Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0279200 | OGI:03025860 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:9498973-9499826 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAATGGAAACATCTCTGAAGAAAAATTTAACATCTCTTAAATTTATCTTCTTGAACAGACACAAGCACAGATCACAAGGTTCAACGACACCACCATAGATTAAATCAACAGCATTAGACTACTAACAGACACACATCCCGTCCAATCTACTCCAGCTAAACAAGCAAAGCGAGGCGCCGACGCCTAGGCCTTCTTGGGGGACTTCCCGGCGGCCTTCTTGGGCGACTTGGCCTCCTTGCCGGCGGCGGCGGCCTTCTCCGCCGTCTTCTTGGGCAGCAGCACCGGGTTGATGTTGGGCAGCACGCCTCCGTGCGCGATGGTCACGCCGGCCAGCAGCTTGCCGAGCTCCTCGTCGTTCCTGATCGCCAGCAGCACGTGGCGCGGGATGATCCTGTTCTTCTTGTTGTCCCTGGCCGCGTTCCCGGCGAGCTCCAGCACCTAAGCAATCGAACAGAGAGGACACCACCAGATCAGCACCACAAATCGAAATCTGCAGATGAGGCTGACGACAAAGTGGGGGAGTGGGCGAGCGTTGTTACCTCGGCAGCGAGGTACTCGAGGACGGCGGCGAGGTAGACGGGGGCGCCGGTGCCGATGCGCTGGGCGTAGCGGCCCTTCTTGAGGTAGCGGCCGATACGGCCGACGGGGAACTGGAGCCCGGCCTTGACGGAGCGCGACACCGCCTTCTTCCTCGGCCCGCCGGCCTTCCTCCCGGCGGCTCCCTTCTTCAACTTCCCACCCGCTCCGGCTCCGGCGGCGTCCATGGCTAGCCTAGCTAAGCTGGTTGCTGCTGCTGTCGAAGGCGAGGAGGATTTTTTTTTCCCTTTTCTTTAGTCGAATGCGATATGGCGAT
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| CDS seq | ATGGACGCCGCCGGAGCCGGAGCGGGTGGGAAGTTGAAGAAGGGAGCCGCCGGGAGGAAGGCCGGCGGGCCGAGGAAGAAGGCGGTGTCGCGCTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGTATCGGCCGCTACCTCAAGAAGGGCCGCTACGCCCAGCGCATCGGCACCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCTGCCGAGGTGCTGGAGCTCGCCGGGAACGCGGCCAGGGACAACAAGAAGAACAGGATCATCCCGCGCCACGTGCTGCTGGCGATCAGGAACGACGAGGAGCTCGGCAAGCTGCTGGCCGGCGTGACCATCGCGCACGGAGGCGTGCTGCCCAACATCAACCCGGTGCTGCTGCCCAAGAAGACGGCGGAGAAGGCCGCCGCCGCCGGCAAGGAGGCCAAGTCGCCCAAGAAGGCCGCCGGGAAGTCCCCCAAGAAGGCCTAG
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| Protein seq | MDAAGAGAGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA |
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| Function | Probable histone H2A.5 [UniProtKB/Swiss-Prot:Q94E96] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0279200 | OsNip_03t0279200-01 | Chr03 | 9498973 | 9499826 | - | RAP2018-11-26 | ||
| CDS seq | ATGGACGCCGCCGGAGCCGGAGCGGGTGGGAAGTTGAAGAAGGGAGCCGCCGGGAGGAAGGCCGGCGGGCCGAGGAAGAAGGCGGTGTCGCGCTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGTATCGGCCGCTACCTCAAGAAGGGCCGCTACGCCCAGCGCATCGGCACCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCTGCCGAGGTGCTGGAGCTCGCCGGGAACGCGGCCAGGGACAACAAGAAGAACAGGATCATCCCGCGCCACGTGCTGCTGGCGATCAGGAACGACGAGGAGCTCGGCAAGCTGCTGGCCGGCGTGACCATCGCGCACGGAGGCGTGCTGCCCAACATCAACCCGGTGCTGCTGCCCAAGAAGACGGCGGAGAAGGCCGCCGCCGCCGGCAAGGAGGCCAAGTCGCCCAAGAAGGCCGCCGGGAAGTCCCCCAAGAAGGCCTAG
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| Protein seq | MDAAGAGAGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0279200 | OsNip_03t0279200-02 | Chr03 | 9498988 | 9499826 | - | IsoSeq | ||
| CDS seq | TCGCCATATCGCATTCGACTAAAGAAAAGGGAAAAAAAAATCCTCCTCGCCTTCGACAGCAGCAGCAACCAGCTT |
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| Protein seq | SPYRIRLKKREKKILLAFDSSSNQL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.789068 | 4.647854 | 28.561060 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0461400 | RBH | 5.520901 | 13.501151 | 33.490776 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g17100 | RBH | 2.378069 | 2.904165 | 6.748287 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0279200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0013060 | RBH | 0.953453 | 97.848732 | 1.591487 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0012870 | RBH | 0.482491 | 38.821922 | 6.915163 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0012890 | RBH | 2.640321 | 94.043571 | 5.754644 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0012860 | RBH | 0.310697 | 4.893472 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0012720 | RBH | 2.609342 | 177.123001 | 16.735825 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0162100 | RBH | 306.3256835 | 48.7912865 | 82.708656 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0012620 | RBH | 0.472927 | 10.824203 | 0.725781 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0163500 | RBH | 251.8610765 | 1.424221 | 764.33786 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0012780 | RBH | 0.672531 | 3.051584 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0012800 | RBH | 0.452603 | 115.967163 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0012850 | RBH | 2.811136 | 189.219437 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0012730 | RBH | 2.062258 | 11.500705 | 2.276711 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0012700 | RBH | 0.142764 | 52.750843 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G012650 | RBH | 1.131681 | 53.276123 | 15.818140 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0012520 | RBH | 0.000000 | 70.501930 | 10.419298 |
