Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os05g04380		OGI:05005850 \| 1/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr05:2010115-2015088		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		PRX65, prx65, OsPRX65
DNA seq		GATATATATACCACCTGCCACCCCTTCTTCTCCTCTCCACCCCCCTCTCTGCTTCCCTCCACACTGCCTCGCCAACCAACCACCGCTACACACGAGGCGGCGCGTGGCCGGAGAGCGAGAAAAGGCGACGTACCCATCGATAGCGAGAAATTAAGTTGCCGGAGAGGAGGAGGATGACGATGAGGTTGGCGGCGGCGGTGGTGGTGATGGTGGTGGTGGCGGCGGCGGCGATGTCGGTGGAGGCGGAGCTGAGCGTGGATTACTACAAGAAGAGTTGTCCCGGAGTGGAGAACGTGGTGAGGTACCATGTCGCCAAGGCGCTCAAGGCGAATCGCAAGGAAGGCGCCGCCCTCGTCCGCCTCATCTTCCACGACTGCTTCGTCAGGGTAATTATCTCAATCAGATAATTAACTTTCTTGCATATCAATTATTGTAGCGGCTCATGATTGATCCATCCATATATATCAATCTACATTTGCAGTACGTACTAGCTAAGGTTTACTAGCTAGCTTAACTGTTAGTTAGTTGTGTGTGTACATAGTACAACTTGGCTTTGCAGAGTTTAGTTGTGTTACAGTTGGTTTCATTCTTCAGAATCACTCATCAGGTGATCGATCCATCGAGGAAACTTATCACATTCTAGCTAGGTTAGTTGATTAATTAATAAGGAAAACAACTTTACTCTTGATGGAAATAACAGCAACATTTACACAAACTAACTAAGCAACTACTCAATCAGCATCTTATCTTACACCAACGTCGTCGTCGCCGCATAAGCGTGTATGAGAAATGATCAAATCTTAAGCTAATATACATAACACAGCTTCTTAGTTAAGTCTCTGAACCCCACTTGGTTGGTTGTTGTCAAGATCAACACAGATAGTTATCAGCAAGTTAGCAGCCACACGCCACTGCATTTGACACACTGTCATCACTCCATCCAGAGACAGTTTCTTCTTCTTTCTCTTCCTTTCTTTCCATGCACAAAAGAAAAGAAAAGTTCAATGGAGACCTAGCTAAGCTAAGCTAAGCTAGTTTCGTGAGCTACTTGACTTCTACTAGTTCACTACTAATCCAACATGGCAAGAGAGAGAAACTAAAGGTAGATTAGAGAGAGAAAGATAGATAGATAGAGAGAGAGAGAGAGATTGGTAGCCAGCAATTCAGCATCTGCAACATGCATGCTGGAATCGAATGTGATACTTTCCTTGTGTCCATCATTTGGACTGTCAATGCATGCTACACCTTTTTTTTTCCCTTCTGGCTGCTTAGCTAAACACATAATTAAGCTGCATTAGCTTAGCTTAATTAGCTCTAGGGTCCCAGAAACACTATGCCCTTGTCGTCAGTTTATTCCCTCTCCTTTCTTTTCTCTGCATGGGTGCCAGCCAGATGCAGCTGCTGCTGATGTTGCTGTGATTGGCAAGCAACATGTAACTACCTATTCAATTGGTTCATGCATCATCAGTACGTTTTGCATACACACAAATAATTAATTAATTAGACTCTCATGTATATCATATTAGTAGTAGTAGTAGTTAAACATGATTTTATTGGTGTTCGATTTCTAGGTAAGCTCAATTAGTGGGATATGATTATGTTTGGATTGTGCTTGGGGCCAGAGCTTCTTTGCTTCCTATGGGGCAAATTGTTTTCTTGTGCTGATTGTCTAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAAAGGACACATATGGGAGAGAAAAGGGGACACTGTGTTGAGAAAGAGAAAGCATACCTATATCTCTCCAGAGTCATGACCAATAATTGGTACCACTAGCTCCTCAGTCATGAATAGAAAAGAGAGTAAAAGTAATTAATTGAACTTTTTTTTACTTACCCTTTTGATTAACAAGTAATTAGTGCATGTTCTGACAGAGTTTCAGCACTCTCATCCAAGCAAGCATCCTAGCTTACTTGGCTCTAAAAGTTCTTGGAGTTGCATTTGTTCTGATTAAATTACATATTTTGATTGGTTTGTGCGAGCCAATTTGTGTTCATGTTATTAGACTAAAAATATAGAGTGAAACTATTTTATTTAGACATGCAAGAATACAACATAGGTCATTAGTGGCTACGGAATTGAATGAGCACATTATAGACGAAATGGTCGGTAGCATCGGTAGTCTTTCTTTTTGTTCTCCTCTTTTTAAGAAAATAATAAAAGAAGATGATGTACATATATACAAGTTGCAGCATGCATGGACTTTTCGTTGTGTGGTTTAAGCATCAGCAGCAATAGAACTGTTCAAGTAATTAAGAACCAATAATGCATTTGCCCTCTCACCGACACTACATATGCAATTATATGTGCATATCGTTTTCCAACAACTCAGCTGACGATGATCAATCGATCGATCTATCACACATTTTTCTCAAGGGGCTCTAATATAATTAAAGGTTTATTTGCCATAGCTTCAGCTCCATCTTTTAAAAGTTGGAGCTCAACGAAACAGTTTCAGCTCCATCTAAAATAAGAGTAGATCTGGTTGAAGCATTCTCACAAAATAAATTAGAGAGGTGGAGCTAGATTTAGACTGTTCCACAACTCCACTCCAAATCCAACTCTTAAAACTAAATTTAAGAGTTGGAGCTCTATCAAACAGATCCTAACTGTGCTTAAGTACAGATAGGATGACTTGCCAAGCACACATATAGTTAACAGTATTAGTATTAACTACTAGTGTTTTGGACGGTGGAACAAGAGTAGGAGGTATGAGATCGATGATGTGTGGAATTAATTGAACGATTCCGTGGAGATGTTTGGTCCAAAGGACGGTATGATTCGGCCTAGTAGTGTTAGGCTCATTGGTTGAGAGAATAAAGAAGGATGAAACAACTATAGAATAAGTAGCATTTTAATACAAAACAAATTTAATATAATGATATTTTTAATTATGGATTTAATAAAACTAATTCGGTGTTTTATATGTTGCTAAGTTTTTAACAAGCTTGGTCAAACTTGATATAGTTTGACATAGGTCAAAAAAAACGTCTTATAATATGGTGTGGAAGATTGTTAATTGACTAACTACCTAAATTGGGGTATATAGAGAACTTCAACATATGCAGAGTGTTTAAGGCATTATTAGTTGACTACATTGCGCGTGCTTAATTTTTTATCAATTGTATTGTCTAATCATGTGATAATTACCGTTAGCTAACATAATTATGACATACATTTAAATCTTACCCCGATATTCACTAATCCCAAAACATCTAATTGTTACCAGTCAAATTTATGGATCATTCCTGCTTATCCTACTATGGTTCTACTTGTACAATGCAGAAATTCTGAAATATTTCTGCCTAAAAAAATTCAAAATTCGAACAAATTTTAGTATAACGATTTGACCTTTTTTTACCACGCAAACAATTTTAAGTTTGGTCAAGTTTATGAAAACTTTTTGTATTTGAATTGTTTGGCGCCATTGATTAATTACAATGTAAAAAATGCACGACAAATTTGAATTCTCAATTGGTTGCTGATTATAGTAATTTTTTTTTTAAAAAAACGCGCGAATGTTAATGATCGATTTGAATTGGAATGGGTGGTGCAGGGGTGCGACGCGTCGGTGCTGCTGGACCCGACGGCGGAGAACCCGCACACGGAGAAGACGGCGCCGATCAACATCGGCCTCGCCGCGTTCGAGCTCATCGACGAGATCAAGGCGGCGGTGGAGGAGCGGTGCCCGGGCGTGGTCTCCTGCGCCGACATCGTCATCTACGCCGCCCGCGACGCCTCCATCCTCCTCAGCAACGGCCACGTCCACTTCGACGTCCTCGCCGGCCGCCTCGACGGCCGCGTCTCCCGCGCCGCCGACGCCCAGCGCGACCTCCCGGACTCCACCTTCACCATCTCCGAGCTCATCCGCAACTTCCGCCGCAAGAACTTCACCATCGAGGAGCTCGTCATCCTCTCCGGCGCCCACGCCGTCGGCGTCGGCCACTGCTCCTCCCTCCGCGCCCGCCTCACCGCGCCACCCGAGCAGATCCTCCCGGGATACCGCAGCCTCCTCGCCGGCAAGTGCGCCGCCGGCGAGGACCCGATCGTGCCCAACAACGTCCGCGACGAGGACCCCGCCGCCGTCGCCGCCACCATCCCGTCCTTCCTCCCGAAGCTGAGGAAGTTCGAGTTCTTGGACAACAGCTACTACCACAACAACCTCGCGAGGATCGTCACCTTCAACTCCGATTGGCAGCTGCTCACGGAGAAGAAGGCGCGCGGCCATGTCCACGAGTACGCCGACAATGGCACGCTCTGGGACGAGGATTTCTCCGACGCGCTCGTCAAGCTCAGCAAGCTGCCATTGCCGCCCAAGGCCAAGGGCGAGATCCGCCGCCATTGCCGCCGCGTCAACACCCACCACTACTGATTCTTCATCCTCATCATCCCAACATCAAGCCTTCCATCTTGAGCTCTCATCTGCATCCTCATTTTCAATAATTCTTTGTTTCATTATTCGCATGGTTGGTTCATCATCGTCGTTTAATTTTGTGTATCTTGTTCTTTTTTTTGATTTGTTGGTGCTCGTCGATCTCGTGTTGAATTGGTTTAATTTTGTGTTGAATTCTACGCGCATGTGTATGTGAGAACACCAGTACAGCGAGAATTCATGGTGTATAGTAGCTTTTGTGTTGTTGCATTCTCTGTCTATTGGTGTCAAAAAGAAAGAAAGTTAATTAGTTGTTGTTTTTTTTTTTGGTATGGTTTGGATTGGATTTGTATTCATCCATCCAAAACTTTCTCCATTTTCATGTAATAAGGAGGGATTACAGAAAGATCGATATATGGCACTGGCCACTTCAATTATGTTCCATTTCCAGTTTTAACTGTGATGAGCAAGCCCTACTGTCATTGCTAGTCCAGATCCTCTGTTTTTAATGGATGTCAATTTGCTTCTAGCAAAAAGGAAACATGAAATGAAAAGAAAAGAAGCACAAAATTAT More
CDS seq		ATGACGATGAGGTTGGCGGCGGCGGTGGTGGTGATGGTGGTGGTGGCGGCGGCGGCGATGTCGGTGGAGGCGGAGCTGAGCGTGGATTACTACAAGAAGAGTTGTCCCGGAGTGGAGAACGTGGTGAGGTACCATGTCGCCAAGGCGCTCAAGGCGAATCGCAAGGAAGGCGCCGCCCTCGTCCGCCTCATCTTCCACGACTGCTTCGTCAGGGGGTGCGACGCGTCGGTGCTGCTGGACCCGACGGCGGAGAACCCGCACACGGAGAAGACGGCGCCGATCAACATCGGCCTCGCCGCGTTCGAGCTCATCGACGAGATCAAGGCGGCGGTGGAGGAGCGGTGCCCGGGCGTGGTCTCCTGCGCCGACATCGTCATCTACGCCGCCCGCGACGCCTCCATCCTCCTCAGCAACGGCCACGTCCACTTCGACGTCCTCGCCGGCCGCCTCGACGGCCGCGTCTCCCGCGCCGCCGACGCCCAGCGCGACCTCCCGGACTCCACCTTCACCATCTCCGAGCTCATCCGCAACTTCCGCCGCAAGAACTTCACCATCGAGGAGCTCGTCATCCTCTCCGGCGCCCACGCCGTCGGCGTCGGCCACTGCTCCTCCCTCCGCGCCCGCCTCACCGCGCCACCCGAGCAGATCCTCCCGGGATACCGCAGCCTCCTCGCCGGCAAGTGCGCCGCCGGCGAGGACCCGATCGTGCCCAACAACGTCCGCGACGAGGACCCCGCCGCCGTCGCCGCCACCATCCCGTCCTTCCTCCCGAAGCTGAGGAAGTTCGAGTTCTTGGACAACAGCTACTACCACAACAACCTCGCGAGGATCGTCACCTTCAACTCCGATTGGCAGCTGCTCACGGAGAAGAAGGCGCGCGGCCATGTCCACGAGTACGCCGACAATGGCACGCTCTGGGACGAGGATTTCTCCGACGCGCTCGTCAAGCTCAGCAAGCTGCCATTGCCGCCCAAGGCCAAGGGCGAGATCCGCCGCCATTGCCGCCGCGTCAACACCCACCACTACTGA More
Protein seq		MTMRLAAAVVVMVVVAAAAMSVEAELSVDYYKKSCPGVENVVRYHVAKALKANRKEGAALVRLIFHDCFVRGCDASVLLDPTAENPHTEKTAPINIGLAAFELIDEIKAAVEERCPGVVSCADIVIYAARDASILLSNGHVHFDVLAGRLDGRVSRAADAQRDLPDSTFTISELIRNFRRKNFTIEELVILSGAHAVGVGHCSSLRARLTAPPEQILPGYRSLLAGKCAAGEDPIVPNNVRDEDPAAVAATIPSFLPKLRKFEFLDNSYYHNNLARIVTFNSDWQLLTEKKARGHVHEYADNGTLWDEDFSDALVKLSKLPLPPKAKGEIRRHCRRVNTHHY
Function		Peroxidase 2 [UniProtKB/Swiss-Prot:Q9FEQ8]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os05g04380	LOC_Os05g04380.1	Chr05	2010115	2015088	+	MSU_osa1r7
CDS seq	ATGACGATGAGGTTGGCGGCGGCGGTGGTGGTGATGGTGGTGGTGGCGGCGGCGGCGATGTCGGTGGAGGCGGAGCTGAGCGTGGATTACTACAAGAAGAGTTGTCCCGGAGTGGAGAACGTGGTGAGGTACCATGTCGCCAAGGCGCTCAAGGCGAATCGCAAGGAAGGCGCCGCCCTCGTCCGCCTCATCTTCCACGACTGCTTCGTCAGGGGGTGCGACGCGTCGGTGCTGCTGGACCCGACGGCGGAGAACCCGCACACGGAGAAGACGGCGCCGATCAACATCGGCCTCGCCGCGTTCGAGCTCATCGACGAGATCAAGGCGGCGGTGGAGGAGCGGTGCCCGGGCGTGGTCTCCTGCGCCGACATCGTCATCTACGCCGCCCGCGACGCCTCCATCCTCCTCAGCAACGGCCACGTCCACTTCGACGTCCTCGCCGGCCGCCTCGACGGCCGCGTCTCCCGCGCCGCCGACGCCCAGCGCGACCTCCCGGACTCCACCTTCACCATCTCCGAGCTCATCCGCAACTTCCGCCGCAAGAACTTCACCATCGAGGAGCTCGTCATCCTCTCCGGCGCCCACGCCGTCGGCGTCGGCCACTGCTCCTCCCTCCGCGCCCGCCTCACCGCGCCACCCGAGCAGATCCTCCCGGGATACCGCAGCCTCCTCGCCGGCAAGTGCGCCGCCGGCGAGGACCCGATCGTGCCCAACAACGTCCGCGACGAGGACCCCGCCGCCGTCGCCGCCACCATCCCGTCCTTCCTCCCGAAGCTGAGGAAGTTCGAGTTCTTGGACAACAGCTACTACCACAACAACCTCGCGAGGATCGTCACCTTCAACTCCGATTGGCAGCTGCTCACGGAGAAGAAGGCGCGCGGCCATGTCCACGAGTACGCCGACAATGGCACGCTCTGGGACGAGGATTTCTCCGACGCGCTCGTCAAGCTCAGCAAGCTGCCATTGCCGCCCAAGGCCAAGGGCGAGATCCGCCGCCATTGCCGCCGCGTCAACACCCACCACTACTGA More
Protein seq	MTMRLAAAVVVMVVVAAAAMSVEAELSVDYYKKSCPGVENVVRYHVAKALKANRKEGAALVRLIFHDCFVRGCDASVLLDPTAENPHTEKTAPINIGLAAFELIDEIKAAVEERCPGVVSCADIVIYAARDASILLSNGHVHFDVLAGRLDGRVSRAADAQRDLPDSTFTISELIRNFRRKNFTIEELVILSGAHAVGVGHCSSLRARLTAPPEQILPGYRSLLAGKCAAGEDPIVPNNVRDEDPAAVAATIPSFLPKLRKFEFLDNSYYHNNLARIVTFNSDWQLLTEKKARGHVHEYADNGTLWDEDFSDALVKLSKLPLPPKAKGEIRRHCRRVNTHHY More

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os05g04380	LOC_Os05g04380.2	Chr05	2010115	2015088	+	MSU_osa1r7
CDS seq	ATGACGATGAGGTTGGCGGCGGCGGTGGTGGAGCGGTGCCCGGGCGTGGTCTCCTGCGCCGACATCGTCATCTACGCCGCCCGCGACGCCTCCATCCTCCTCAGCAACGGCCACGTCCACTTCGACGTCCTCGCCGGCCGCCTCGACGGCCGCGTCTCCCGCGCCGCCGACGCCCAGCGCGACCTCCCGGACTCCACCTTCACCATCTCCGAGCTCATCCGCAACTTCCGCCGCAAGAACTTCACCATCGAGGAGCTCGTCATCCTCTCCGGCGCCCACGCCGTCGGCGTCGGCCACTGCTCCTCCCTCCGCGCCCGCCTCACCGCGCCACCCGAGCAGATCCTCCCGGGATACCGCAGCCTCCTCGCCGGCAAGTGCGCCGCCGGCGAGGACCCGATCGTGCCCAACAACGTCCGCGACGAGGACCCCGCCGCCGTCGCCGCCACCATCCCGTCCTTCCTCCCGAAGCTGAGGAAGTTCGAGTTCTTGGACAACAGCTACTACCACAACAACCTCGCGAGGATCGTCACCTTCAACTCCGATTGGCAGCTGCTCACGGAGAAGAAGGCGCGCGGCCATGTCCACGAGTACGCCGACAATGGCACGCTCTGGGACGAGGATTTCTCCGACGCGCTCGTCAAGCTCAGCAAGCTGCCATTGCCGCCCAAGGCCAAGGGCGAGATCCGCCGCCATTGCCGCCGCGTCAACACCCACCACTACTGA More
Protein seq	MTMRLAAAVVERCPGVVSCADIVIYAARDASILLSNGHVHFDVLAGRLDGRVSRAADAQRDLPDSTFTISELIRNFRRKNFTIEELVILSGAHAVGVGHCSSLRARLTAPPEQILPGYRSLLAGKCAAGEDPIVPNNVRDEDPAAVAATIPSFLPKLRKFEFLDNSYYHNNLARIVTFNSDWQLLTEKKARGHVHEYADNGTLWDEDFSDALVKLSKLPLPPKAKGEIRRHCRRVNTHHY More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	2.099061	0.237048	2.328074

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_05g0134400	RBH	3.445398	0.391212	10.038723
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os01g19020	RBH	1.330772	2.086429	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os05g0134400	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_05g0002510	SBH	0.0	18.434811	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_05g0002540	SBH	0.0	47.219761	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_05g0002540	SBH	0.000000	94.871918	0.000000
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_05g0002480	SBH	0.0	0.807483	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_05g0002560	SBH	0.000000	86.117538	0.000000
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_05G0031100	SBH	0	1.391594	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_05g0002500	SBH	0.000000	10.882762	0.000000
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_05G0030000	SBH	22.812691	34.709117	1.7404315
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_05g0002500	SBH	0.0	0.000000	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_05g0002420	SBH	0.0	51.780743	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_05g0002530	SBH	0.0	65.718643	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_05g0002540	SBH	0.000000	7.313235	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_05g0002560	SBH	0.000000	78.747391	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_05G002400	SBH	0.000000	23.176012	0.000000
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_05g0002590	SBH	0.000000	189.144211	0.000000

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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