Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g07923 | OGI:01040660 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:3852139-3854472 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTTGATAACGACGTTGGTGGGCTACAAGTTCTTAAAGATGGTGTCTGGTATGATGTCCCAACTAAACCTCACACCTTGCTGATCAACTTAGGAGATCACATGGAGGTAAATATATCTGTCCACGAATGCTGTTTTTCTTGTCACCATTGCATCATGCTATCTTAGCTCTTGCTAAAACTCACTGTCTCACTGTGAGCTTCCCCCTTTTTTGTGTGTGGGTGAACTTACTGTGAGCGGAAGAGGGGAGTTAAAAAGCAAAAAAGCCCCCCGCGTCGCTTTCGCGTCGGGTGGCTCGGGGGCGAAAAACCCTAGCCGCCCGCGCCTTCTCTCCCTCCCTCCCCCCACCTCGCTGTCGCTGGAGCCCGCCGGCGGCGAAGCCGGCAGCGGGCAGGGAAGGCGGTAGCGAGGCCTTCTTCTCTTCGTAGCGTCTCCCTCCTCGGCGCGAAGGACGAAGACGACGAAGCTCTCCACCGGCGTGGTCCGTGGCAGCTACGGCGGCGAGGTGGGGAGGAGACAGCGGATTCGGAGCCCCCATGGCCGGATCCGGCCCTCCCTTGCCTGGATCTGCGCGGCGGCGGCGCGAGGAGGCCTGGGGCGGCGCGACGGCATGCGGTCGTGATGGCGGCCAGCGGCAAGGCGGCGAGGTGGCGGCCGGCTACGGCTAGGCCGGCCCAGCACGGGCGCGGAGGCGGTGGACGGCTGAGGCTCGGCGTGGAGGCGCGCGGAGGCGGCTCGTCAGCGGCGGGCGCGCGCGGCGGATGGCTGCGGCTCGTCGTGGCCGGCCCGGTCGCGGAGGCGGCGGGCAGCGCAGCCTGCCCGGAGCGGCAGCGGCGCCCCCGCTCACTCGCTCGGCCTGGCCGCTCGGCGCCAGCCCATGGCGCGGTGGGTCGTCCAGGCCTCGGTGGCGGCTCAGCTTGGTGGCCGGGCAGCCGGGATGCCGCCGCGGTGGCCAGGTGAGGCGCGGCGGCCGGACTTCGGGGGCGCCGGCGGGTGGTGCCGGTCCGGAGCAGCAGCACCACCGGCGGCCAGATGGCAGTGCAAAGGGAGCTGGCGGCGGTGGGTCGTCTTCCTCGTTGCCGGTCGGCACCCTCGGCCTTCATGGAGCTCCTCCCTTTCTTTGCGGGGAGTTTATAGTTTGGATTGAGGCGGTAGCTTGTCAGTGGGGGAAGCTCAGGCTGCCGAAGCAATGCCACCTAGTCCCGGGTTCTCCTTCGGCCAAATCTGGCGAGGCGGCCGGCGGGTGGTGGAACGGAGGAGTCCTGGGCCAGCTCTCAGGGGTGGTGGTTCGTTGAAGTCGGCCGATGGAGGGGCGTCGGTGCGGTGTGGTGGATGCCACGTGCTGCCATTTGTCTGTGTGGTGGTTCTGAGTTGGTGGACGGCGATCTGCAGTCAAGGTTGTAGGGTCCCAAGCGAAAGCCTAGTCCGGTGGTTCACCGGGCCGACAGCGGCTACGTCTTCGGGCGTCGTAATTTCCTTGGAGCGTTGTCGAGGGTTACCCTCTCCCTTTCTTGGCGAGCTTCTCTGGGTGAAAACCACATCTTTTTAGATGGGCGATGGCGGCATCCTGGATGTCGTGACCACCATGGTGGCATCGTTTTCGGAGCCTCGTCTCTGTGGTGTTGCCGTAGGCCTAGCGGCGTTCGGCCACATTTAGCGGGGGTCGTTTGGTGCTAGGTTTCACCCTCAGCGGTTTGTGCTTGGGTGGTAGTGTGTGGTGTGTGGCAATGCACCTTGGTGCATTTTGATGTTTTTTCTCTTGTAACTTTTATTCCTTCTTAATATACTCGGTTGGCCTCCTTCGGCCTTCCCGGCAAAAAAAAAAACTTACTGTGAGCTTGTCTCTACCAGTATGTTCAAGTTGTGCCATGATGCATCTCCAAGTTCTTGATTCACTGAACTACACATTCTTTTTTGTACAGATAATGAGCAATGGGATTTTTAAGAGCTCGGTGCATAGGGTTATGACAAATCCTGAAAAGGAGAGAATATCAGTGGTGTTGTTTTATTTTATGAATCTTGAGAAAGAGATTGAGCCAGCACTTGAGCTGATCGATGAAAGGCACCCGGCAAGATACAAGAGGGTGAAGATTATGGACTACCTTGCAGGGCTCTTTGAACATTTCTTGCAAGGGACAAGAGTGATTGACACAGTGAAGATCTGAGTCACTATGCCAGTTAAAATAAATAGTGATTGTGATATGTACTCTGTAAAGTTTATCAGAAAAAAAGAACTATTGTAGAGTATGAGTCACATGGTCGCATACTCATGTAATTATGCCATCCAGATCTGTAGCGTTTATCAGAAAAGAAAAATATTATTGTGAGGTTTCA
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| CDS seq | ATGGCTGCGGCTCGTCGTGGCCGGCCCGGTCGCGGAGGCGGCGGGCAGCGCAGCCTGCCCGGAGCGGCAGCGGCGCCCCCGCTCACTCGCTCGGCCTGGCCGCTCGGCGCCAGCCCATGGCGCGGTGGGTCGTCCAGGCCTCGGTGGCGGCTCAGCTTGGTGGCCGGGCAGCCGGGATGCCGCCGCGGTGGCCAGGTGAGGCGCGGCGGCCGGACTTCGGGGGCGCCGGCGGGTGGTGCCGGTCCGGAGCAGCAGCACCACCGGCGGCCAGATGGCAGTGCAAAGGGAGCTGGCGGCGGTGGGTCGTCTTCCTCGTTGCCGGTCGGCACCCTCGGCCTTCATGGAGCTCCTCCCTTTCTTTGCGGGGAGTTTATAGTTTGGATTGAGGCGGTAGCTTGTCAGTGGGGGAAGCTCAGGCTGCCGAAGCAATGCCACCTAGTCCCGGGTTCTCCTTCGGCCAAATCTGGCGAGGCGGCCGGCGGGTGGTGGAACGGAGGAGTCCTGGGCCAGCTCTCAGGGGTGGTGGTTCGTTGA
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| Protein seq | MAAARRGRPGRGGGGQRSLPGAAAAPPLTRSAWPLGASPWRGGSSRPRWRLSLVAGQPGCRRGGQVRRGGRTSGAPAGGAGPEQQHHRRPDGSAKGAGGGGSSSSLPVGTLGLHGAPPFLCGEFIVWIEAVACQWGKLRLPKQCHLVPGSPSAKSGEAAGGWWNGGVLGQLSGVVVR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g07923 | LOC_Os06g07923.1 | Chr06 | 3852391 | 3853963 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTGCGGCTCGTCGTGGCCGGCCCGGTCGCGGAGGCGGCGGGCAGCGCAGCCTGCCCGGAGCGGCAGCGGCGCCCCCGCTCACTCGCTCGGCCTGGCCGCTCGGCGCCAGCCCATGGCGCGGTGGGTCGTCCAGGCCTCGGTGGCGGCTCAGCTTGGTGGCCGGGCAGCCGGGATGCCGCCGCGGTGGCCAGGTGAGGCGCGGCGGCCGGACTTCGGGGGCGCCGGCGGGTGGTGCCGGTCCGGAGCAGCAGCACCACCGGCGGCCAGATGGCAGTGCAAAGGGAGCTGGCGGCGGTGGGTCGTCTTCCTCGTTGCCGGTCGGCACCCTCGGCCTTCATGGAGCTCCTCCCTTTCTTTGCGGGGAGTTTATAGTTTGGATTGAGGCGGTAGCTTGTCAGTGGGGGAAGCTCAGGCTGCCGAAGCAATGCCACCTAGTCCCGGGTTCTCCTTCGGCCAAATCTGGCGAGGCGGCCGGCGGGTGGTGGAACGGAGGAGTCCTGGGCCAGCTCTCAGGGGTGGTGGTTCGTTGA
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| Protein seq | MAAARRGRPGRGGGGQRSLPGAAAAPPLTRSAWPLGASPWRGGSSRPRWRLSLVAGQPGCRRGGQVRRGGRTSGAPAGGAGPEQQHHRRPDGSAKGAGGGGSSSSLPVGTLGLHGAPPFLCGEFIVWIEAVACQWGKLRLPKQCHLVPGSPSAKSGEAAGGWWNGGVLGQLSGVVVR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g07923 | LOC_Os06g07923.2 | Chr06 | 3852139 | 3854472 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTTGATAACGACGTTGGTGGGCTACAAGTTCTTAAAGATGGTGTCTGGTATGATGTCCCAACTAAACCTCACACCTTGCTGATCAACTTAGGAGATCACATGGAGATAATGAGCAATGGGATTTTTAAGAGCTCGGTGCATAGGGTTATGACAAATCCTGAAAAGGAGAGAATATCAGTGGTGTTGTTTTATTTTATGAATCTTGAGAAAGAGATTGAGCCAGCACTTGAGCTGATCGATGAAAGGCACCCGGCAAGATACAAGAGGGTGAAGATTATGGACTACCTTGCAGGGCTCTTTGAACATTTCTTGCAAGGGACAAGAGTGATTGACACAGTGAAGATCTGA
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| Protein seq | MVDNDVGGLQVLKDGVWYDVPTKPHTLLINLGDHMEIMSNGIFKSSVHRVMTNPEKERISVVLFYFMNLEKEIEPALELIDERHPARYKRVKIMDYLAGLFEHFLQGTRVIDTVKI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.760647 | 0.935082 | 0.308962 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0743732 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0743732 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0087000 | SBH | 0.503022 | 1.8112755 | 1.6770515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0085900 | SBH | 0 | 0.0675565 | 0.011303 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017200 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
