Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g59160 | OGI:04103080 | 4/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:35192194-35193779 | ||||||||
| Gene Symbol | prx60, POX-1 | ||||||||||
| DNA seq | AAACGGTATCAAATATTTGGAAACGGATTGAGTATTATAATTCTCAAACATCTCTCGATCGTACCTCAAAGGATTGACGACGAGCCAAGGCATCTTCAACAGATTAAAGATACTCTTATTAAACTATACGTCACGTACGTGGGACGCACTGCACTACAAAGTACGTACGCAGTATTATCATGCACGCACGAGACGGCTAGCTAGTGCTCAGATCAAGAACAAGATCGAGTCTTGTACAACACAAGACTTTTGACGTGATGATGTCAAGCAGATGCCGTGAAGCCATCGTCGCCGGCGGCCGCAAGGATGGTCTGGCTGTTGGGCACGAAGCAGCTGTTGCGGCGGATCTCGCCGACGTTCCCTGAAGGACCCTGGAGCTGTCCCAGCTTCACCATGGAGCTGCCGAACTGGCCGTAGAACCACCAGTGGTTGCCGGCGAAGCCATTGACCACCCAGCTGGTGCGCCAGTCGCCGGTGAGCCCCTGGTCGGAGGTGAACACCCCCTGACCGGCCACCAGGTTGCTGTAGTACTTGTTGTCGAACACGTCCGGGGTGGTGACATCAAGCTCCTGCAGGCGGCTGCCGTCGTTAGAGCAGTTGGCGGCGAGCCTCCTGGCGAAGTCGTCGTCCTCGCGGAAGCGGTTGGAGAAGGAGCTGCATCGCGCCCTGCCGATGGAGTGGCCGCCGGAGAGCGCGACGAGGTCGACGTTGTCGAGGTTGCGGGTCTGGAAGGCGCTGAGCAGCGTGGAGACGTCGGAGGTGGGCTGCGGGAGCTGGAAGACGGCGTCGCTGGGAGCCGGCGCGAAGCTGTCGAGGCGGCCGAGCGGCACGTCGTAGGGCAGACCACCGGACTGCAATGCAAGCATCGATCAGTACGTTGATGCAGTATATATATATGCACAATGGGCAAACATGTATCGATCTGTACGTACGGCGACGATGGCGTCGCGGGTGGCGAGGGCGGTGATGTCGGCGCAGGAGACGGTGGGGCCGCATGCGGCGTGCACCTGGGCGCGGATGTCCTCGATGAGCTGCAGCGCCCGTGGTTGCAGAGTCAGGTTGGGCGGCAGCTGCTGCTCGCTGTTGGCTCCCGTCAGAAGCAGCGACGCGTCGCAGCCCTGCAAATTCAATTAGGTTAATTAGGTTAGGTTGACAGAGCTAGCTAACCTAGTGTTCATTACTTAATCAACAACAAAATCAGTAACAAGTACCTGGGGGAAGCAGTCGTGGAAGAAGATGCGGAGGAGGCCGGCGGCGAGGGCGATCTCCTGCTGGAGCGCCGCCTGCACGGCGGAGCGCACGGTGGTCTCCAGCTGCGGGCACGAGTCGCTGTAGAGGTCGAAGCCGAGGCCGTCGGCGAGGGGCGGCGTAGTGATTGGAAGATGGTCGGTGGGCAGAGAGATGAACCGTGCGGACACTGCCGGCGAGAGCAGAGTAGCAATGGCCAAGAGCACAAGAATGATGCCCATTCTTCTCAACGCCATCGTATCGATGGATCGAATCCTAATTAACCTAAGCTAATTACTCGTTTCCCAACCTTAATTACACCCACACTGTGGTGATGTGATCTGTCCTCGGTCCCGTCC
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| CDS seq | ATGGCGTTGAGAAGAATGGGCATCATTCTTGTGCTCTTGGCCATTGCTACTCTGCTCTCGCCGGCAGTGTCCGCACGGTTCATCTCTCTGCCCACCGACCATCTTCCAATCACTACGCCGCCCCTCGCCGACGGCCTCGGCTTCGACCTCTACAGCGACTCGTGCCCGCAGCTGGAGACCACCGTGCGCTCCGCCGTGCAGGCGGCGCTCCAGCAGGAGATCGCCCTCGCCGCCGGCCTCCTCCGCATCTTCTTCCACGACTGCTTCCCCCAGGGCTGCGACGCGTCGCTGCTTCTGACGGGAGCCAACAGCGAGCAGCAGCTGCCGCCCAACCTGACTCTGCAACCACGGGCGCTGCAGCTCATCGAGGACATCCGCGCCCAGGTGCACGCCGCATGCGGCCCCACCGTCTCCTGCGCCGACATCACCGCCCTCGCCACCCGCGACGCCATCGTCGCCTCCGGTGGTCTGCCCTACGACGTGCCGCTCGGCCGCCTCGACAGCTTCGCGCCGGCTCCCAGCGACGCCGTCTTCCAGCTCCCGCAGCCCACCTCCGACGTCTCCACGCTGCTCAGCGCCTTCCAGACCCGCAACCTCGACAACGTCGACCTCGTCGCGCTCTCCGGCGGCCACTCCATCGGCAGGGCGCGATGCAGCTCCTTCTCCAACCGCTTCCGCGAGGACGACGACTTCGCCAGGAGGCTCGCCGCCAACTGCTCTAACGACGGCAGCCGCCTGCAGGAGCTTGATGTCACCACCCCGGACGTGTTCGACAACAAGTACTACAGCAACCTGGTGGCCGGTCAGGGGGTGTTCACCTCCGACCAGGGGCTCACCGGCGACTGGCGCACCAGCTGGGTGGTCAATGGCTTCGCCGGCAACCACTGGTGGTTCTACGGCCAGTTCGGCAGCTCCATGGTGAAGCTGGGACAGCTCCAGGGTCCTTCAGGGAACGTCGGCGAGATCCGCCGCAACAGCTGCTTCGTGCCCAACAGCCAGACCATCCTTGCGGCCGCCGGCGACGATGGCTTCACGGCATCTGCTTGA
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| Protein seq | MALRRMGIILVLLAIATLLSPAVSARFISLPTDHLPITTPPLADGLGFDLYSDSCPQLETTVRSAVQAALQQEIALAAGLLRIFFHDCFPQGCDASLLLTGANSEQQLPPNLTLQPRALQLIEDIRAQVHAACGPTVSCADITALATRDAIVASGGLPYDVPLGRLDSFAPAPSDAVFQLPQPTSDVSTLLSAFQTRNLDNVDLVALSGGHSIGRARCSSFSNRFREDDDFARRLAANCSNDGSRLQELDVTTPDVFDNKYYSNLVAGQGVFTSDQGLTGDWRTSWVVNGFAGNHWWFYGQFGSSMVKLGQLQGPSGNVGEIRRNSCFVPNSQTILAAAGDDGFTASA |
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| Function | Cationic peroxidase SPC4 [UniProtKB/Swiss-Prot:P84516] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g59160 | LOC_Os04g59160.1 | Chr04 | 35192194 | 35193779 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGTTGAGAAGAATGGGCATCATTCTTGTGCTCTTGGCCATTGCTACTCTGCTCTCGCCGGCAGTGTCCGCACGGTTCATCTCTCTGCCCACCGACCATCTTCCAATCACTACGCCGCCCCTCGCCGACGGCCTCGGCTTCGACCTCTACAGCGACTCGTGCCCGCAGCTGGAGACCACCGTGCGCTCCGCCGTGCAGGCGGCGCTCCAGCAGGAGATCGCCCTCGCCGCCGGCCTCCTCCGCATCTTCTTCCACGACTGCTTCCCCCAGGGCTGCGACGCGTCGCTGCTTCTGACGGGAGCCAACAGCGAGCAGCAGCTGCCGCCCAACCTGACTCTGCAACCACGGGCGCTGCAGCTCATCGAGGACATCCGCGCCCAGGTGCACGCCGCATGCGGCCCCACCGTCTCCTGCGCCGACATCACCGCCCTCGCCACCCGCGACGCCATCGTCGCCTCCGGTGGTCTGCCCTACGACGTGCCGCTCGGCCGCCTCGACAGCTTCGCGCCGGCTCCCAGCGACGCCGTCTTCCAGCTCCCGCAGCCCACCTCCGACGTCTCCACGCTGCTCAGCGCCTTCCAGACCCGCAACCTCGACAACGTCGACCTCGTCGCGCTCTCCGGCGGCCACTCCATCGGCAGGGCGCGATGCAGCTCCTTCTCCAACCGCTTCCGCGAGGACGACGACTTCGCCAGGAGGCTCGCCGCCAACTGCTCTAACGACGGCAGCCGCCTGCAGGAGCTTGATGTCACCACCCCGGACGTGTTCGACAACAAGTACTACAGCAACCTGGTGGCCGGTCAGGGGGTGTTCACCTCCGACCAGGGGCTCACCGGCGACTGGCGCACCAGCTGGGTGGTCAATGGCTTCGCCGGCAACCACTGGTGGTTCTACGGCCAGTTCGGCAGCTCCATGGTGAAGCTGGGACAGCTCCAGGGTCCTTCAGGGAACGTCGGCGAGATCCGCCGCAACAGCTGCTTCGTGCCCAACAGCCAGACCATCCTTGCGGCCGCCGGCGACGATGGCTTCACGGCATCTGCTTGA
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| Protein seq | MALRRMGIILVLLAIATLLSPAVSARFISLPTDHLPITTPPLADGLGFDLYSDSCPQLETTVRSAVQAALQQEIALAAGLLRIFFHDCFPQGCDASLLLTGANSEQQLPPNLTLQPRALQLIEDIRAQVHAACGPTVSCADITALATRDAIVASGGLPYDVPLGRLDSFAPAPSDAVFQLPQPTSDVSTLLSAFQTRNLDNVDLVALSGGHSIGRARCSSFSNRFREDDDFARRLAANCSNDGSRLQELDVTTPDVFDNKYYSNLVAGQGVFTSDQGLTGDWRTSWVVNGFAGNHWWFYGQFGSSMVKLGQLQGPSGNVGEIRRNSCFVPNSQTILAAAGDDGFTASA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0688200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0688200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0031880 | SBH | 0.0 | 41.363003 | 0.926877 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0032660 | SBH | 0.100051 | 18.292843 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0032250 | SBH | 0.0 | 14.119144 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0032080 | SBH | 0.080520 | 2.683309 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0032380 | SBH | 0.0 | 0.0 | 3.363317 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0556400 | RBH | 0.1575195 | 1.3533955 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0030980 | SBH | 0.069409 | 7.706303 | 0.188825 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0562300 | RBH | 0.19974 | 0.4554075 | 0.011532 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0031460 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0031260 | SBH | 0.685717 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0031390 | SBH | 1.691352 | 16.330233 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0031950 | RBH | 0.0 | 0.626897 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0031940 | SBH | 0.400996 | 23.364229 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G031440 | SBH | 0.298194 | 1.019661 | 1.026314 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0031180 | SBH | 1.722616 | 16.841997 | 3.523848 |
