Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g55020 | OGI:02095160 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:33706516-33708848 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGCGATCACCCCGTGGGCGGCGGCGCCGCCGTCCTCAGGCCGCCGGCCGCCGCGTGCGGTCGAGCTGCCTTGCCATGGCAAGGCCGCAGCCTTGCTGATAGCGAACGGAGGAAAACGACCAGGCTGTATGCCCGCATGGTGTTCGAAGGGGTCGGGAGCGATGGCTCGGGGTCGGGGGCGGTGGCTGCTGCCGACGCGGCTGCTGAACGTCTGCCTCGCCGCGCTCTGCCGCGGGGGGAGCCTCGCCGCCGCGGAATCCGTCCTCGTCGACGCCATCCGCCTCGGCCTGCCACCCGACGTCGTCACCTACAACACCCTCCTCGCCGCCCACTGCCGCGCCGCGGGCCTCGAGGCTGGCCTCGTCGTCATGGGACGGATGCGGGAGGCCGGGGTGGAGCCCGACGCCGTCACCTACAACTCCCTCATCGCGGGGGCCGCGCGCCGCGGGCTCCCGATACACGCCCTCGACCTGTTCGACGAAATGCTCCGTTCGGGGATCGCCCCCGACTCCTGGAGTTACAACCCCCTCATGCACTGCCTGTTCCGGTCCGGCCACCCGGAGGATGCCTACCGGGTGTTTGCTGATATGGCTGAGAAAGGCATTGCGCCGTGCGACACCACCTACAACACTCTCCTCGACGGGATGTTCAGGGCCGGTTATGCGATGAACGCATACAGGATGTTCAGGTACCTGCAGAGGGCGGGGCTCCCCGTGAGCATTGTGACTTACAACACCATGATTAACGGGCTGTGCAGTTCAGGCAAGGTGGGCTATGCCCGGATGGTCCTTAGGGAGCTTGGGAGGACTGATCATGCCCCAAATATTATCACTTACACGGCAGTTATGAAATGCTGCTTTAAGTATGGTAGGTTTGAGCAGGGGTTGGACACCTTCTTGTCATTGCTGGACAGAGGGTACATTTCGGATGTCTACCCTTACTGCACAGTGATCAGTGCTTTGGTTAAGAAGGGCCGGTTGGGAGAAGCTAATAATTATTGTGACCTCATGCTACAAAATGGATCTAGGCTTGACAGTGTGTGCTACAACACGCTGATTCACATGCGATGCCAAGAAGGGAAGCTGGATGACGCATTTGAGCTTGTGAGCATGATGGAAGATGGCGGCCTGGAGAGTGATGAGTACACATTCGCAATTTTGGTCAACGGGCTGTGCAAGATGGGACATATCGAGGCTGCAGAAAAGCAGCTATTTTACATGGAGATCAAGGGCATGCAATCTAATGTTGTGGCATACAATTGCTTGGTTGATGCGCTCTGCAAATTTCAAGAGGTGGATGCAGCTATCAGATTACTGCAGTGTATGAAACTAAAGGATGATTTTACTTACACATCACTAGTCCATGGTCTATGTAGGGTGGGTAGATACCATATGGCATCAAAATTCTTGCGAATCTGCTTGCATGAAGGTAATAATGTTCTTGCATCTGCAAAGCGTGCTGTCATTGCTGGGCTTCGTAGCTCAGGGTTTAAAAATGATTTGAGGAAAGTCCGGGTAGCATTAAATATGGCTAAGCTGTTACGACCATAATCCAAGGAAAATGGCCTGAAAGATCAATTCGCAAGAGAAATGACTGGATAATCCTGCATGGAGTTTAAGGATGAATATCTTGTCGGTGGCTCAGTGCATCATTCTATAGAAGTAAAATGGGTATACTCTTTTTCTGGAGAAACTGTAGGATGGTGATCTTGCAATATGCAATCAGCCTTTTCACTGTCAGTCTGTCAAACCCAAGCGGAACAAAATTAAACATCATGGGAAGCTGCAGACATCACCACTAGTTGGCGAACGGTATCGGCTCAGTATGTGCACAAAGCCACCACTAACTGGTGTATGCCTTGCCTTGGATTTTGTTGGGAAGGTAATTGTGGATTTATATTTTATATTCAAGTCTTCTGCTTAAATTAGTTATTACCTTATCGTTGTGTCACAGTAAATCATGCTAAGTTTACCCTCTTTTGGGTGGTTGTTGCAGATTGATTGGGTTTAGTTATCTGTTGCTCCAGACCAGACGATACAGAGCAAGCAATTAAAAAGAAGTACAAAAAGCTGCAGATTGGTACAGAAAAACCCATTTGTACATCATTTTTTTGTCTGTTCTTTAATTCTTATGAAGCAGTGGAAAAAAAAATCTCTTTGGGTGATACCATATGTCACAGTTTTAACATATTGAGCAAGTTTTATATTCCAATGAAAAACATAGCAAGAGGACAGATATGTTTGTGGTATGCGGCAGTGCTACCTATCCTTGAAATTTTCCATTGGACAGCCATTTGTTGGAGCTCTGCATGTCAGTGGCTGCTGAGTTCGAGCC
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| CDS seq | ATGCCCGCATGGTGTTCGAAGGGGTCGGGAGCGATGGCTCGGGGTCGGGGGCGGTGGCTGCTGCCGACGCGGCTGCTGAACGTCTGCCTCGCCGCGCTCTGCCGCGGGGGGAGCCTCGCCGCCGCGGAATCCGTCCTCGTCGACGCCATCCGCCTCGGCCTGCCACCCGACGTCGTCACCTACAACACCCTCCTCGCCGCCCACTGCCGCGCCGCGGGCCTCGAGGCTGGCCTCGTCGTCATGGGACGGATGCGGGAGGCCGGGGTGGAGCCCGACGCCGTCACCTACAACTCCCTCATCGCGGGGGCCGCGCGCCGCGGGCTCCCGATACACGCCCTCGACCTGTTCGACGAAATGCTCCGTTCGGGGATCGCCCCCGACTCCTGGAGTTACAACCCCCTCATGCACTGCCTGTTCCGGTCCGGCCACCCGGAGGATGCCTACCGGGTGTTTGCTGATATGGCTGAGAAAGGCATTGCGCCGTGCGACACCACCTACAACACTCTCCTCGACGGGATGTTCAGGGCCGGTTATGCGATGAACGCATACAGGATGTTCAGGTACCTGCAGAGGGCGGGGCTCCCCGTGAGCATTGTGACTTACAACACCATGATTAACGGGCTGTGCAGTTCAGGCAAGGTGGGCTATGCCCGGATGGTCCTTAGGGAGCTTGGGAGGACTGATCATGCCCCAAATATTATCACTTACACGGCAGTTATGAAATGCTGCTTTAAGTATGGTAGGTTTGAGCAGGGGTTGGACACCTTCTTGTCATTGCTGGACAGAGGGTACATTTCGGATGTCTACCCTTACTGCACAGTGATCAGTGCTTTGGTTAAGAAGGGCCGGTTGGGAGAAGCTAATAATTATTGTGACCTCATGCTACAAAATGGATCTAGGCTTGACAGTGTGTGCTACAACACGCTGATTCACATGCGATGCCAAGAAGGGAAGCTGGATGACGCATTTGAGCTTGTGAGCATGATGGAAGATGGCGGCCTGGAGAGTGATGAGTACACATTCGCAATTTTGGTCAACGGGCTGTGCAAGATGGGACATATCGAGGCTGCAGAAAAGCAGCTATTTTACATGGAGATCAAGGGCATGCAATCTAATGTTGTGGCATACAATTGCTTGGTTGATGCGCTCTGCAAATTTCAAGAGGTGGATGCAGCTATCAGATTACTGCAGTGTATGAAACTAAAGGATGATTTTACTTACACATCACTAGTCCATGGTCTATGTAGGGTGGGTAGATACCATATGGCATCAAAATTCTTGCGAATCTGCTTGCATGAAGGTAATAATGTTCTTGCATCTGCAAAGCGTGCTGTCATTGCTGGGCTTCGTAGCTCAGGGTTTAAAAATGATTTGAGGAAAGTCCGGGTAGCATTAAATATGGCTAAGCTGTTACGACCATAA
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| Protein seq | MPAWCSKGSGAMARGRGRWLLPTRLLNVCLAALCRGGSLAAAESVLVDAIRLGLPPDVVTYNTLLAAHCRAAGLEAGLVVMGRMREAGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRSGIAPDSWSYNPLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLRELGRTDHAPNIITYTAVMKCCFKYGRFEQGLDTFLSLLDRGYISDVYPYCTVISALVKKGRLGEANNYCDLMLQNGSRLDSVCYNTLIHMRCQEGKLDDAFELVSMMEDGGLESDEYTFAILVNGLCKMGHIEAAEKQLFYMEIKGMQSNVVAYNCLVDALCKFQEVDAAIRLLQCMKLKDDFTYTSLVHGLCRVGRYHMASKFLRICLHEGNNVLASAKRAVIAGLRSSGFKNDLRKVRVALNMAKLLRP |
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| Function | Putative pentatricopeptide repeat-containing protein At4g17915 [UniProtKB/Swiss-Prot:P0C043] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g55020 | LOC_Os02g55020.1 | Chr02 | 33706516 | 33708848 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCCGCATGGTGTTCGAAGGGGTCGGGAGCGATGGCTCGGGGTCGGGGGCGGTGGCTGCTGCCGACGCGGCTGCTGAACGTCTGCCTCGCCGCGCTCTGCCGCGGGGGGAGCCTCGCCGCCGCGGAATCCGTCCTCGTCGACGCCATCCGCCTCGGCCTGCCACCCGACGTCGTCACCTACAACACCCTCCTCGCCGCCCACTGCCGCGCCGCGGGCCTCGAGGCTGGCCTCGTCGTCATGGGACGGATGCGGGAGGCCGGGGTGGAGCCCGACGCCGTCACCTACAACTCCCTCATCGCGGGGGCCGCGCGCCGCGGGCTCCCGATACACGCCCTCGACCTGTTCGACGAAATGCTCCGTTCGGGGATCGCCCCCGACTCCTGGAGTTACAACCCCCTCATGCACTGCCTGTTCCGGTCCGGCCACCCGGAGGATGCCTACCGGGTGTTTGCTGATATGGCTGAGAAAGGCATTGCGCCGTGCGACACCACCTACAACACTCTCCTCGACGGGATGTTCAGGGCCGGTTATGCGATGAACGCATACAGGATGTTCAGGTACCTGCAGAGGGCGGGGCTCCCCGTGAGCATTGTGACTTACAACACCATGATTAACGGGCTGTGCAGTTCAGGCAAGGTGGGCTATGCCCGGATGGTCCTTAGGGAGCTTGGGAGGACTGATCATGCCCCAAATATTATCACTTACACGGCAGTTATGAAATGCTGCTTTAAGTATGGTAGGTTTGAGCAGGGGTTGGACACCTTCTTGTCATTGCTGGACAGAGGGTACATTTCGGATGTCTACCCTTACTGCACAGTGATCAGTGCTTTGGTTAAGAAGGGCCGGTTGGGAGAAGCTAATAATTATTGTGACCTCATGCTACAAAATGGATCTAGGCTTGACAGTGTGTGCTACAACACGCTGATTCACATGCGATGCCAAGAAGGGAAGCTGGATGACGCATTTGAGCTTGTGAGCATGATGGAAGATGGCGGCCTGGAGAGTGATGAGTACACATTCGCAATTTTGGTCAACGGGCTGTGCAAGATGGGACATATCGAGGCTGCAGAAAAGCAGCTATTTTACATGGAGATCAAGGGCATGCAATCTAATGTTGTGGCATACAATTGCTTGGTTGATGCGCTCTGCAAATTTCAAGAGGTGGATGCAGCTATCAGATTACTGCAGTGTATGAAACTAAAGGATGATTTTACTTACACATCACTAGTCCATGGTCTATGTAGGGTGGGTAGATACCATATGGCATCAAAATTCTTGCGAATCTGCTTGCATGAAGGTAATAATGTTCTTGCATCTGCAAAGCGTGCTGTCATTGCTGGGCTTCGTAGCTCAGGGTTTAAAAATGATTTGAGGAAAGTCCGGGTAGCATTAAATATGGCTAAGCTGTTACGACCATAA
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| Protein seq | MPAWCSKGSGAMARGRGRWLLPTRLLNVCLAALCRGGSLAAAESVLVDAIRLGLPPDVVTYNTLLAAHCRAAGLEAGLVVMGRMREAGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRSGIAPDSWSYNPLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLRELGRTDHAPNIITYTAVMKCCFKYGRFEQGLDTFLSLLDRGYISDVYPYCTVISALVKKGRLGEANNYCDLMLQNGSRLDSVCYNTLIHMRCQEGKLDDAFELVSMMEDGGLESDEYTFAILVNGLCKMGHIEAAEKQLFYMEIKGMQSNVVAYNCLVDALCKFQEVDAAIRLLQCMKLKDDFTYTSLVHGLCRVGRYHMASKFLRICLHEGNNVLASAKRAVIAGLRSSGFKNDLRKVRVALNMAKLLRP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.401832 | 0.226412 | 0.255353 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0793200 | RBH | 0.630276 | 0.357065 | 1.052191 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g08570 | RBH | 0.037989 | 0.038748 | 0.035344 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0793200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0036700 | RBH | 0.117297 | 1.063469 | 0.931329 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0036810 | RBH | 0.092488 | 1.548460 | 0.688314 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0036630 | RBH | 0.303201 | 0.611205 | 0.948608 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0036270 | RBH | 0.0 | 0.042467 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0036450 | RBH | 0.930883 | 3.759347 | 0.373730 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0552500 | RBH | 1.236627 | 2.603224 | 1.5250195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0036240 | RBH | 0.0 | 0.142322 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0583000 | RBH | 1.2816835 | 2.505909 | 5.7998755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0036490 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0036320 | RBH | 0.0 | 2.174978 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0036550 | RBH | 0.0 | 9.091784 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0036520 | RBH | 0.114346 | 0.495968 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0036140 | RBH | 0.072757 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G036760 | RBH | 0.000000 | 0.549587 | 0.754435 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0036530 | RBH | 0.401883 | 0.000000 | 0.000000 |
