Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g02300 | OGI:05002070 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:738204-739079 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAAATCCAAATCGGCGCCGGAAATCCCTTCAAATCCCCCCCGAATTCCGCTCCATTTCACCCTCACGTTTCCCGGAGATGGACGTCGGCGTCGGCGGCAAGGCGGCGAAGAAGGCGGTGGGGCGGAAGCTGGGCGGGCCGAAGAAGAAGCCGGTGTCGCGCTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGCCGCTACCTCAAGAAGGGCCGCTACGCCCAGCGCGTCGGCACCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCAGAGGCAAGCCACTGTTTATCCCTTCCTCTCCCAAATCCTTCCAAACCCAGCATGGTTGACCGGGATCGTGTTGTTGATGCAGGTGCTGGAGCTCGCCGGGAACGCGGCGCGGGACAACAAGAAGAACCGGATCATCCCGAGGCACGTGCTGCTGGCGATCCGCAACGACGAGGAGCTCGGGAAGCTGCTCGCCGGGGTCACCATCGCGCACGGCGGCGTGCTGCCGAACATCAACCCGGTGCTGCTCCCGAAGAAGACCGCGGAGAAGGCCGACAAGCCGGCCAAGGCGTCCAAGGACAAAGCCGCCAAGTCCCCCAAGAAGCAGGCGCGCTCCTAGCTTCATGTCCTTCCATTCATTGGTCACTGTATATGCAGTACTTAGTTTGTTCGATTCGAGATTAGTTCGTATCACTAGGCATTTAACTGGATGTTTTCGATTTTAGCTTGCAAGACACTAGGGTAGTTCTAATGAGAAGATGAAGTGTCTCGCTTTGTCTTCTGGATCCCATGTGCTTCAATATGTGGTTTCTCAATTGAAATTTGTTTGTGTTCAGTAAGTTTAATAGCCTGATTGTGAATCTGATCT
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| CDS seq | ATGGACGTCGGCGTCGGCGGCAAGGCGGCGAAGAAGGCGGTGGGGCGGAAGCTGGGCGGGCCGAAGAAGAAGCCGGTGTCGCGCTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGCCGCTACCTCAAGAAGGGCCGCTACGCCCAGCGCGTCGGCACCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCAGAGGTGCTGGAGCTCGCCGGGAACGCGGCGCGGGACAACAAGAAGAACCGGATCATCCCGAGGCACGTGCTGCTGGCGATCCGCAACGACGAGGAGCTCGGGAAGCTGCTCGCCGGGGTCACCATCGCGCACGGCGGCGTGCTGCCGAACATCAACCCGGTGCTGCTCCCGAAGAAGACCGCGGAGAAGGCCGACAAGCCGGCCAAGGCGTCCAAGGACAAAGCCGCCAAGTCCCCCAAGAAGCAGGCGCGCTCCTAG
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| Protein seq | MDVGVGGKAAKKAVGRKLGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADKPAKASKDKAAKSPKKQARS |
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| Function | Probable histone H2A.6 [UniProtKB/Swiss-Prot:Q75L11] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g02300 | LOC_Os05g02300.1 | Chr05 | 738204 | 739079 | + | MSU_osa1r7 | ||
| CDS seq | ATGGACGTCGGCGTCGGCGGCAAGGCGGCGAAGAAGGCGGTGGGGCGGAAGCTGGGCGGGCCGAAGAAGAAGCCGGTGTCGCGCTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGCCGCTACCTCAAGAAGGGCCGCTACGCCCAGCGCGTCGGCACCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCAGAGGTGCTGGAGCTCGCCGGGAACGCGGCGCGGGACAACAAGAAGAACCGGATCATCCCGAGGCACGTGCTGCTGGCGATCCGCAACGACGAGGAGCTCGGGAAGCTGCTCGCCGGGGTCACCATCGCGCACGGCGGCGTGCTGCCGAACATCAACCCGGTGCTGCTCCCGAAGAAGACCGCGGAGAAGGCCGACAAGCCGGCCAAGGCGTCCAAGGACAAAGCCGCCAAGTCCCCCAAGAAGCAGGCGCGCTCCTAG
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| Protein seq | MDVGVGGKAAKKAVGRKLGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADKPAKASKDKAAKSPKKQARS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.207155 | 0.0 | 1.733302 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0279200 | SBH | 3.789068 | 4.647854 | 28.561060 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g17100 | SBH | 2.378069 | 2.904165 | 6.748287 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0113900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0001030 | RBH | 0.000000 | 9.723615 | 2.213185 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0012870 | SBH | 0.482491 | 38.821922 | 6.915163 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0001080 | RBH | 0.663961 | 4.758004 | 1.980613 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0000980 | RBH | 0.0 | 1.473124 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0000990 | RBH | 0.0 | 13.334863 | 1.457160 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0012100 | RBH | 46.0086215 | 9.688857 | 15.7100535 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0001000 | RBH | 0.0 | 1.647084 | 0.214985 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0012400 | RBH | 22.6919875 | 0.4330815 | 88.76136 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0001030 | RBH | 0.0 | 0.842984 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0000950 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0001010 | RBH | 0.0 | 43.316280 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0001010 | RBH | 0.0 | 0.796776 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0001020 | RBH | 0.0 | 17.026499 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G000950 | RBH | 0.0 | 11.250377 | 5.285928 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0001050 | RBH | 0.0 | 19.511801 | 0.979919 |
