Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g08570 | OGI:06012130 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:4266426-4270771 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CATTCTGAAACATGAAAAGGGCACATGATTGTTGTAGATATATATGTAATATCAATTTATATCTGTATAATGAACAATTGCTCTTTGGCATAAAATATTCATCACTTAGGTATTGAACATTGTGAGAAAAAACAACTAAAAATGTACTGACTTGCTAAAAATTTGTTGCGTAGCTGCTCATATCATATATGATACCTGAAACAACTTTCTCTGCATGATTTACTCTAGAAATTGCCCTTTTAGCCGTGTTTATCAGCTATCACTAGACACCAATCAACAATAGTTGCCATACGCTCGCACGGAATTTTGATCCCACCTGCAAGACATTTGCAGATTTCTCCAACCCCTTGGCTTTGAATCAGCCATACCCACATTTGCTTGTGCAAATTGGAGTCAATCAGTTAATCCCAGAGTAGCTCCTCTGCATCAATTCATCTTGAATATTCAAGCAGAGGTATGCAGTCTTCTCAGGCAGCCATCAATTCGATCTTTTTATGCCTATGATCACCATCATACAATGCAAATCAATCCATTGATCAAAGCATTTCAGTCATCAGAACGCTTGTCACAGGGAGAAACCCTATCCTGATGTGGTTGAGAAATCCAGTGCAACCCATCAAGCAATTCTGAGTACATCCTCTGGTCTAACGGCCCTCGCTTCCTCTCCTTCAGCTCCTCCAGCAGCTCGAACGCATCCTCTGCGCGCCCAGCCCTGCACATCTCCTCCATCAGTGTCCTGTAGGTGATCATATCTGGCTTCCTCTTGCAATCCAGCATATCTATAAGAACATTTCTTGATTCCTCAAATCTCCACTCCAACGCTAGCGCTGACACGGCCGTCATGTACACGCCACCAGTCGGCACAAATCCCTTCTCCCTCGCCTCCCGAAAGTACACCATTCCTTTGTCAGTCCTGCCCTTCTGGAACATGGCCTTGACAATGTAGCCATAGGTGAACTCATTGGCCTCACAGCCGTATAGCGGCATTTCACGGAACACCTTGAGTGCATCGTCTACCTCAAGGCACCGGGCATAGGCCTTGATGATTAGGTTGAGGAGGAAGGTGTCCGGGACCACGCCGGAGGCCTTCATCTGGCGGGAGAGGGACCGGACGGCGTGGAGGTAGACCATGGACGCCGGCGGGCGGCGGACGCGGCGCACGACGGAGGTGAGGAGGAGCGTGTAGGTCTCGACGTCCGGGCGGCAGGCGGCGGATGCCGGGAGCGACCGCATCTTGTTGAACATGTCGAAGGCGAGCGGGAAGAGGCGGCGGCGGGCGCAGCAGAAGCGGAGGCAGGCGTTGAAGAGCCGGAGGTCGGGGCCGCACGCCCCGGCGAGGACGTCGTAGACGAGGTTCTCCGCGGCGGCGGGGCGGCGGCCGGAGGAGGCCGCGGTCAGCGCCGCGAGGTAGGACGCGGGCGCGTGGCGGAACCCCGGGCGGAGCGCCGCCCACCGGAAGAGCGCGAGCGCGAGGTCCGGGTCGCGCTCGGAGGAGATCGCCTCGGCCAGGTCCCCCGCCGTGAAGCCCGGCCGGAGCCGCGCGACCCACGCAGCGAACTGCTCGTCCGGCGGCGCGCGGACGGGGGACTCGGGCTCCACCACGCCCGCGGGCACTCCTCCTGCTTCTTCTCCTCCAGACGCGGCATAGGAGCTGAAGCGGCGGAGGCTGCGAGAGAAGCGGCGGGCGGCGGCGGCGGCGGCGAGGAGTGCCATGGCGGTCGGGCTGCTCCGGCTAGGCGCTTGTGGATTTGGAGCTGAGCTGCCACTGGGCCAGGCCCAATATTTGTTGCTGGCCCACTCTACGTAACCTGTTACCTGCAGCCTCCTTTAATTGGATTCATAACATAAAGGGATTTTAATTGGGTAGTACTAATGCGCGGGTGTCACCCCCCATCCCCCTAAACACACTCCTCTCCCCTTCCTCCTCCCCTACTTCTCTTCCTACTACACCATAAATTTTTAAACAAATAAAAAAAACAAACGTTAGAAAAAATTATATATTAAAAAATATTTAAATTCAAATTGAAATTCAAATTTAAATCGGATATATAAACTTTGGGTCTATAAACTTTAGGTGTATAATATTTAGATGTATAGAAATACTATATATAAAAAATATTTGAATTCAGATTCAAATTTGAATCGGATATATAAACTTTTGACTTATAAATTTGGGGTCTCTGTTAAACTTGAGATGTGTAAACTTGAGGTGCACAAACTTTAGGTGTATAAATTTATTAAAATAGGAAAGTAATACGGTGCCAAAAAAGAAAATCACATGAAGAAGGGGGTGATCGATGTGGGGAGGGGGACTGATCGTGCCCAGCGATCGATCGCCCGTTAGGACTTTCGATTTTAATTGGATGTGTACTTGTGTATGATGTATACGATCCATCAAATTCTCTTACTTCCTCCGATTTATCATATTATAAGTCATTTGATCAAATTTATAAAAAGATATAGCAGTATCATCGACACAAAACAAGCATATTATCGAAATATATTTAATGTTAGATTTAATGTAATTGATTTGATATTTTAGATATTGCTAACTTTTTTTTATAAATTTAATCAAATTTAACAAAGTATGATTAGAAAAAAAAATCGAACGACTTATGTAATATGAAACGGAAGGAGTAATTTTGAGACCGAGGGAGTATATTACTGCATCTTCTCGCATTTTGCATTTTGCAAAACACGTGACAAGTAGAGTGGAGTAGTAGAGAAAAGCATCTTCTCGCATCCATGGCAGTGGAGATCGTCAAGTCCTCCATGGTGACGGCCGGCGAGGCGACGCCGGAGCACAGGATATGGCTCTCCAACCTCGACCTGCTGGTGGCCAGGAGCCACACCCCCACCGTCTACGTCTACCGGCGAACTGGCCCCGACTCCGACGCGGCGTTTTTCTCGCCGGACGTCCTCAAGGCCGCCCTGTCCAAGGTGCTCGTCCCCTTCTACCCCCTCGCCGGCCGCCTCGCTCAGGACAGCGCCGGCAGGCCGGAGATCAGCTGCACCGGCGAGGGCGTGCTCTTCGTCACGGCGCGGAGTGGCGCCACCATTGACGACCTGGGCGACCTCGCCCCGTCGGACGAGCTCCGGCGGATGCTTGTCCCGGCGGCCGATGTCGCCGCTGCCAGCATCTTGGCCATGTTCCAGGTGACGTTCTTTAGGTGTGGAGGGGTGTGCCTGGGCGCGGCGATCCATCACACGGCGGCGGACGGCCTCGCGGCGCTGGACTTCGTCAACACGTGGGCCGCCATTGCGAGGGACGTCGCCGGCGACGGCGAGGCGGCGGCGGCGGCGGTGCAGCGGCCGTGGCTCGACCGCACGCTCCTCCGCGCGCGCTCCCCTCCCGCCGTGCGCTTCGACCACGCCGAGTACTCCCGTCGCCGCGGCGGCGGTTCAAAGCTGCCGTTCGACTCGGCCATCCTCCCCATGTCCAAGAACCAGCTCAACGCGCTCAAGGGCGCCGGCGCCGGCGCCGGCAAGAGGCTGTCCACTTTTACGGCGGTGGTCGCGCACGTGTGGCGGTGCGCGTGCAAGGCGCGCGGGCTCGCCGTCGCCGGAACGGAGGCGGCGACGAGGCTGTACATGACCGCCGACGCGCGCACCCGCCTGCACCCGCCGCTCCCGCGCGGCTACCTCGGCAACGCCATCTTCCGCGCGTCGGCGGTGTCCAAGGTGAGCGACATCGTCGCCGCCGGGCCGCTCGGCGCCGTCGCGGAGAAGGTGTCCGCCGCCACCGCGCGGCTCGACGACGGCTACGTCCGGTCGCTGCTGGACCACCTGGAGCAGACGGCGGCGGCGGCGAGCGGCGGCGCGGCGGGGCTCCGCAAGGGGGAGTGGGTGATGCCGGAGAGTGACCTGTGGGTGATCAGCTGGCAGGGGCTGCCGCTCTACGACGCCGACTTCGGCTGGGGGCGGCCGGCGTTCATGGGGCGTGCGTGCCTCCAGTTCAGCGGCCTCGTCTACCTCGTGCCAGGCCGAGACGACGGCGACGGCCGGCTCGACGTCGTCGTGGCCATGGACCCCGAGAGCCTTGCCAAGTTCAAGGATGTGTTCTATGAGGAGCTCAAGTGTTAGCTCCATTCGAGCTCAACACCAACTTTTTTTTTAATTAAGCCGAATTTATAACGATTTTGTTAAAAATATATTGATTTTTCCCGAAAAAAAAATATTGATTTCTGTCACTCTTTTAATTTTTTTTCCTGGTGAGATTGTTAATCTCTATTGTTTATTGTAAACGTACGTAAGTATGTTTCTCTCCAGTCTCCTTTTTTCACATAGGTAATTACTAGAAAAAAAATACCCGTGCGTTGCGACGGATAAATACTATTTTAATTTTA
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| CDS seq | ATGGCACTCCTCGCCGCCGCCGCCGCCGCCCGCCGCTTCTCTCGCAGCCTCCGCCGCTTCAGCTCCTATGCCGCGTCTGGAGGAGAAGAAGCAGGAGGAGTGCCCGCGGGCGTGGTGGAGCCCGAGTCCCCCGTCCGCGCGCCGCCGGACGAGCAGTTCGCTGCGTGGGTCGCGCGGCTCCGGCCGGGCTTCACGGCGGGGGACCTGGCCGAGGCGATCTCCTCCGAGCGCGACCCGGACCTCGCGCTCGCGCTCTTCCGGTGGGCGGCGCTCCGCCCGGGGTTCCGCCACGCGCCCGCGTCCTACCTCGCGGCGCTGACCGCGGCCTCCTCCGGCCGCCGCCCCGCCGCCGCGGAGAACCTCGTCTACGACGTCCTCGCCGGGGCGTGCGGCCCCGACCTCCGGCTCTTCAACGCCTGCCTCCGCTTCTGCTGCGCCCGCCGCCGCCTCTTCCCGCTCGCCTTCGACATGTTCAACAAGATGCGGTCGCTCCCGGCATCCGCCGCCTGCCGCCCGGACGTCGAGACCTACACGCTCCTCCTCACCTCCGTCGTGCGCCGCGTCCGCCGCCCGCCGGCGTCCATGGTCTACCTCCACGCCGTCCGGTCCCTCTCCCGCCAGATGAAGGCCTCCGGCGTGGTCCCGGACACCTTCCTCCTCAACCTAATCATCAAGGCCTATGCCCGGTGCCTTGAGGTAGACGATGCACTCAAGGTGTTCCGTGAAATGCCGCTATACGGCTGTGAGGCCAATGAGTTCACCTATGGCTACATTGTCAAGGCCATGTTCCAGAAGGGCAGGACTGACAAAGGAATGGTGTACTTTCGGGAGGCGAGGGAGAAGGGATTTGTGCCGACTGGTGGCGTGTACATGACGGCCGTGTCAGCGCTAGCGTTGGAGTGGAGATTTGAGGAATCAAGAAATGTTCTTATAGATATGCTGGATTGCAAGAGGAAGCCAGATATGATCACCTACAGGACACTGATGGAGGAGATGTGCAGGGCTGGGCGCGCAGAGGATGCGTTCGAGCTGCTGGAGGAGCTGAAGGAGAGGAAGCGAGGGCCGTTAGACCAGAGGATGTACTCAGAATTGCTTGATGGGTTGCACTGGATTTCTCAACCACATCAGGATAGGGTTTCTCCCTGTGACAAGCGTTCTGATGACTGA
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| Protein seq | MALLAAAAAARRFSRSLRRFSSYAASGGEEAGGVPAGVVEPESPVRAPPDEQFAAWVARLRPGFTAGDLAEAISSERDPDLALALFRWAALRPGFRHAPASYLAALTAASSGRRPAAAENLVYDVLAGACGPDLRLFNACLRFCCARRRLFPLAFDMFNKMRSLPASAACRPDVETYTLLLTSVVRRVRRPPASMVYLHAVRSLSRQMKASGVVPDTFLLNLIIKAYARCLEVDDALKVFREMPLYGCEANEFTYGYIVKAMFQKGRTDKGMVYFREAREKGFVPTGGVYMTAVSALALEWRFEESRNVLIDMLDCKRKPDMITYRTLMEEMCRAGRAEDAFELLEELKERKRGPLDQRMYSELLDGLHWISQPHQDRVSPCDKRSDD |
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| Function | Pentatricopeptide repeat-containing protein At3g25210, mitochondrial [UniProtKB/Swiss-Prot:Q9LSF5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g08570 | LOC_Os06g08570.1 | Chr06 | 4266426 | 4270771 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCACTCCTCGCCGCCGCCGCCGCCGCCCGCCGCTTCTCTCGCAGCCTCCGCCGCTTCAGCTCCTATGCCGCGTCTGGAGGAGAAGAAGCAGGAGGAGTGCCCGCGGGCGTGGTGGAGCCCGAGTCCCCCGTCCGCGCGCCGCCGGACGAGCAGTTCGCTGCGTGGGTCGCGCGGCTCCGGCCGGGCTTCACGGCGGGGGACCTGGCCGAGGCGATCTCCTCCGAGCGCGACCCGGACCTCGCGCTCGCGCTCTTCCGGTGGGCGGCGCTCCGCCCGGGGTTCCGCCACGCGCCCGCGTCCTACCTCGCGGCGCTGACCGCGGCCTCCTCCGGCCGCCGCCCCGCCGCCGCGGAGAACCTCGTCTACGACGTCCTCGCCGGGGCGTGCGGCCCCGACCTCCGGCTCTTCAACGCCTGCCTCCGCTTCTGCTGCGCCCGCCGCCGCCTCTTCCCGCTCGCCTTCGACATGTTCAACAAGATGCGGTCGCTCCCGGCATCCGCCGCCTGCCGCCCGGACGTCGAGACCTACACGCTCCTCCTCACCTCCGTCGTGCGCCGCGTCCGCCGCCCGCCGGCGTCCATGGTCTACCTCCACGCCGTCCGGTCCCTCTCCCGCCAGATGAAGGCCTCCGGCGTGGTCCCGGACACCTTCCTCCTCAACCTAATCATCAAGGCCTATGCCCGGTGCCTTGAGGTAGACGATGCACTCAAGGTGTTCCGTGAAATGCCGCTATACGGCTGTGAGGCCAATGAGTTCACCTATGGCTACATTGTCAAGGCCATGTTCCAGAAGGGCAGGACTGACAAAGGAATGGTGTACTTTCGGGAGGCGAGGGAGAAGGGATTTGTGCCGACTGGTGGCGTGTACATGACGGCCGTGTCAGCGCTAGCGTTGGAGTGGAGATTTGAGGAATCAAGAAATGTTCTTATAGATATGCTGGATTGCAAGAGGAAGCCAGATATGATCACCTACAGGACACTGATGGAGGAGATGTGCAGGGCTGGGCGCGCAGAGGATGCGTTCGAGCTGCTGGAGGAGCTGAAGGAGAGGAAGCGAGGGCCGTTAGACCAGAGGATGTACTCAGAATTGCTTGATGGGTTGCACTGGATTTCTCAACCACATCAGGATAGGGTTTCTCCCTGTGACAAGCGTTCTGATGACTGA
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| Protein seq | MALLAAAAAARRFSRSLRRFSSYAASGGEEAGGVPAGVVEPESPVRAPPDEQFAAWVARLRPGFTAGDLAEAISSERDPDLALALFRWAALRPGFRHAPASYLAALTAASSGRRPAAAENLVYDVLAGACGPDLRLFNACLRFCCARRRLFPLAFDMFNKMRSLPASAACRPDVETYTLLLTSVVRRVRRPPASMVYLHAVRSLSRQMKASGVVPDTFLLNLIIKAYARCLEVDDALKVFREMPLYGCEANEFTYGYIVKAMFQKGRTDKGMVYFREAREKGFVPTGGVYMTAVSALALEWRFEESRNVLIDMLDCKRKPDMITYRTLMEEMCRAGRAEDAFELLEELKERKRGPLDQRMYSELLDGLHWISQPHQDRVSPCDKRSDD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.037989 | 0.038748 | 0.035344 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0184866 | RBH | 0.059824 | 0.061351 | 0.146217 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g55020 | RBH | 0.401832 | 0.226412 | 0.255353 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0184866 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0005990 | RBH | 0.0 | 2.248613 | 1.065309 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0005830 | RBH | 0.0 | 0.920726 | 0.132958 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0005800 | RBH | 1.081711 | 0.954394 | 0.566865 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0006000 | RBH | 0.061056 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0005870 | RBH | 0.896265 | 0.0 | 1.878525 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0072500 | RBH | 1.227245 | 2.015653 | 1.6079755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0005760 | RBH | 0.082564 | 0.068663 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0071800 | RBH | 0 | 0 | 0.1648625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0006060 | RBH | 0.0 | 0.102998 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0005920 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0005930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0005960 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0005810 | RBH | 0.101084 | 1.187218 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G005670 | RBH | 0.066830 | 0.590029 | 0.528890 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0005920 | RBH | 0.0 | 0.0 | 1.827224 |
