGATATGTTATTTAAATTTTGCTTTGAGATAGATTTGAATTTTTGCCTGACGTACACAATTATGGAATTAATTTCTGCTGGTTCACAAAAAATATATGGGCTGCACATGCCTAAAATTTGCTTTGAGATTGATTTCAAATCTTTCCTTGCATACATATATTTATGGAACTAATCTTTTTTGTCAATTATGGAACTATAATCTTCGTTGGTTCAAGTTTCACGATAAATCCATGTATTGCACGCGCGGGCCATAGGAAGTCCTCAACTTCTCTCGTTGTGCCACGTGGCAACATGAGAGCGTTTTGAGGGAGCCACGTGGCTGTTAGTAGTGCACTTAATCTAGCTCAATAGAAATATGATATGTTCATTAGACCTAATACAGCAATTGGTGAGAATTTAAGGAAGAGAAGCAAACATGATAAGGTTGTTTATATGGCCCGCTTAACTTACTCACTTAAGTGCCTGAGATTTCTTTTACGGCAATGGTTGGCTTGTCGTGGGCATAATGAAAGTAAAGAATCACTCAATAGAGAAAATTTTCTTGAGCTTCTAAATTGGTTGGCTAGAAATTTCAAAGAGGTCAACGAGGTTGTTCTAAAGAATGCTCCAAAGAATTGTAAAATGACATCCCCTAGGATACAAAAACAGCTTATTAGATGTTGTGCTACAGAGACTACTAAACTTCTCATGGAAGATCTTGGGGATGAGTTTTTTTTCAATTCTTGCTGATGAGTCTAGCGATGTGTATCAAAATGAGCAGTTGGCACTTTGCTTGCGTTATGTTGACAAGAAAGGGAGGGTGGTTGAGCGCTTTCTTGGTATTGTGCATGTTGAGAATACTACAGCTTTGATACTTAGAGATGCTATCAAGAATTTACTAATGCAACAATCATTGAGCTTGTCTAAAGTTCGTGGTCAAGGATATGATGGGGCTAGTAACATGAAGGGTGAGGTTAATGGTCTAAAGAAGCTGATTATGAATGAATCTCCTTCTGCTTATTATGTTCATTGTTTTGCACATCAACTACAATTAACTCTTGTGGCCGTTGCTAGGGAGAATGGTGATTGTGTTTGGTTTTTTGAGTAACTTGGGTATTTGTTGAATACTATTGGGATTTCTTGTAAGAAACATCAAATGCTTTGAGTTGCTCAAGCTCAAGAGATTGTAGAAGCTTTGGAATTGGGTGAAATTGAAAGTGGGCAGGGTCTGAATCAAGAGATGGGTTTGGGTAGGCCAGGAGATACACGTTGGGGATCTCACTACAAAACAGTGCAACATATTCTTATTATGTATCGCTCAATCCGGAAGGTTCTACTACAAGTTGGAAAAGATCGTTCACAAAGCACGGAAGCTATAAAAGCTCAAACTGCATTACAATCATTTGTGTCATTTGAGATTGTTTTCATGGCACACTTGTTGAACACTATTCTTGGATACACAGATGACTTAAACACAGCTTTGCAAAGGAGGGCGCAAGATATTGTGAATGCGGTTGAGCTCATTGTTTTGACAAAGATGCAATTGGAGATGTTGCGGCAAGATGATGGGTGGGAGAATTTTTTAAAAAAAGTCACCTCTTTTTTATGAAGAACGAAGTCAAAGTTCCTCAGATGGATGCTAGGTACAAGCCGGTTGGAAGATCACCAAGCTTCTTTGGTAAAGTGCAGAATCTTCACCGCTTTAAAATTGAAATGTTTTTGAGTGTTATTGATAGACAACTTAGAGAACTAAATGACAGATTTGATGAGGTGAACACAGATTTACTTGTTTGCGTGGCTTCATTCAATCCCACTAATTCATTTGGTTCTTTTGACAAGGAAATGTTGGTTAAACTTGCACAATTCTATCCCAATGACTTCTCAGCCAATGACATCATGCACCTACCTATTCAGCTTGATCGTTTTATTATTGATATGCGTAGAGATGAAAGGTTTAGAGAAGTGAACACCATTGCTGAACTTTCGGTCAAGCTTGTTGATACAAATAAGCATATCAATTACACACTTGTCTACAAGCTACTGAAATTGGTGCTAGTCCTTCCTGTAGCAACTGCAAGTGTTGAAAATGTATTCTCCACAATGAATTATGTCAAGAACAAGCAAAGAAATAGAATAGGAGATGAATACTTGAATGATTGATTGGTAACATTTCTTGAATGAGATTGTTTTCAACAAGTTCCTGATGAAGACATAATACGTCATTTCCTGTCAATAAAGGCTCGTAGAGTCAAGTTGTAACAACTTGTGTTGATTTTTCAGAACATGGACAGGATGTAAGTATCTTGAACTTGGAAATATTGGCTCTATACTTGAATTATTTTTTGCAACTGTGAATAACTACATTTATATTTTCTTTATGTAGCACACTATCTTATATAATATATGTTGCTGATGGGTATCATTCAATGGCATTTTCTTCCTCTGTATTGGATCCAATCTTTATGGTGGTGCAGCCATACGCAATGGTTAGTTGTGTCTTCTGACTTCTGTACTATTTTTTTATTCATTGTTCACTATAAAACATTTATTGTAAGTTATGTATGGTATTGAAATATACTTTGTCTTAATATATGCATGCTTGTGCTTGGATTGAATGACCATTAGTGGTTTGAGTTTATTTTTAATGTTGAACTAGTTTCTTGGTACTATGTACATAGTCCGTAGACTATAACTTCGTACCCCCATCGTTGAAATCCTGTGTCCGCCACTGACAAAGATGTCATTGATCTGCTAGTGCATATCTAGATGGCGTATGTACATACGCATCAACCCGCAAAATATGATCAAATAGATCAATCTTCAGTTAAGTCTCCTGTTTCGACGCATGGACAGCAAACTAGTATATGTAAATATTTGCTGAGATGCTACGCAGATGTTCTCATAGTAATAACATAATACGTTGGACTAGGTGAACTCCTTATATTTGTCAAATCGCTGCATAAAAAGAAAAAAAATCCCAAAAATGAGCACTTGACGAAAATGGCATATAATCTGAACCTGAGGAAAACGTATCTAAATAATGGAAAGTTCATATTTCTAGTGTGATGTAATTTAGTACTAAGGATTCTTAATGATTTTTTAAACCGTCAAAAAGCACGAAAGTAGAAAATAATGGAGGGGTCGAGTTGCTGAACAAGAAAATAGTGTTACAGGGTCATATTTGGAGATAGCTAGCTATAAGTTACGGAAATGCTTTTTGGCGATTGCTCGCCCTGGGGAGGGGGTAGCGATCAGATTCGCTCCCCACCTCCCCCCTCCCTCCACCTATTTTCTTTTTTGGCACCACATTACTTTCCTATTTTAGTAAATTTATGTACCTAAAGTTTATACACCTCAAGTTTACACATTTTAAGTTTAGAGACCAAAAGTTTATATATCCGATTCAAATTTAAATTTGAATTCAAATATTTTTTTATATATAATATTTCTATACATCTAAAGTTTATACACCTAAAGTTTATAGAACTAAAGTTTATAAGTCAAAAGTTTATATACCCGATTCAAATTTGAATTTGAATTATATCCGATTCAAATTTGAATTTGAATTCAAATATTCGATTCAAATTTGAATTTGAATTCAAATATTTTTCATATATAGTATTTCTATACATCAAAAGTTTATACACCTAAAGTAAAGTATATAGACCTAAAGTTTATAGAACTAAAGTTTATATACCCGATTCAAATTTAAATTTGAATTATATCCGATTCAAATTTGAATTTGAATTCAAATATTTTCTATATACATCTAAAGTTTATAGATCCAAAGTTTATAGAACTAAAGTTTATATACCCGATTCAAATTTGAATTTGAATTCAAATATTTTCTATATACATCTAAAGTTTATAGATCCAAAGTTTATAAGTCAAAAGTTTACATACCCGATTCAAATTTGAATTTGAATTCAAATTCAAATTTGAATTTGAAAATTCAAATTCAAATTGAATTCAAATTTAAATTTGAATTCAAATTTGAATTCGAATTTAAATTTTAATTTGAATTCAAATTTTTTATATATAGTATTTCTATACATAAAGTTTTCTAACTATTTGATTTTTTAAAATTTTTTTGTGGTTTACTGTAGTAGGAAGAGAAGAAGGGGAGGAGGAAGGGAAGAAGTGGGAGGACTGCGTATAGGGGGGGAGGCGGGGGATGCGATCGCTGGGCGATGGTCCTGGCGATCGATCGCCCATTAGCACCCCCCTATAAGTTATGCCTATGTGTACTGGGAAGCTCAAACAATTAACAAGAAGCAAAATACAATATTTTTTTATTTGATTTTTGGTCATACCGGCCTGCACAGTTGCATATTCATCGTACACCACGATTGACCTTTTTCTTTTTTTTTTCTTTTTTTTTTATGCGCGAGAAGACGCCAAGATTTCTCCAAGACAGAAAAGCACTACAGCACAGGAGTGTGACCTTGCAGTTTCCAGCCATTGATTAATTCTATCAGCGGGCTTTCTTGTTTGGACATAACATTCCAAGAAGCAGCTGCCAGCGATCACCAAGGAACCAAATGTCCTCCAAGCAATTGATCACGGAAGCAACCTACGAGTTACAATGGGTAGCCCATCCACTGGAATCCTGCAGCTTCCCATTCCTATGGCTTTTCTCTAACTTGCACCAGAGAACGCACAACCACGACAGACTAAATTGAATTACTCAAGCCCACATTTTCATTGAGGAGGTATAGAGAGCTAGCGTGTGTTGTGAGCAAGCAGAACAATGTTATGCCATATGCGTCTGGTTTTGTAGGAACGCACCGCTTCTACTGAAATTAATAATGGTATTGCTATAGTAGTTGAGCACG
More
|
||||||||||
| CDS seq | AGCAATTTCCTCAAAGAAATTGTGGAGTTGGCACTTTGCTTGCGTTATGTTGACAAGAAAGGGAGGGTGGTTGAGCGCTTTCTTGGTATTGTGCATGTTGAGAATACTACAGCTTTGATACTTAGAGATGCTATCAAGAATTTACTAATGCAACAATCATTGAGCTTGTCTAAAGTTCGTGGTCAAGGATATGATGGGGCTAGTAACATGAAGGGTGAGGTTAATGGTCTAAAGAAGCTGATTATGAATGAATCTCCTTCTGCTTATTATGTTCATTGTTTTGCACATCAACTACAATTAACTCTTGTGGCCGTTGCTAGGGAGAATGGTGATTGTGTTTGGTTTTTTGAGTAA |
||||||||||
| Protein seq | SNFLKEIVELALCLRYVDKKGRVVERFLGIVHVENTTALILRDAIKNLLMQQSLSLSKVRGQGYDGASNMKGEVNGLKKLIMNESPSAYYVHCFAHQLQLTLVAVARENGDCVWFFE |
||||||||||
| Function | Zinc finger MYM-type protein 1 [UniProtKB/Swiss-Prot:Q5SVZ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0290900 | Os09t0290900-01 | Chr09 | 6673037 | 6678975 | + | irgsp1_rep | ||
| CDS seq | AGCAATTTCCTCAAAGAAATTGTGGAGTTGGCACTTTGCTTGCGTTATGTTGACAAGAAAGGGAGGGTGGTTGAGCGCTTTCTTGGTATTGTGCATGTTGAGAATACTACAGCTTTGATACTTAGAGATGCTATCAAGAATTTACTAATGCAACAATCATTGAGCTTGTCTAAAGTTCGTGGTCAAGGATATGATGGGGCTAGTAACATGAAGGGTGAGGTTAATGGTCTAAAGAAGCTGATTATGAATGAATCTCCTTCTGCTTATTATGTTCATTGTTTTGCACATCAACTACAATTAACTCTTGTGGCCGTTGCTAGGGAGAATGGTGATTGTGTTTGGTTTTTTGAGTAA
More
|
|||||||
| Protein seq | SNFLKEIVELALCLRYVDKKGRVVERFLGIVHVENTTALILRDAIKNLLMQQSLSLSKVRGQGYDGASNMKGEVNGLKKLIMNESPSAYYVHCFAHQLQLTLVAVARENGDCVWFFE |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0290900 | RBH | 2.926850 | 1.992391 | 2.263971 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g15340 | RBH | 0.094942 | 0.134714 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0105400 | RBH | 0.008787 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0514700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
